TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0320b.5
         (930 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BE941280 weakly similar to GP|20197614|g unknown protein {Arabid...   172  4e-43
BM814840 weakly similar to GP|15128241|db helicase-like protein ...   150  2e-36
CB892155 similar to PIR|D86481|D86 hypothetical protein AAG28292...    99  1e-20
BI271341                                                               83  4e-16
TC91093 weakly similar to PIR|T01873|T01873 hypothetical protein...    80  5e-15
CB892166 similar to GP|20197614|gb unknown protein {Arabidopsis ...    59  9e-09
AJ497367 similar to GP|14140286|gb putative helicase {Oryza sati...    56  6e-08
TC84660 similar to PIR|D86481|D86481 hypothetical protein AAG282...    44  4e-04
TC80146                                                                40  0.003
BG447912                                                               31  2.5

>BE941280 weakly similar to GP|20197614|g unknown protein {Arabidopsis
           thaliana}, partial (8%)
          Length = 403

 Score =  172 bits (437), Expect = 4e-43
 Identities = 86/134 (64%), Positives = 102/134 (75%)
 Frame = -1

Query: 474 LYGFGGSGKTFVWNTLSAALRSEGKIVLNVASSGIASLLLPGGRTAHSRFSIPITIHESS 533
           LY +GG+ KTF+W  LSAALRSEG+IVL  ASSGI +LL+PGGRTAHSRF IP  I E+S
Sbjct: 403 LYDYGGTEKTFIWRALSAALRSEGEIVLACASSGIDALLMPGGRTAHSRFGIPFIIDETS 224

Query: 534 TCNVRQGSHKAEMLQKASLIIWDEAPMLNKHCFEALDKTLNDIMKTQATFGHDKPFAGKV 593
            C V      A ++ KA LIIWDEAPM++KHCFEALD++L D++KT      D PF GKV
Sbjct: 223 MCGVTPNIPLASLVIKAKLIIWDEAPMMHKHCFEALDRSLRDVLKTVDERNKDIPFGGKV 44

Query: 594 VVLGGDFRQILPVI 607
           VVLGGDFRQIL V+
Sbjct: 43  VVLGGDFRQILLVM 2


>BM814840 weakly similar to GP|15128241|db helicase-like protein {Oryza
           sativa (japonica cultivar-group)}, partial (6%)
          Length = 733

 Score =  150 bits (379), Expect = 2e-36
 Identities = 76/127 (59%), Positives = 94/127 (73%)
 Frame = +3

Query: 804 NGTRLIVSALTPYIIVATALSGSKTGKPVYIPRLSLTPSDTGLPFKFSRRQFPITVCFAM 863
           +GTRLI+ +L   +I A  + G+  G+  YIPR++L PS   +   F R QFP+ + FAM
Sbjct: 27  HGTRLIIVSLGKNVICARVIGGTHAGEVSYIPRMNLIPSGANVSITFERCQFPLVLSFAM 206

Query: 864 TINKSQGQSLSHVGLYLPRPVFTHGQLYVALSRVKSRKRLKILIVDDKGVVSNCTRNVVY 923
           TINKSQGQ+L+ VGLYLPRPVFTHGQLYVA+SRVKSR  LKILI D+ G  S+ T NVVY
Sbjct: 207 TINKSQGQTLTSVGLYLPRPVFTHGQLYVAVSRVKSRSGLKILITDENGSPSSSTVNVVY 386

Query: 924 EEVFQNI 930
           +EVFQ I
Sbjct: 387 QEVFQKI 407


>CB892155 similar to PIR|D86481|D86 hypothetical protein AAG28292.1
           [imported] - Arabidopsis thaliana, partial (4%)
          Length = 572

 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 50/74 (67%), Positives = 57/74 (76%)
 Frame = -2

Query: 857 ITVCFAMTINKSQGQSLSHVGLYLPRPVFTHGQLYVALSRVKSRKRLKILIVDDKGVVSN 916
           + V FAMTINKSQGQSL H+G+YLP  VF+HGQLYVALSRV SR+ LKILI +D G    
Sbjct: 370 VEVYFAMTINKSQGQSLKHIGVYLPSSVFSHGQLYVALSRVTSREGLKILISNDDGEDDC 191

Query: 917 CTRNVVYEEVFQNI 930
            T NVVY EVF N+
Sbjct: 190 VTSNVVYREVFHNL 149


>BI271341 
          Length = 468

 Score = 83.2 bits (204), Expect = 4e-16
 Identities = 46/103 (44%), Positives = 67/103 (64%)
 Frame = +1

Query: 600 FRQILPVILKGSRSEIISSSANSSYLWKHCKVMKLTTNMRLQQAGSSSSSLEIKEFADWL 659
           FR ILPVI +GSRS+II ++ NSS +  HC+V++L  NM LQQ G SS+  E ++F+  +
Sbjct: 1   FR*ILPVIPRGSRSDIIHATINSSCI*DHCQVVRLKKNMWLQQNGQSSNDPEFEQFSK*I 180

Query: 660 LQVGDGTIKPIDEDDSIIEIPTYLLVRESDNPLLELVNFAYLN 702
           L+VGDG I   ++  + I+IP  LL+   D+ L  +V   Y N
Sbjct: 181 LKVGDGKIYEPNDSYADIDIPPELLISNYDDSLQTIVQSTYQN 309


>TC91093 weakly similar to PIR|T01873|T01873 hypothetical protein T24M8.10 -
           Arabidopsis thaliana, partial (11%)
          Length = 701

 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 49/148 (33%), Positives = 81/148 (54%)
 Frame = +3

Query: 648 SSLEIKEFADWLLQVGDGTIKPIDEDDSIIEIPTYLLVRESDNPLLELVNFAYLNVVANL 707
           + +E K FA+ L      T K  + +DS  E+ T        +P+  +V   Y N+V+  
Sbjct: 297 TKVEFKTFAEIL------TGKMSEPNDSYAEVDT-----PPGDPIDAIVQSTYPNLVSQY 443

Query: 708 ENHAYFEQRALLAPTLESVEEVNNFMMSMIPGEETKYLSYDTPCRSDEDSEIDAEWFTSE 767
            N  + + RA+L  T E V+++N++++ +IPGEE    S +   RS+ +     +    E
Sbjct: 444 NNEQFLQSRAILTSTDEVVDQINDYVLKLIPGEERVIYSAN---RSEVNDVQAFDAIPPE 614

Query: 768 FLNDLKCSGIPNHRIVLKVGVPIMLIQN 795
           FL  LK S +PNH++ LKVG PIML+++
Sbjct: 615 FLQSLKTSDLPNHKLTLKVGTPIMLLRD 698


>CB892166 similar to GP|20197614|gb unknown protein {Arabidopsis thaliana},
           partial (3%)
          Length = 748

 Score = 58.9 bits (141), Expect = 9e-09
 Identities = 30/52 (57%), Positives = 39/52 (74%)
 Frame = -1

Query: 879 YLPRPVFTHGQLYVALSRVKSRKRLKILIVDDKGVVSNCTRNVVYEEVFQNI 930
           +  R VF+HGQLYVA+SRV SR  LKIL++D+ G   + T NVVY +VFQN+
Sbjct: 289 FYDREVFSHGQLYVAISRVSSRNGLKILMIDENGDCIDNTTNVVY-KVFQNV 137


>AJ497367 similar to GP|14140286|gb putative helicase {Oryza sativa (japonica
           cultivar-group)}, partial (1%)
          Length = 543

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 27/46 (58%), Positives = 36/46 (77%)
 Frame = +1

Query: 885 FTHGQLYVALSRVKSRKRLKILIVDDKGVVSNCTRNVVYEEVFQNI 930
           F++G+LYVA+SRV SRK LKIL+  + G   N T NVVY+EVF+N+
Sbjct: 19  FSNGKLYVAVSRVTSRKGLKILLAHEDGNCMNTTSNVVYKEVFRNL 156


>TC84660 similar to PIR|D86481|D86481 hypothetical protein AAG28292.1
           [imported] - Arabidopsis thaliana, partial (1%)
          Length = 1009

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 20/30 (66%), Positives = 25/30 (82%)
 Frame = +2

Query: 872 SLSHVGLYLPRPVFTHGQLYVALSRVKSRK 901
           S++  G+YLP+P+F HG LYVALSRV SRK
Sbjct: 68  SMATKGMYLPQPIF*HG*LYVALSRVTSRK 157


>TC80146 
          Length = 476

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 17/35 (48%), Positives = 27/35 (76%)
 Frame = -3

Query: 857 ITVCFAMTINKSQGQSLSHVGLYLPRPVFTHGQLY 891
           I + +  TINKS+ QSLS++ +YL RP+F+H ++Y
Sbjct: 471 IQIPYFKTINKSR*QSLSYMKIYLSRPIFSHEEMY 367


>BG447912 
          Length = 645

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -3

Query: 738 PGEETKYLSYDTPCRSDEDSEIDAEWFTSEFLNDLKCSGIPNHRIVLKVGVPIMLI 793
           PG E   ++ D  C      ++DA    SEFL DLK +  PN   +   G+  M +
Sbjct: 439 PGREASRINLDGRC-----PDVDAAAVESEFLTDLKTNFEPNLLPLFPAGIKAMTV 287


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.344    0.151    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,023,914
Number of Sequences: 36976
Number of extensions: 384508
Number of successful extensions: 3363
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 167
Number of HSP's that attempted gapping in prelim test: 1929
Number of HSP's gapped (non-prelim): 1636
length of query: 930
length of database: 9,014,727
effective HSP length: 105
effective length of query: 825
effective length of database: 5,132,247
effective search space: 4234103775
effective search space used: 4234103775
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 63 (28.9 bits)