BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0321.5
(1411 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 208 1e-53
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 187 2e-47
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 145 8e-45
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 156 5e-38
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 154 3e-37
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 128 1e-29
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 120 5e-27
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 59 1e-19
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 95 2e-19
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 94 4e-19
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 70 2e-17
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 84 4e-16
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 81 3e-15
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 78 3e-14
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 71 3e-12
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 69 1e-11
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 69 2e-11
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 68 3e-11
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 68 3e-11
BF519055 similar to GP|21592754|gb| unknown {Arabidopsis thalian... 64 4e-10
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 208 bits (529), Expect = 1e-53
Identities = 101/199 (50%), Positives = 136/199 (67%)
Frame = +1
Query: 899 MKHP*WLAAMEDELSALHKNCTWTLVPRPSTTNVVGIKWVFRTKFHSDGTVERLKARLVA 958
+ P WL AM+ E AL N TW LVP P +G KWV+R K + DG+V + KARLVA
Sbjct: 82 LSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKFKARLVA 261
Query: 959 QGFTQIPGFDYSLTFSPVVKATTVRLILSHVVLNDWQLHQLDVKNAFLHGHLTETVYMEQ 1018
+GF+Q G DY+ TFSPV+K T+RLIL+ + W++ Q+D+ NAFL+G L E VYM Q
Sbjct: 262 KGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQ 441
Query: 1019 PPGFVDPRFPTHVCRLNKALYGLKQAPRAWFQRLSSFLLRHGFSCSRADPSLFFFYKGHT 1078
P GF + + VC+LNK+LYGLKQAPRAW++ L+S ++ GF+ SR DPSL + +
Sbjct: 442 PQGF-EAANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQNGA 618
Query: 1079 TLYLLVYVDDIILTGSDPS 1097
+YL +YVDDI++TGS S
Sbjct: 619 CIYLXIYVDDILITGSSAS 675
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 187 bits (476), Expect = 2e-47
Identities = 105/242 (43%), Positives = 140/242 (57%), Gaps = 1/242 (0%)
Frame = +2
Query: 1029 THVCRLNKALYGLKQAPRAWFQRLSSFLLRHGFSCSRADPSLFFFYKGHTTLYLLVYVDD 1088
T VC L K++YGLKQA R W+ +LS L+ G+ S +D SLF +K + LLVYVDD
Sbjct: 14 TKVCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDD 193
Query: 1089 IILTGSDPSLLTQFIARLNAEFAIKYLGKLGYFLGLEITYTPDGLFLGQAKYAHDLLSRA 1148
I+L G+D S + L F IK LG L YFLGLE+ + G+ L Q KY +LL +
Sbjct: 194 IVLAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDS 373
Query: 1149 MMLEASHVSTPLAAGSHLVSS-GEAYFDPTHYRSLVGALQYLTITRPDLSYAVNTVSQFL 1207
L TP L +S Y D T YR L+G L YLT TRPD+S+AV +SQF+
Sbjct: 374 GNLAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFV 553
Query: 1208 QAPTMEHFQAVKRILRYVCGTQHFGLTFRRTSSPAVLGYSDADWARCTDTRRSTYGYAIF 1267
P H+QA R+L+Y+ GL + TS+ + ++D+DWA C TR+S GY +F
Sbjct: 554 SKPQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVF 733
Query: 1268 LG 1269
LG
Sbjct: 734 LG 739
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 145 bits (366), Expect(2) = 8e-45
Identities = 68/141 (48%), Positives = 96/141 (67%)
Frame = -2
Query: 949 VERLKARLVAQGFTQIPGFDYSLTFSPVVKATTVRLILSHVVLNDWQLHQLDVKNAFLHG 1008
+ R K++LV QG+ Q G DY FSPV + +R++++ ++L+Q+DVK+AF++G
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 1009 HLTETVYMEQPPGFVDPRFPTHVCRLNKALYGLKQAPRAWFQRLSSFLLRHGFSCSRADP 1068
L E V+++QPPGF D P HV RLNK LYGLKQAPRAW++RLS FLL++GF + D
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 1069 SLFFFYKGHTTLYLLVYVDDI 1089
+LF + L + VYVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 55.1 bits (131), Expect(2) = 8e-45
Identities = 23/59 (38%), Positives = 36/59 (60%)
Frame = -3
Query: 884 TAFHTVTKPKGFKSAMKHP*WLAAMEDELSALHKNCTWTLVPRPSTTNVVGIKWVFRTK 942
+AF + +PK K A++ W+ +M++EL ++ W LVPRP V+G +WVFR K
Sbjct: 609 SAFISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVFRNK 433
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 156 bits (395), Expect = 5e-38
Identities = 80/217 (36%), Positives = 125/217 (56%), Gaps = 1/217 (0%)
Frame = +1
Query: 1124 LEITYTPDGLFLGQAKYAHDLLSRAMMLEASHVSTPLAAGSHLVSSGEAY-FDPTHYRSL 1182
+E+ +G+++ Q KY DLL R M +++ P+A L+ D T Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 1183 VGALQYLTITRPDLSYAVNTVSQFLQAPTMEHFQAVKRILRYVCGTQHFGLTFRRTSSPA 1242
VG L YL TRPDL Y ++ +S+F+ PT H AVKR+LRY+ GT + G+ ++R S
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 1243 VLGYSDADWARCTDTRRSTYGYAIFLGDNLLSWSAKKQPTVARSSCESEYRAMANTASEL 1302
+ Y+D+D+A D R+ST GY L +SWS+KKQP V S+ ++E+ A A A +
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 1303 VWLLNLLHELRVRLSATPLLLSDNQSALFMAQNPVAH 1339
VW+ +L +L S + + DN S + +++NPV H
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 154 bits (388), Expect = 3e-37
Identities = 81/180 (45%), Positives = 108/180 (60%)
Frame = -1
Query: 892 PKGFKSAMKHP*WLAAMEDELSALHKNCTWTLVPRPSTTNVVGIKWVFRTKFHSDGTVER 951
P+ ++ AM+ W ++ E A+ KN TW P V +W+F K+ +DG++ER
Sbjct: 558 PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379
Query: 952 LKARLVAQGFTQIPGFDYSLTFSPVVKATTVRLILSHVVLNDWQLHQLDVKNAFLHGHLT 1011
K RLVA+GFT G DY TF+PV K T+R++LS V W L Q+DVKNAFL G L
Sbjct: 378 KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199
Query: 1012 ETVYMEQPPGFVDPRFPTHVCRLNKALYGLKQAPRAWFQRLSSFLLRHGFSCSRADPSLF 1071
+ VYM PPG +V RL KA+YGLKQ+PRAW+ +LS+ L GF S D +LF
Sbjct: 198 DEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLF 19
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 128 bits (322), Expect = 1e-29
Identities = 76/265 (28%), Positives = 140/265 (52%), Gaps = 7/265 (2%)
Frame = +3
Query: 878 QPTGILTAFHTVTKPKGFKSAMKHP*WLAAMEDELSALHKNCTWTLVPRPSTTNVVGIKW 937
Q G+LT + P F+ A+K W A+M +E+ A +N TW L S +G+KW
Sbjct: 9 QNLGMLTM---TSDPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKW 179
Query: 938 VFRTKFHSDGTVERLKARLVAQGFTQIPGFDYSLTFSPVVKATTVRLIL---SHVVLNDW 994
+F+TK + +G +E+ KARLVA+G++Q G DY+ F+PV + T+R+++ + + +
Sbjct: 180 IFKTKLNENGEIEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGV 359
Query: 995 QLHQLDVKNAFLHGHLTETVYMEQP---PGFVDPRFPTHVCRLNKALYGLKQAPRAWFQR 1051
+ + ++ + + + + + + R + L +A PRAW+ R
Sbjct: 360 CIS*M*KAHSCMEN*MRKFLLINHRVM*RRVIS*RVKRALYGLKQA-------PRAWYSR 518
Query: 1052 LSSFLLRHGFSCSRADPSLFF-FYKGHTTLYLLVYVDDIILTGSDPSLLTQFIARLNAEF 1110
+ ++ + GF + +LF +G L + +YVDD+I G+D ++ +F + EF
Sbjct: 519 IEAYFTKEGFEKCPYEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEF 698
Query: 1111 AIKYLGKLGYFLGLEITYTPDGLFL 1135
+ LGK+ YFLG+E+T G+++
Sbjct: 699 NMSDLGKMHYFLGVEVTQNEKGIYI 773
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 120 bits (300), Expect = 5e-27
Identities = 59/148 (39%), Positives = 92/148 (61%)
Frame = +2
Query: 1249 ADWARCTDTRRSTYGYAIFLGDNLLSWSAKKQPTVARSSCESEYRAMANTASELVWLLNL 1308
+DWA T+TR+ST GYA LG +SWS+KKQP VA S+ E+EY A + A++ VWL +
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1309 LHELRVRLSATPLLLSDNQSALFMAQNPVAHKHAKHIDLDCHFVCELVASGRLAVRHVPT 1368
L + + + DN+SA+ +++NPV H +KHID+ H + EL+A + + + PT
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
Query: 1369 SLQLADIFTKALPRPLFEIFRSKLRVGL 1396
++ADIFTK P + ++ K +G+
Sbjct: 362 EEKIADIFTK--PLKIESFYKLKKMLGM 439
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 58.5 bits (140), Expect(2) = 1e-19
Identities = 34/77 (44%), Positives = 44/77 (56%)
Frame = +1
Query: 1218 VKRILRYVCGTQHFGLTFRRTSSPAVLGYSDADWARCTDTRRSTYGYAIFLGDNLLSWSA 1277
VKRI+RY+ GT + F S V GY D+D+A D R+ST GY L +SW +
Sbjct: 1 VKRIMRYIKGTSGVAVCFGG-SELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 1278 KKQPTVARSSCESEYRA 1294
K Q VA S+ E+EY A
Sbjct: 178 KLQTVVALSTTEAEYMA 228
Score = 57.4 bits (137), Expect(2) = 1e-19
Identities = 32/97 (32%), Positives = 51/97 (51%)
Frame = +3
Query: 1294 AMANTASELVWLLNLLHELRVRLSATPLLLSDNQSALFMAQNPVAHKHAKHIDLDCHFVC 1353
++ E +W+ L+ EL + + D+QSAL +A+NP H KHI + HFV
Sbjct: 228 SLPQACKEAIWMQRLMEELGHKQEQITVYC-DSQSALHIARNPAFHSRTKHIGIQYHFVR 404
Query: 1354 ELVASGRLAVRHVPTSLQLADIFTKALPRPLFEIFRS 1390
E+V G + ++ + T+ LAD TK++ F RS
Sbjct: 405 EVVEEGSVDMQKIHTNDNLADAMTKSINTDKFIWCRS 515
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 95.1 bits (235), Expect = 2e-19
Identities = 52/165 (31%), Positives = 89/165 (53%), Gaps = 2/165 (1%)
Frame = +1
Query: 1216 QAVKRILRYVCGTQHFGLTFRRTSSP--AVLGYSDADWARCTDTRRSTYGYAIFLGDNLL 1273
QA+K +L+Y+ + L + + + A+ GY DAD+A DTR+S G+ L +
Sbjct: 1 QALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTI 180
Query: 1274 SWSAKKQPTVARSSCESEYRAMANTASELVWLLNLLHELRVRLSATPLLLSDNQSALFMA 1333
SW A +Q V S+ ++EY A + +WL ++ EL + + D+QSA+ +A
Sbjct: 181 SWKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVK-IHCDSQSAIHLA 357
Query: 1334 QNPVAHKHAKHIDLDCHFVCELVASGRLAVRHVPTSLQLADIFTK 1378
+ V H+ KHID+ HF+ +++ S + V + + AD+FTK
Sbjct: 358 NHQVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 94.0 bits (232), Expect = 4e-19
Identities = 52/124 (41%), Positives = 72/124 (57%), Gaps = 3/124 (2%)
Frame = +1
Query: 1193 RPDLSYAVNTVSQFLQAPTMEHFQAVKRILRYVCGTQHFGLTF---RRTSSPAVLGYSDA 1249
RPD+ Y+V+ +S+F+ P H A RILRYV GT +GL F ++ ++ YSD+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1250 DWARCTDTRRSTYGYAIFLGDNLLSWSAKKQPTVARSSCESEYRAMANTASELVWLLNLL 1309
DW C D RRST GY D +SW KKQP A SS E+EY A + +WL +++
Sbjct: 301 DW--CGD-RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 1310 HELR 1313
EL+
Sbjct: 472 KELK 483
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 70.1 bits (170), Expect(2) = 2e-17
Identities = 41/118 (34%), Positives = 58/118 (48%), Gaps = 1/118 (0%)
Frame = +1
Query: 1043 QAPRAWFQRLSSFLLRHGFSCSRADPSLFFFYKGHTT-LYLLVYVDDIILTGSDPSLLTQ 1101
Q+PR WF R + + + G+ + D ++F + L+VYVDDI LTG + +
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180
Query: 1102 FIARLNAEFAIKYLGKLGYFLGLEITYTPDGLFLGQAKYAHDLLSRAMMLEASHVSTP 1159
L EF IK LG L YFLG+E+ G + Q KY DLL M+ + P
Sbjct: 181 LKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Score = 38.9 bits (89), Expect(2) = 2e-17
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +2
Query: 1175 DPTHYRSLVGALQYLTITRPDLSYAVNTVSQFL 1207
D Y+ LVG L YL+ TRPD+S+ V T+SQF+
Sbjct: 404 DKGRYQRLVGKLIYLSHTRPDISFVVCTMSQFM 502
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 84.0 bits (206), Expect = 4e-16
Identities = 41/115 (35%), Positives = 62/115 (53%)
Frame = +1
Query: 614 HTQAQNGRVEQKHRHVLELGLAMLYHSHVPTRYWVDAFSTAVYIINRVPSKVLSNQIPFQ 673
HT QNG E+ +R +LE AML + + +W +A TA Y+INR PS V+ + P +
Sbjct: 82 HTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPME 261
Query: 674 LLFHVAPTYANFHPFGCRVFPCLRPYMNNKFSPRSTPCIFFGYSSHHKGFKCFNP 728
+ Y++ H FGC V+ K P+S CIF GY+ + KG+ ++P
Sbjct: 262 MWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWDP 426
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 80.9 bits (198), Expect = 3e-15
Identities = 37/94 (39%), Positives = 60/94 (63%)
Frame = +2
Query: 920 TWTLVPRPSTTNVVGIKWVFRTKFHSDGTVERLKARLVAQGFTQIPGFDYSLTFSPVVKA 979
T LV +P+ +G++W+++ K + DGT+ + KARLVA+G+ + G D+ F+PVV+
Sbjct: 56 TLKLVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPVVRI 235
Query: 980 TTVRLILSHVVLNDWQLHQLDVKNAFLHGHLTET 1013
T+ L+L+ N +H +DVK AFL+GH T
Sbjct: 236 ETI*LLLALAATNGC*IHHIDVKIAFLNGHFVGT 337
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 77.8 bits (190), Expect = 3e-14
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 4/179 (2%)
Frame = +1
Query: 579 RSIKVFQSDNGTEFTNNKVHTLFASSGVLHRFSCPHTQAQNGRVEQKHRHVLELGLAMLY 638
+++K +DN EF ++ + + G+ + P QNG E+ R +LE ML
Sbjct: 280 KNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCMLS 459
Query: 639 HSHVPT--RYWVDAFSTAVYIINRVPSKVLSNQIPFQLLFHVAPTYANFHPFGCRVFPCL 696
++ + WV+A STA +++NR P L ++P + Y+N FGC + +
Sbjct: 460 NAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYALV 639
Query: 697 RPYMNNKFSPRSTPCIFFGYSSHHKGFK--CFNPAISLTYVSHHAQFDEFCFPFAGSHS 753
+ K +PR+ CIF Y+S KG++ C +P +S F+E +G S
Sbjct: 640 N---DGKLAPRAGECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDALLSSGKQS 807
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 71.2 bits (173), Expect = 3e-12
Identities = 33/90 (36%), Positives = 50/90 (54%)
Frame = -2
Query: 654 AVYIINRVPSKVLSNQIPFQLLFHVAPTYANFHPFGCRVFPCLRPYMNNKFSPRSTPCIF 713
A Y+INR+P++VL +Q PF++L P+ FGC + + + NK RS +F
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 714 FGYSSHHKGFKCFNPAISLTYVSHHAQFDE 743
GYS+ KG+KC++P VS +F E
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIE 435
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 68.9 bits (167), Expect = 1e-11
Identities = 39/89 (43%), Positives = 49/89 (54%)
Frame = -2
Query: 973 FSPVVKATTVRLILSHVVLNDWQLHQLDVKNAFLHGHLTETVYMEQPPGFVDPRFPTHVC 1032
F P+VK T+ +LS V + + L LDVK AFL G L E +YM QP GF V
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGF-S*EVGKMVG 378
Query: 1033 RLNKALYGLKQAPRAWFQRLSSFLLRHGF 1061
+L K++YGLKQ PR L + R GF
Sbjct: 377 KLKKSMYGLKQGPRQCI*SLKALCTRKGF 291
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 68.6 bits (166), Expect = 2e-11
Identities = 32/86 (37%), Positives = 56/86 (64%)
Frame = -3
Query: 581 IKVFQSDNGTEFTNNKVHTLFASSGVLHRFSCPHTQAQNGRVEQKHRHVLELGLAMLYHS 640
IK+ +SDNG E+T+ + G+LH+ SCP+T QNG ++K++H++E+ ++++ +
Sbjct: 245 IKILRSDNGGEYTSYAFKSHLDHHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMFQA 66
Query: 641 HVPTRYWVDAFSTAVYIINRVPSKVL 666
+V STA Y+IN +P+KVL
Sbjct: 65 NV---------STACYLINWIPTKVL 15
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 67.8 bits (164), Expect = 3e-11
Identities = 35/79 (44%), Positives = 48/79 (60%)
Frame = +2
Query: 1316 LSATPLLLSDNQSALFMAQNPVAHKHAKHIDLDCHFVCELVASGRLAVRHVPTSLQLADI 1375
+S + LL D SA ++ NPV H KHI +D HFV +LV G+L V+HV T QLAD
Sbjct: 5 ISQSGLLRCDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLADC 184
Query: 1376 FTKALPRPLFEIFRSKLRV 1394
TK L + ++ R+K+ V
Sbjct: 185 LTKPLSKSRHQLLRNKIGV 241
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 67.8 bits (164), Expect = 3e-11
Identities = 33/99 (33%), Positives = 57/99 (57%)
Frame = -3
Query: 1189 LTITRPDLSYAVNTVSQFLQAPTMEHFQAVKRILRYVCGTQHFGLTFRRTSSPAVLGYSD 1248
LT+ P++++++N +S++ APTM H +K I +Y+ G GL + + SP ++GY +
Sbjct: 525 LTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGYVN 346
Query: 1249 ADWARCTDTRRSTYGYAIFLGDNLLSWSAKKQPTVARSS 1287
A + RS GY G+ ++SW + K T+A SS
Sbjct: 345 A*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSS 229
>BF519055 similar to GP|21592754|gb| unknown {Arabidopsis thaliana}, partial
(30%)
Length = 675
Score = 63.9 bits (154), Expect = 4e-10
Identities = 32/82 (39%), Positives = 48/82 (58%)
Frame = -3
Query: 1170 GEAYFDPTHYRSLVGALQYLTITRPDLSYAVNTVSQFLQAPTMEHFQAVKRILRYVCGTQ 1229
G D S+VGAL Y+T+T PDLS+++N SQF+ PT +FQ +K+++R
Sbjct: 661 GSITADSKLVHSIVGALLYITVTCPDLSFSINKPSQFMHKPTQINFQQLKKVMR------ 500
Query: 1230 HFGLTFRRTSSPAVLGYSDADW 1251
H LT ++ + +SDADW
Sbjct: 499 HPKLTIKKLFDLQIYAFSDADW 434
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.347 0.151 0.556
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,411,835
Number of Sequences: 36976
Number of extensions: 1203880
Number of successful extensions: 28615
Number of sequences better than 10.0: 615
Number of HSP's better than 10.0 without gapping: 7888
Number of HSP's successfully gapped in prelim test: 965
Number of HSP's that attempted gapping in prelim test: 6944
Number of HSP's gapped (non-prelim): 15154
length of query: 1411
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1303
effective length of database: 5,021,319
effective search space: 6542778657
effective search space used: 6542778657
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0321.5