BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0327.1
(91 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC91524 similar to GP|15217238|gb|AAK92582.1 Hypothetical protei... 27 1.3
TC76485 homologue to GP|4097684|gb|AAD00154.1| ubiquitin conjuga... 27 1.8
BE205210 GP|18844786|db contains ESTs C97279(C53695) C97278(C536... 27 1.8
AW774151 similar to PIR|A86444|A864 probable RNA helicase [impor... 27 1.8
BQ139241 similar to GP|4097684|gb| ubiquitin conjugating enzyme ... 27 1.8
TC76392 similar to GP|14030701|gb|AAK53025.1 At2g28370/T1B3.11 {... 27 1.8
TC76377 homologue to PIR|S12206|S12206 hypothetical protein 2 (r... 27 1.8
CB891337 PIR|T52341|T52 ADP-ribosylation factor [imported] - ric... 27 1.8
AW686718 similar to GP|6642656|gb|A unknown protein {Arabidopsis... 27 1.8
TC76482 similar to PIR|T00517|T00517 probable metal ion transpor... 27 1.8
TC76421 homologue to PIR|T02995|T02995 unspecific monooxygenase ... 27 1.8
CB891961 homologue to GP|2213425|emb| hypothetical protein {Citr... 27 1.8
TC76423 homologue to GP|13171103|gb|AAK13589.1 rRNA intron-encod... 27 1.8
TC87447 homologue to GP|15148912|gb|AAK84883.1 NAC domain protei... 27 1.8
BG644913 similar to PIR|D84651|D846 hypothetical protein At2g256... 27 1.8
TC89039 homologue to GP|5230728|gb|AAD40979.1| peroxisomal coppe... 26 2.3
TC93337 weakly similar to GP|21240660|gb|AAM44371.1 hypothetical... 26 3.0
TC84782 weakly similar to PIR|A96661|A96661 unknown protein 870... 25 6.7
BG584058 weakly similar to PIR|T48558|T485 hypothetical protein ... 25 6.7
TC87391 homologue to GP|22832155|gb|AAF48195.2 CG4013-PA {Drosop... 24 8.7
>TC91524 similar to GP|15217238|gb|AAK92582.1 Hypothetical protein {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (5%)
Length = 824
Score = 26.9 bits (58), Expect = 1.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 57 KGTPFDPAVYNDPSIISQRLPIVKQMTQNL 86
K P+DP V + +I LP+V ++ NL
Sbjct: 454 KKLPYDPTVLSSLPVIMNLLPVVASLSPNL 365
>TC76485 homologue to GP|4097684|gb|AAD00154.1| ubiquitin conjugating enzyme
{Metarhizium anisopliae}, partial (17%)
Length = 1084
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = -2
Query: 33 GGSTNPVILRESCWRESTFQALSAKGTPFDP 63
GG+T P+ R + E T Q + G P DP
Sbjct: 669 GGTTRPIKARSASPAEGTSQPVHTIGGPIDP 577
>BE205210 GP|18844786|db contains ESTs C97279(C53695) C97278(C53695)~unknown
protein {Oryza sativa (japonica cultivar-group)},
partial (7%)
Length = 540
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = -2
Query: 33 GGSTNPVILRESCWRESTFQALSAKGTPFDP 63
GG+T P+ R + E T Q + G P DP
Sbjct: 161 GGTTRPIKARSASPAEGTSQPVHTIGGPIDP 69
>AW774151 similar to PIR|A86444|A864 probable RNA helicase [imported] -
Arabidopsis thaliana, partial (15%)
Length = 540
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = -1
Query: 33 GGSTNPVILRESCWRESTFQALSAKGTPFDP 63
GG+T P+ R + E T Q + G P DP
Sbjct: 252 GGTTRPIKARSASPAEGTSQPVHTIGGPIDP 160
>BQ139241 similar to GP|4097684|gb| ubiquitin conjugating enzyme {Metarhizium
anisopliae}, partial (82%)
Length = 664
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = -1
Query: 33 GGSTNPVILRESCWRESTFQALSAKGTPFDP 63
GG+T P+ R + E T Q + G P DP
Sbjct: 217 GGTTRPIKARSASPAEGTSQPVHTIGGPIDP 125
>TC76392 similar to GP|14030701|gb|AAK53025.1 At2g28370/T1B3.11 {Arabidopsis
thaliana}, partial (55%)
Length = 918
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = -2
Query: 33 GGSTNPVILRESCWRESTFQALSAKGTPFDP 63
GG+T P+ R + E T Q + G P DP
Sbjct: 113 GGTTRPIKARSASPAEGTSQPVHTIGGPIDP 21
>TC76377 homologue to PIR|S12206|S12206 hypothetical protein 2 (rRNA external
transcribed spacer) - mouse, partial (21%)
Length = 1409
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = -3
Query: 33 GGSTNPVILRESCWRESTFQALSAKGTPFDP 63
GG+T P+ R + E T Q + G P DP
Sbjct: 1278 GGTTRPIKARSASPAEGTSQPVHTIGGPIDP 1186
>CB891337 PIR|T52341|T52 ADP-ribosylation factor [imported] - rice, partial
(14%)
Length = 616
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = +1
Query: 33 GGSTNPVILRESCWRESTFQALSAKGTPFDP 63
GG+T P+ R + E T Q + G P DP
Sbjct: 226 GGTTRPIKARSASPAEGTSQPVHTIGGPIDP 318
>AW686718 similar to GP|6642656|gb|A unknown protein {Arabidopsis thaliana},
partial (19%)
Length = 566
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = -2
Query: 33 GGSTNPVILRESCWRESTFQALSAKGTPFDP 63
GG+T P+ R + E T Q + G P DP
Sbjct: 115 GGTTRPIKARSASPAEGTSQPVHTIGGPIDP 23
>TC76482 similar to PIR|T00517|T00517 probable metal ion transporter (NRAMP)
[imported] - Arabidopsis thaliana, partial (8%)
Length = 599
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = -3
Query: 33 GGSTNPVILRESCWRESTFQALSAKGTPFDP 63
GG+T P+ R + E T Q + G P DP
Sbjct: 135 GGTTRPIKARSASPAEGTSQPVHTIGGPIDP 43
>TC76421 homologue to PIR|T02995|T02995 unspecific monooxygenase (EC
1.14.14.1) - common tobacco, partial (44%)
Length = 5080
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = -2
Query: 33 GGSTNPVILRESCWRESTFQALSAKGTPFDP 63
GG+T P+ R + E T Q + G P DP
Sbjct: 504 GGTTRPIKARSASPAEGTSQPVHTIGGPIDP 412
>CB891961 homologue to GP|2213425|emb| hypothetical protein {Citrus x
paradisi}, partial (11%)
Length = 417
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = -3
Query: 33 GGSTNPVILRESCWRESTFQALSAKGTPFDP 63
GG+T P+ R + E T Q + G P DP
Sbjct: 229 GGTTRPIKARSASPAEGTSQPVHTIGGPIDP 137
>TC76423 homologue to GP|13171103|gb|AAK13589.1 rRNA intron-encoded homing
endonuclease {Oryza sativa}, partial (43%)
Length = 1334
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = -2
Query: 33 GGSTNPVILRESCWRESTFQALSAKGTPFDP 63
GG+T P+ R + E T Q + G P DP
Sbjct: 733 GGTTRPIKARSASPAEGTSQPVHTIGGPIDP 641
>TC87447 homologue to GP|15148912|gb|AAK84883.1 NAC domain protein NAC1
{Phaseolus vulgaris}, partial (92%)
Length = 1496
Score = 26.6 bits (57), Expect = 1.8
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 44 SCWRESTFQALSAKGT 59
SCW E F LS KGT
Sbjct: 391 SCWNEKDFSVLSRKGT 438
>BG644913 similar to PIR|D84651|D846 hypothetical protein At2g25680
[imported] - Arabidopsis thaliana, partial (16%)
Length = 817
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = -2
Query: 33 GGSTNPVILRESCWRESTFQALSAKGTPFDP 63
GG+T P+ R + E T Q + G P DP
Sbjct: 273 GGTTRPIKARSASPAEGTSQPVHTIGGPIDP 181
>TC89039 homologue to GP|5230728|gb|AAD40979.1| peroxisomal
copper-containing amine oxidase {Glycine max}, partial
(33%)
Length = 981
Score = 26.2 bits (56), Expect = 2.3
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 18 GVLIRLRDTRMHCVFGGSTNP-VILRESC 45
G+LIR TRM V +NP ++L+ESC
Sbjct: 442 GILIRELSTRMQFVACVRSNP*IVLQESC 356
>TC93337 weakly similar to GP|21240660|gb|AAM44371.1 hypothetical protein
{Dictyostelium discoideum}, partial (7%)
Length = 743
Score = 25.8 bits (55), Expect = 3.0
Identities = 10/41 (24%), Positives = 21/41 (50%)
Frame = -1
Query: 32 FGGSTNPVILRESCWRESTFQALSAKGTPFDPAVYNDPSII 72
F STN + + +F ++S+ P P+ ++ PS++
Sbjct: 158 FPSSTNSSLRSTTSGFSGSFSSISSSSPPLSPSSFSPPSLV 36
>TC84782 weakly similar to PIR|A96661|A96661 unknown protein 87064-86156
[imported] - Arabidopsis thaliana, partial (7%)
Length = 652
Score = 24.6 bits (52), Expect = 6.7
Identities = 12/32 (37%), Positives = 18/32 (55%)
Frame = +2
Query: 48 ESTFQALSAKGTPFDPAVYNDPSIISQRLPIV 79
ES F + +D +DPS++SQRLP +
Sbjct: 419 ESFFGDMQELTFTYDFDDIDDPSVVSQRLPFM 514
>BG584058 weakly similar to PIR|T48558|T485 hypothetical protein F14F18.160 -
Arabidopsis thaliana, partial (11%)
Length = 651
Score = 24.6 bits (52), Expect = 6.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 24 RDTRMHCVFGGSTN 37
R ++HC+ GGSTN
Sbjct: 649 RKVKLHCINGGSTN 608
>TC87391 homologue to GP|22832155|gb|AAF48195.2 CG4013-PA {Drosophila
melanogaster}, partial (0%)
Length = 2359
Score = 24.3 bits (51), Expect = 8.7
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 1 SL*ILLV---DLVLMQLRVDGVLIRLRDTRMHCVFGGSTN 37
SL ILL+ L+L+ L +L+ + R+HC GGS N
Sbjct: 934 SLPILLIAPPQLLLLLL----LLLLASNERLHCTIGGSLN 1041
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.331 0.144 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,517,950
Number of Sequences: 36976
Number of extensions: 26831
Number of successful extensions: 164
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of query: 91
length of database: 9,014,727
effective HSP length: 67
effective length of query: 24
effective length of database: 6,537,335
effective search space: 156896040
effective search space used: 156896040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0327.1