TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0334a.6
         (203 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC83085 weakly similar to GP|11994101|dbj|BAB01104. gb|AAD39678....   309  4e-85
TC90846 similar to GP|20260286|gb|AAM13041.1 unknown protein {Ar...   155  1e-38
TC91538 weakly similar to PIR|C86286|C86286 protein F9L1.16 [imp...    98  5e-33
TC78675 similar to GP|9858775|gb|AAG01122.1| BAC19.7 {Lycopersic...    29  1.4
TC92414                                                                28  1.9
TC87085 similar to PIR|T01511|T01511 hypothetical protein T10M13...    27  4.2
TC87084 similar to GP|2529683|gb|AAC62866.1| unknown protein {Ar...    27  4.2
TC76371 weakly similar to GP|23304737|emb|CAC87937. PDI-like pro...    27  7.1
TC88450 similar to PIR|F86427|F86427 auxin response factor 6 (AR...    26  9.3

>TC83085 weakly similar to GP|11994101|dbj|BAB01104.
           gb|AAD39678.1~gene_id:MYF24.10~similar to unknown
           protein {Arabidopsis thaliana}, partial (41%)
          Length = 1186

 Score =  309 bits (792), Expect = 4e-85
 Identities = 155/210 (73%), Positives = 172/210 (81%), Gaps = 7/210 (3%)
 Frame = +2

Query: 1   MDKLSGES-QGRSFDREFYQKLTASFNRSSGRAGKPTVKWTE------ARIQDLPEVPEN 53
           M+KL  ES +G+SF  +FYQKL  SFN SSGRAGKP +KWTE       R+QD P+VP+N
Sbjct: 110 MEKLLRESSKGQSFTLDFYQKLAKSFNLSSGRAGKPVIKWTEIHSWFQTRLQDSPKVPQN 289

Query: 54  NLESSQGKCKEGETIRDPSQLEFEARSTKDGAWYDVEAFLAHRFVGTGEAEVRVRFVGFG 113
            L S Q  C EGE  RD S+LEFEARS+KD AWYDVE FLAHRF+ TGE EVRVRFVGFG
Sbjct: 290 ELVSPQ--CTEGENTRDSSELEFEARSSKDQAWYDVETFLAHRFLSTGEPEVRVRFVGFG 463

Query: 114 ASEDEWVNIKDSVRERSVPFESTDCSYLNVGDPVLCFQERRDQAIYYDARILEIQRRMHD 173
           A EDEWVNIK+SVRERSVPFE+T+CS L VGD VLCFQERRDQAIYYDA I+EIQRRMHD
Sbjct: 464 AEEDEWVNIKNSVRERSVPFENTECSNLKVGDYVLCFQERRDQAIYYDAHIVEIQRRMHD 643

Query: 174 IRGCRCLILVRYDHDNTEEKVRLRRLCRRP 203
           IRGCRC IL+RYDHDN EE+VRLRRLC RP
Sbjct: 644 IRGCRCHILIRYDHDNNEERVRLRRLCHRP 733


>TC90846 similar to GP|20260286|gb|AAM13041.1 unknown protein {Arabidopsis
           thaliana}, partial (61%)
          Length = 813

 Score =  155 bits (391), Expect = 1e-38
 Identities = 67/117 (57%), Positives = 91/117 (77%)
 Frame = +2

Query: 72  SQLEFEARSTKDGAWYDVEAFLAHRFVGTGEAEVRVRFVGFGASEDEWVNIKDSVRERSV 131
           S +EFEA+S +DGAWYDV  FL++R + + + EV VRF GFG+ EDEW+N++ +VR RS+
Sbjct: 458 SAMEFEAKSGRDGAWYDVATFLSYRHLESSDPEVLVRFAGFGSEEDEWINVRKNVRPRSL 637

Query: 132 PFESTDCSYLNVGDPVLCFQERRDQAIYYDARILEIQRRMHDIRGCRCLILVRYDHD 188
           P ES++C     GD +LCFQE ++QA+Y+DA +L+ QRR HD+RGCRC  LVRYDHD
Sbjct: 638 PCESSECVAELPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHD 808


>TC91538 weakly similar to PIR|C86286|C86286 protein F9L1.16 [imported] -
           Arabidopsis thaliana, partial (27%)
          Length = 792

 Score = 97.8 bits (242), Expect(2) = 5e-33
 Identities = 56/161 (34%), Positives = 87/161 (53%), Gaps = 23/161 (14%)
 Frame = +3

Query: 1   MDKLSGESQGRSFDREFYQKLTASFNRSSGRAGKPTVKWTEAR--IQDLPEVPENNLESS 58
           ++++  +   +S D  F + + A+F+ SS   GK ++ W + +  +Q+     + +  SS
Sbjct: 90  LERIYNDVGEKSLDPNFCKDIAANFSSSSNSDGKTSLTWEQVQQWLQNKHTETKGHFASS 269

Query: 59  ----------QGKCK-----------EGETIRDPSQLEFEARSTKDGAWYDVEAFLAHRF 97
                      GK             +G    D S+L FEA S KD AW+DV  FL +R 
Sbjct: 270 PEGLNLVVDLSGKSSSIKGNKSSPKPKGIQAADLSELAFEAVSIKDNAWHDVSMFLNYRV 449

Query: 98  VGTGEAEVRVRFVGFGASEDEWVNIKDSVRERSVPFESTDC 138
           + TGE EVRVR+ GFG  EDEW+N+K  VR+RS+P E+++C
Sbjct: 450 LCTGELEVRVRYHGFGKDEDEWINVKYGVRQRSIPLEASEC 572



 Score = 60.1 bits (144), Expect(2) = 5e-33
 Identities = 27/52 (51%), Positives = 35/52 (66%)
 Frame = +1

Query: 144 GDPVLCFQERRDQAIYYDARILEIQRRMHDIRGCRCLILVRYDHDNTEEKVR 195
           G  VLCF  + D A+Y DA +L+IQRR HD   C C+  VR+ HD +EE+VR
Sbjct: 589 GHLVLCFHVKSDYALYCDAIVLKIQRREHDSEECSCIFTVRFYHDKSEEEVR 744


>TC78675 similar to GP|9858775|gb|AAG01122.1| BAC19.7 {Lycopersicon
           esculentum}, partial (54%)
          Length = 1162

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 19/48 (39%), Positives = 25/48 (51%)
 Frame = +2

Query: 53  NNLESSQGKCKEGETIRDPSQLEFEARSTKDGAWYDVEAFLAHRFVGT 100
           +NLES+   CK    I D + L F+   T DG     EA L+  F+GT
Sbjct: 491 DNLESNGVSCKGRILISDRAHLLFDFHQTVDGL---REAELSKSFIGT 625


>TC92414 
          Length = 446

 Score = 28.5 bits (62), Expect = 1.9
 Identities = 20/78 (25%), Positives = 33/78 (41%), Gaps = 8/78 (10%)
 Frame = +3

Query: 134 ESTDCSYLNVGD---PVLCFQERRDQAIYYDARILEIQRRMHD-----IRGCRCLILVRY 185
           E+  C +    D   P+L    R    + YD  + +     HD     I   +  + + +
Sbjct: 147 EAVSCEHFESEDDDVPLLPRFTRISSLVKYDVSVKKRDFEFHDNNSLPISVKKSKVSLYH 326

Query: 186 DHDNTEEKVRLRRLCRRP 203
           DHDN E+ + L  L +RP
Sbjct: 327 DHDNDEDDIPLLDLIKRP 380


>TC87085 similar to PIR|T01511|T01511 hypothetical protein T10M13.11 -
           Arabidopsis thaliana, partial (12%)
          Length = 639

 Score = 27.3 bits (59), Expect = 4.2
 Identities = 19/53 (35%), Positives = 25/53 (46%)
 Frame = +3

Query: 122 IKDSVRERSVPFESTDCSYLNVGDPVLCFQERRDQAIYYDARILEIQRRMHDI 174
           IKD+    +   +S   S LN+ D  L    R DQA+   AR L   RR  D+
Sbjct: 345 IKDARSLIATQEQSEILSALNLLDAALAISPRLDQALELRARSLLYLRRFKDV 503


>TC87084 similar to GP|2529683|gb|AAC62866.1| unknown protein {Arabidopsis
           thaliana}, partial (81%)
          Length = 2109

 Score = 27.3 bits (59), Expect = 4.2
 Identities = 19/53 (35%), Positives = 25/53 (46%)
 Frame = +3

Query: 122 IKDSVRERSVPFESTDCSYLNVGDPVLCFQERRDQAIYYDARILEIQRRMHDI 174
           IKD+    +   +S   S LN+ D  L    R DQA+   AR L   RR  D+
Sbjct: 228 IKDARSLIATQEQSEILSALNLLDAALAISPRLDQALELRARSLLYLRRFKDV 386


>TC76371 weakly similar to GP|23304737|emb|CAC87937. PDI-like protein
           {Quercus suber}, partial (21%)
          Length = 1710

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 159 YYDARILEIQRRMHDIRGCRCLILVRYDHDNTEEKVR 195
           + D    +   R +D+ G  CL++++ DH   E  +R
Sbjct: 464 FSDLETKKALNRKYDVEGIPCLVMLQPDHSKGEATLR 574


>TC88450 similar to PIR|F86427|F86427 auxin response factor 6 (ARF6)
           [imported] - Arabidopsis thaliana, partial (17%)
          Length = 1422

 Score = 26.2 bits (56), Expect = 9.3
 Identities = 12/32 (37%), Positives = 18/32 (55%)
 Frame = +1

Query: 108 RFVGFGASEDEWVNIKDSVRERSVPFESTDCS 139
           RF+  G SED W+++ +S    S    S +CS
Sbjct: 853 RFINQGPSEDRWISL-NSAATMSCVVSSPECS 945


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,842,841
Number of Sequences: 36976
Number of extensions: 72569
Number of successful extensions: 279
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of query: 203
length of database: 9,014,727
effective HSP length: 91
effective length of query: 112
effective length of database: 5,649,911
effective search space: 632790032
effective search space used: 632790032
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)