BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0330.2
(1649 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana... 270 4e-72
BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis t... 159 2e-44
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna... 176 5e-44
BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ... 86 1e-26
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro... 99 2e-20
BG586326 similar to PIR|G84493|G8 probable retroelement pol poly... 91 5e-18
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin... 89 2e-17
BG587150 similar to GP|13592175|gb ppg3 {Leishmania major}, part... 79 1e-14
AL367832 weakly similar to GP|14091845|gb Putative retroelement ... 64 5e-10
BG644741 61 4e-09
BG587166 similar to GP|8778801|gb| T32E20.9 {Arabidopsis thalian... 56 1e-07
BG586308 weakly similar to PIR|F84528|F8 probable retroelement p... 54 4e-07
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ... 47 6e-05
BG644740 similar to PIR|A84460|A84 probable retroelement pol pol... 45 2e-04
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis... 45 3e-04
BG582085 40 0.008
BE999414 39 0.013
BG454871 weakly similar to GP|10140673|g putative gag-pol polypr... 39 0.017
BE997611 36 0.11
TC86635 weakly similar to GP|9758600|dbj|BAB09233.1 gene_id:MDF2... 32 2.0
>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
(10%)
Length = 624
Score = 270 bits (689), Expect = 4e-72
Identities = 120/199 (60%), Positives = 152/199 (76%)
Frame = +2
Query: 1250 LHDAKSYLWDDPFLFKICSDGVIRRCIPEVNFEKILWYCHGSSYGGHFSGERTAAKVLQS 1309
L D + YLWD+PFL+K C+D + RC+ E IL++CHGS+Y GHF+ +T +K+ Q+
Sbjct: 2 LKDVRRYLWDEPFLYKQCADNIYIRCVAEEEIPGILFHCHGSNYAGHFAVSKTVSKIQQA 181
Query: 1310 GFYWPTLNRDSRAFVESCDRCQRTGNISRRNEMPLKNILEIELFDVWGIDFMGPFPPSFG 1369
GF+WPT+ +D+ +F+ CD CQR GNIS RNEMP ILE+E+FDVWGIDFMGPFP S+
Sbjct: 182 GFWWPTMFKDAHSFISKCDPCQRQGNIS*RNEMPQNFILEVEVFDVWGIDFMGPFPSSYN 361
Query: 1370 CQYILLAVDYVSKWVEAAALSTNDSKVVVAFLKKNIFTRFGVPRAIISDGGTHFCNRAFE 1429
+YIL+AVDYVSKWVEA A TND+ VVV K IF RFGVPR +ISDGG+HF N+ FE
Sbjct: 362 NKYILVAVDYVSKWVEAIASPTNDATVVVKMFKSVIFPRFGVPRVVISDGGSHFINKVFE 541
Query: 1430 SLLEKYGVKHKVSTPYHPQ 1448
LL+K GV+HKV+T YHPQ
Sbjct: 542 KLLKKNGVRHKVATAYHPQ 598
>BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana},
partial (6%)
Length = 469
Score = 159 bits (403), Expect(2) = 2e-44
Identities = 81/125 (64%), Positives = 95/125 (75%)
Frame = +1
Query: 1513 LEHKAYWAIRKLNFDWKVASEKRLLQLNELDEFRLRAYESASIYKEKTKKWHDRKILNRE 1572
L K I+ LN D+K A KR+L+LNEL+E RL AYE+A IYKE+TKKWHDR+I+ RE
Sbjct: 28 LSIKPIGPIKALNMDYKAAGGKRVLELNELEELRLDAYENAKIYKERTKKWHDRRIIRRE 207
Query: 1573 FVSGQLVLLFNSRLRLFPGKLKSRWSGPFVVKRVFPHGAVEVENPETKNTFTVNGQRLKV 1632
F G+LVLLFNSRL+LFPGKL+S WSGPF VK V P GAVEV + E+ FTVNGQRLK
Sbjct: 208 FREGELVLLFNSRLKLFPGKLRSHWSGPFQVKNVMPSGAVEVWS-ESTGPFTVNGQRLKH 384
Query: 1633 YHGGE 1637
Y GE
Sbjct: 385 YTSGE 399
Score = 39.7 bits (91), Expect(2) = 2e-44
Identities = 15/16 (93%), Positives = 16/16 (99%)
Frame = +3
Query: 1505 KACHLPVELEHKAYWA 1520
K+CHLPVELEHKAYWA
Sbjct: 3 KSCHLPVELEHKAYWA 50
>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
alternata}, partial (21%)
Length = 1540
Score = 176 bits (447), Expect = 5e-44
Identities = 118/359 (32%), Positives = 184/359 (50%), Gaps = 4/359 (1%)
Frame = +1
Query: 775 VVRKEIIKLLDAGVIYPISDSEWVSPVQVVPKKGGITVVANENNELIPTRQVTKWRVCID 834
V++K + LLD G I S S +PV V K GG R C+D
Sbjct: 508 VLKKTLEDLLDKGFI-KASGSAAGAPVLFVRKPGGGI------------------RFCVD 630
Query: 835 YRRLNSVTRKDHFPLPFIDQMLDKLAGHQYYCFLDGYSGYNQICVAPEDQEKTAFTCPYD 894
YR LN++T+KD +PLP I + L ++AG +++ LD + ++++ + EDQEKTAF Y
Sbjct: 631 YRALNAITKKDRYPLPLISETLRRVAGARWFTKLDVVAAFHKMRIKDEDQEKTAFRTRYG 810
Query: 895 VFAYKRMPFGLCNAPATFQRCMFAIFSDLIETCIEIFMDDFSVF--GPNFDACLGNLALV 952
+F + PFGL APATFQR + + ++ + ++DD ++ G D + V
Sbjct: 811 LFEWIVCPFGLTGAPATFQRYINKTLHEFLDDFVTAYIDDVLIYTTGSKKDH-EAQVRRV 987
Query: 953 LKRCQETNLVLNWEKCHFMVRDGIVLGHKVSE-RGIEVDRAKIEVIEKLPPPTNIKGIRS 1011
L+R + L L+ +KC F V +G ++ +G+ D K+ I PP ++KG RS
Sbjct: 988 LRRLADAGLSLDPKKCEFSVTTVKYVGFILTAGKGVSCDPLKLAAIRDWLPPGSVKGARS 1167
Query: 1012 FLGHAGFYRRFIKDFSKLAKPMTNLLEKEAPFTFDENCLKAFESIKKSLVTAPVIVAPDW 1071
FLG +Y+ FI +S++ +P+T L K+ PF + AF +K+ PV+ D
Sbjct: 1168 FLGFCNYYKDFIPGYSEITEPLTRLTRKDFPFRWGAEQEAAFTKLKRLFAEEPVLRMFDP 1347
Query: 1072 SLPFEIMCDASDLALGAVLCQKK-ERVLYVIYYASTVLNEAQRNYTTTEKELLGVVFAC 1129
+ D S ALG VL Q+ + + + S L+ A+ NY +KELL V+AC
Sbjct: 1348 EAVTTVETDCSGFALGGVLTQEDGTGAAHPVAFHSQRLSPAEYNYPIHDKELL-AVWAC 1521
>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
thaliana, partial (13%)
Length = 763
Score = 85.9 bits (211), Expect(2) = 1e-26
Identities = 50/134 (37%), Positives = 73/134 (54%)
Frame = +2
Query: 881 PEDQEKTAFTCPYDVFAYKRMPFGLCNAPATFQRCMFAIFSDLIETCIEIFMDDFSVFGP 940
P+D EKTAF + YK MPFGL NA +T+QR + +F+D + +E+++DD V
Sbjct: 8 PDDLEKTAFITDRGTYCYKVMPFGLKNAGSTYQRLVNRMFADKLGNTMEVYIDDMLVKSL 187
Query: 941 NFDACLGNLALVLKRCQETNLVLNWEKCHFMVRDGIVLGHKVSERGIEVDRAKIEVIEKL 1000
L +L K E + LN KC F V G LG+ V+++GIEV+ +I I L
Sbjct: 188 RATDHLNHLKE*FKTLDEYIMKLNPAKCTFGVTSGEFLGYIVTQQGIEVNPKQITAILDL 367
Query: 1001 PPPTNIKGIRSFLG 1014
P P N + ++ G
Sbjct: 368 PSPKNSREVQRLTG 409
Score = 53.9 bits (128), Expect(2) = 1e-26
Identities = 33/118 (27%), Positives = 51/118 (42%)
Frame = +3
Query: 1014 GHAGFYRRFIKDFSKLAKPMTNLLEKEAPFTFDENCLKAFESIKKSLVTAPVIVAPDWSL 1073
G RFI + P LL F +DE C +AFE +K+ L T PV+ P+
Sbjct: 408 GRIAALNRFISRSTDKCLPFYKLLCGNKRFVWDEKCEEAFEQLKQYLTTPPVLSKPEAGD 587
Query: 1074 PFEIMCDASDLALGAVLCQKKERVLYVIYYASTVLNEAQRNYTTTEKELLGVVFACEK 1131
+ S A+ +VL ++ I+Y S + + + Y T EK V+ + K
Sbjct: 588 TLSLYIAISSTAVSSVLIREDRGEQKPIFYTSKRMTDPETRYPTLEKMAFAVITSARK 761
>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
blast fungus gypsy retroelement (fragment), partial (14%)
Length = 1708
Score = 98.6 bits (244), Expect = 2e-20
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 7/229 (3%)
Frame = +2
Query: 1283 KILWYCHGSSYGGHFSGERTAAKVLQSGFYWPTLNRDSRAFVESCDRCQ-----RTGNIS 1337
K++ H S+ GH G +++ F+WP ++ R FV +CD C R
Sbjct: 176 KLVQESHDSTAAGH-PGRNGTLEIVSRKFFWPGQSQTVRRFVRNCDVCGGIHIWRQAKRG 352
Query: 1338 RRNEMPLKNILEIELFDVWGIDFMGPFPPSFG--CQYILLAVDYVSKWVEAAALSTNDSK 1395
+P+ N L +L +DF+ PP+ G QY+ + VD +SK V + T +++
Sbjct: 353 FLKPLPVPNRLHSDL----SMDFITSLPPTRGRGSQYLWVIVDRLSKSVTLEEMDTMEAE 520
Query: 1396 VVVAFLKKNIFTRFGVPRAIISDGGTHFCNRAFESLLEKYGVKHKVSTPYHPQTSGQVEI 1455
+ G+P++I+SD G+++ R + GV +ST YHPQT G E
Sbjct: 521 ACAQRFLSCHYRFHGMPQSIVSDRGSNWVGRFWREFCRLTGVTQLLSTSYHPQTDGGTER 700
Query: 1456 SNRELKRILEKVVDSSRKDWSRKLDDALWAYRTAFKTPIGTSPFHLVFG 1504
N+E++ +L V S+ +W L A R + IG +PF + G
Sbjct: 701 WNQEIQAVLRAYVCWSQDNWGDLLPTVQLALRNRHNSSIGATPFFVEHG 847
>BG586326 similar to PIR|G84493|G8 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 736
Score = 90.5 bits (223), Expect = 5e-18
Identities = 52/132 (39%), Positives = 80/132 (60%)
Frame = +2
Query: 1062 TAPVIVAPDWSLPFEIMCDASDLALGAVLCQKKERVLYVIYYASTVLNEAQRNYTTTEKE 1121
+AP++V P+ + + + DAS LG VL Q ++ VI YAS L + + NY T + E
Sbjct: 11 SAPILVLPEL-ITYVVYTDASITGLGCVLTQHEK----VIAYASRQLRKHEGNYPTHDLE 175
Query: 1122 LLGVVFACEKFRPYILGFKVVVHTDHAALRHLFAKQDSKPRLIRWVLLLQEFDLEIIDRR 1181
+ VVFA + +R Y+ G KV +HTDH +L+++F + + R RW+ + ++DL+I
Sbjct: 176 MAAVVFALKIWRSYLYGAKVQIHTDHKSLKYIFTQPELNLRQRRWMEFVADYDLDITYYP 355
Query: 1182 GKDNGVADHLSR 1193
GK N VAD LSR
Sbjct: 356 GKANLVADALSR 391
>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
Ty3-Gypsy type {Oryza sativa}, partial (15%)
Length = 716
Score = 88.6 bits (218), Expect = 2e-17
Identities = 69/234 (29%), Positives = 105/234 (44%)
Frame = +2
Query: 757 NYKPIVQPQRRLNPSMKDVVRKEIIKLLDAGVIYPISDSEWVSPVQVVPKKGGITVVANE 816
N PI P R+NP V++ ++ LL+ G I P V V + KK G
Sbjct: 62 NMNPI*IPSYRINPLKLKVLKLQLKDLLEKGFIQPSIYP*GVV-VLFLKKKDGFL----- 223
Query: 817 NNELIPTRQVTKWRVCIDYRRLNSVTRKDHFPLPFIDQMLDKLAGHQYYCFLDGYSGYNQ 876
R+ IDY +LN+V K +PLP ID++ D L G +++ +D G +Q
Sbjct: 224 -------------RMSIDYPQLNNVNIKIKYPLPLIDELFDNLQGSKWFFKIDLRLG*HQ 364
Query: 877 ICVAPEDQEKTAFTCPYDVFAYKRMPFGLCNAPATFQRCMFAIFSDLIETCIEIFMDDFS 936
V ED KTAF Y + M FG N P F M +F D +++ + +F +D
Sbjct: 365 HRVIGEDVPKTAFRIRYGHYEILVMSFG*TNPPMAFMELMNRVFQDYLDSLVIVFSNDIL 544
Query: 937 VFGPNFDACLGNLALVLKRCQETNLVLNWEKCHFMVRDGIVLGHKVSERGIEVD 990
++ N + +L L LK ++ L +V G H +S G++VD
Sbjct: 545 IYSKNENEHENHLRLALKVLKDIGL-CQISYV*ILVEVGFFSLHVISGEGLKVD 703
>BG587150 similar to GP|13592175|gb ppg3 {Leishmania major}, partial (1%)
Length = 754
Score = 79.0 bits (193), Expect = 1e-14
Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 2/177 (1%)
Frame = +2
Query: 399 KFLEVFKKLHINIPFSEALEQMPIYAKFMKDILSKRRKLSEVDETI--LMTEECSAILQR 456
K +E F+K IP + E+ A F + R+ E +E I + E + +R
Sbjct: 152 KEMESFQKRVFMIPLEKPFEE----AYFTHRLWMFFRETRETEEDIRRMFCEAREKMKKR 319
Query: 457 KMPKKRRDPGSFTIPVEIEGLTVVEALCDLGASINLMPLSMFKRLNLGEVTPTMISLQMA 516
KK+ D G F I ++G+ ALC+ GAS+ ++P M L L +V P+ S
Sbjct: 320 ITLKKKSDSGKFAISWTMKGIEFPHALCNTGASVIILPRDMADHLGL-KVDPSKESFTFV 496
Query: 517 DRSLKTPYGIIEDVVVKVDKFVFPVDFVILDMEEDSKVPLILGRPFLATGEAEIKVA 573
D S ++ GII D+ V++ + PVDF +LD++ + L+L R FL+TG ++ A
Sbjct: 497 DCSQRSSGGIIRDLEVQIGNALVPVDFHVLDIKINWNSSLLLRRAFLSTGRGSVQHA 667
>AL367832 weakly similar to GP|14091845|gb Putative retroelement {Oryza
sativa}, partial (2%)
Length = 384
Score = 63.9 bits (154), Expect = 5e-10
Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Frame = -1
Query: 683 EEKSELKPLPSSLKYAYLEEGENKPVI-LNSALTPLEEEKLLRVLRDHKSALGWTIDDIK 741
+E+ ++P ++ L ENK I + +AL + K+ ++LR++ + +D+
Sbjct: 384 QERKAIQPHQEEIELINLGTEENKREIKVGAALEEGVKRKIFQLLREYLDIFACSYEDMP 205
Query: 742 GISPAICMHKILLEENYKPIVQPQRRLNPSMKDVVRKEIIKLLDAGVIYPISDSEWVSPV 801
G+ P I H+I + P+ RR +P M ++ E+ K +DAG + + EWV+ +
Sbjct: 204 GLDPKIVEHRIPTKPECPPVR*KLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANI 25
Query: 802 QVVPKKGG 809
VPKK G
Sbjct: 24 VPVPKKDG 1
>BG644741
Length = 735
Score = 60.8 bits (146), Expect = 4e-09
Identities = 30/110 (27%), Positives = 48/110 (43%)
Frame = -2
Query: 31 LSLFPFSLKDAAEDWLNSQPQGSLTTWEDLAEKFTTRFFPRSLLRKLKNDIMTFAQSTDE 90
L +FP SL A+ W P S+ TW L + F R++P S + + F E
Sbjct: 587 LRVFPLSLMGEADIWFTELPYNSIFTWNQLRDVFLARYYPVSKKLNHNDRVNNFVALPGE 408
Query: 91 NLYEAWEHFKKLLRKCPQHNLTQAECVAKFYDGLLYSSRFGLDAASSGEF 140
++ +W+ F LR P H + FY G +++ LD + G +
Sbjct: 407 SVSSSWDRFTSFLRSVPNHRIDDDSLKEYFYRGQDDNNKVVLDTIAGGSY 258
>BG587166 similar to GP|8778801|gb| T32E20.9 {Arabidopsis thaliana}, partial
(2%)
Length = 756
Score = 55.8 bits (133), Expect = 1e-07
Identities = 28/46 (60%), Positives = 37/46 (79%)
Frame = +1
Query: 1588 LFPGKLKSRWSGPFVVKRVFPHGAVEVENPETKNTFTVNGQRLKVY 1633
LFPGKLKSR SGPF VK V P+GA+ + + + ++ FTVNGQR+K+Y
Sbjct: 1 LFPGKLKSR*SGPFKVKEVRPYGAIVLWSTDGRD-FTVNGQRVKLY 135
>BG586308 weakly similar to PIR|F84528|F8 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 686
Score = 54.3 bits (129), Expect = 4e-07
Identities = 23/71 (32%), Positives = 44/71 (61%)
Frame = -2
Query: 1410 GVPRAIISDGGTHFCNRAFESLLEKYGVKHKVSTPYHPQTSGQVEISNRELKRILEKVVD 1469
G+P I++D G+HF + F E++ ++ ++P +PQ++GQ E SN+ + L+K +D
Sbjct: 682 GLPYEIVTDNGSHFISNKFREFCERWRIRLNTASPRYPQSNGQAEASNKIIIDGLKKRLD 503
Query: 1470 SSRKDWSRKLD 1480
+ W+ +LD
Sbjct: 502 LKKGCWADELD 470
>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
melanogaster}, partial (20%)
Length = 192
Score = 47.0 bits (110), Expect = 6e-05
Identities = 27/61 (44%), Positives = 36/61 (58%), Gaps = 1/61 (1%)
Frame = +1
Query: 1081 ASDLALGAVLCQK-KERVLYVIYYASTVLNEAQRNYTTTEKELLGVVFACEKFRPYILGF 1139
A D +GA L QK +E + I YAS +L A+RNYT E+E L ++A FR Y+ G
Sbjct: 1 APDWGIGAGLSQKDEENHEHPIAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYLHGP 180
Query: 1140 K 1140
K
Sbjct: 181 K 183
>BG644740 similar to PIR|A84460|A84 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 754
Score = 45.1 bits (105), Expect = 2e-04
Identities = 19/41 (46%), Positives = 28/41 (67%)
Frame = -1
Query: 829 WRVCIDYRRLNSVTRKDHFPLPFIDQMLDKLAGHQYYCFLD 869
+R+CIDYR+ N VT K+ +PLP ID + DK+ Y+ +D
Sbjct: 202 FRMCIDYRQFNKVTTKNKYPLPRIDNLFDKIQEDCYF*NID 80
>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
chromosome II BAC F26H6; putative retroelement pol
polyprotein, partial (1%)
Length = 636
Score = 44.7 bits (104), Expect = 3e-04
Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Frame = -2
Query: 1120 KELLGVVFACEKFRPYILGFKVVVHTDHAALRHLFAKQDSKPRLIRWVLLLQEFDLEIID 1179
K + +A ++ R Y++ + + ++++F K R+ RW +LL E+D+E
Sbjct: 635 KTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRS 456
Query: 1180 RRG-KDNGVADHLSRLEGGACSPI----PIQEEFPDEKLLAV---STEEPL 1222
++ K + +ADHL A P+ PI+ +FPDE+++ + +EPL
Sbjct: 455 QKAIKGSILADHL------AHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPL 321
>BG582085
Length = 824
Score = 40.0 bits (92), Expect = 0.008
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = -3
Query: 1161 PRLIRWVLLLQEFDLEIIDRRGKDNG----VADHLSRLEGGACSPIPIQEEFPDEKLLAV 1216
P +R +LL QEFDLE R+ ++ G +A R + + I I+E FP+E+L A+
Sbjct: 771 P*RLRCILLCQEFDLE--SRQERETGMW*LIAFPCLRNKQVTQNEISIKERFPNEQLFAI 598
Query: 1217 STEEPLPWYVHFANF 1231
S PW+ NF
Sbjct: 597 SQR---PWFADMTNF 562
>BE999414
Length = 613
Score = 39.3 bits (90), Expect = 0.013
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = +3
Query: 4 DPHAHMERFIRNCNTYRVMNVPSEAIRLSLFPFSLKDAAEDWLNSQPQGSLTTWEDLAEK 63
DP HME I TYR + A++ LF +L+ A W + + S+ +W DL +
Sbjct: 33 DPDEHMEN-IEVVLTYRSVR---GAVKCKLFVTTLRRGAMTWFKNLRRNSIGSWGDLCHE 200
Query: 64 FTTRF 68
FTT F
Sbjct: 201FTTHF 215
>BG454871 weakly similar to GP|10140673|g putative gag-pol polyprotein {Oryza
sativa (japonica cultivar-group)}, partial (7%)
Length = 674
Score = 38.9 bits (89), Expect = 0.017
Identities = 20/88 (22%), Positives = 43/88 (48%)
Frame = +2
Query: 1418 DGGTHFCNRAFESLLEKYGVKHKVSTPYHPQTSGQVEISNRELKRILEKVVDSSRKDWSR 1477
+G + + ++ L + +G +S+ YHP + GQ E N+ + L ++ + WS+
Sbjct: 11 EG*SSLYSNFWKQLFKLHGTILTMSSAYHP*SDGQSEALNKGXEMYLRCLMFTDPLKWSK 190
Query: 1478 KLDDALWAYRTAFKTPIGTSPFHLVFGK 1505
A + Y T++ +PF ++G+
Sbjct: 191 AFPWAEYWYNTSYNISAAMTPFKALYGR 274
>BE997611
Length = 547
Score = 36.2 bits (82), Expect = 0.11
Identities = 17/59 (28%), Positives = 32/59 (53%)
Frame = -2
Query: 390 KKNLDK*FSKFLEVFKKLHINIPFSEALEQMPIYAKFMKDILSKRRKLSEVDETILMTE 448
+K + F+ + K +N+P +E +EQ+P KF++++L LSE + L +E
Sbjct: 444 EKEVPPKFNALHHILKGYKVNMPITETVEQIPCCIKFLQELLKTNANLSEEEFISLSSE 268
>TC86635 weakly similar to GP|9758600|dbj|BAB09233.1
gene_id:MDF20.10~pir||T08929~similar to unknown protein
{Arabidopsis thaliana}, partial (32%)
Length = 1963
Score = 32.0 bits (71), Expect = 2.0
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +2
Query: 307 HQGKFSSETLTLIEQENTAVVSTRSGRVLHEPEEKIEGDKNEEAEVERDEGVMEERAREP 366
HQ + + E T +E++ + +S E EEK EGD+ E+ E E +E EE A E
Sbjct: 2 HQEEGNDEEKTEVEEKEEGDDNEKSEE---ETEEKEEGDEKEKTEAETEE---EEEADED 163
Query: 367 T 367
T
Sbjct: 164 T 166
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,660,518
Number of Sequences: 36976
Number of extensions: 756367
Number of successful extensions: 3363
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 3312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3357
length of query: 1649
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1540
effective length of database: 4,984,343
effective search space: 7675888220
effective search space used: 7675888220
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0330.2