BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0320a.8
(1611 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 285 8e-77
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 191 3e-48
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 176 5e-44
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 133 2e-41
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 152 8e-37
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 147 4e-35
BQ122291 136 6e-32
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 126 6e-29
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 116 8e-26
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 112 9e-25
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 68 3e-23
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 106 6e-23
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 94 3e-19
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 94 6e-19
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 79 2e-14
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 77 5e-14
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 77 7e-14
BI266628 75 1e-13
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 72 1e-12
TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol po... 72 1e-12
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 285 bits (730), Expect = 8e-77
Identities = 133/228 (58%), Positives = 173/228 (75%), Gaps = 1/228 (0%)
Frame = +1
Query: 1072 TRAKNGIVKPRLQPTLLLTHLEPTSVKQA-MKDAKWYKAMQEEYTALMNNGTWTLVPLPA 1130
TR K G +L+P + LT P + + D +W +AM+ EY AL++N TW LVPLP
Sbjct: 4 TRTKTG----KLKPKVFLTEPCPQDCENLPLSDPRWLQAMKTEYKALIDNKTWDLVPLPP 171
Query: 1131 NRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSL 1190
++ +GCKW+YR+KENPDGS+NK+KARLVAKG+SQ G DY+ETFSPV+KP+T+RLIL++
Sbjct: 172 HKKAIGCKWVYRVKENPDGSVNKFKARLVAKGFSQTLGCDYTETFSPVIKPVTIRLILTI 351
Query: 1191 AISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDKNLVCKLQKALYGLKQAPRAWF 1250
AI+ W +QQ+D+NNAFLNG L+EEVYM QP GFE +K+LVCKL K+LYGLKQAPRAW+
Sbjct: 352 AITYKWEIQQIDINNAFLNGFLQEEVYMSQPQGFEAANKSLVCKLNKSLYGLKQAPRAWY 531
Query: 1251 HRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMS 1298
L I+FGF S+CDPSL Y + CIY+ +YVDDI+ITG+S S
Sbjct: 532 EXLTSAQIQFGFTKSRCDPSLLIYNQNGACIYLXIYVDDILITGSSAS 675
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 191 bits (484), Expect = 3e-48
Identities = 103/244 (42%), Positives = 145/244 (59%)
Frame = +2
Query: 1232 VCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDII 1291
VC+LQK++YGLKQA R W+ +L E LI FG+ S D SLFT + +LVYVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 1292 ITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVN 1351
+ G +S IQ + L F +K LG L YFLG++V G +LLNQ KY +LL
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQG-ILLNQRKYTLELLEDSG 376
Query: 1352 MLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMA 1411
L + TP +KL ++ D T+YR ++G L Y T TRP+ISFAV ++ QF++
Sbjct: 377 NLAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVS 556
Query: 1412 QPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSC 1471
+P + H++A R+L+YLK G+ S T L L ++ D+DW + P R+S +G
Sbjct: 557 KPQQVHYQAAIRVLQYLKTAPAKGLFY---SATSNLKLSSFADSDWATCPTTRKSVTGYW 727
Query: 1472 VFLG 1475
VFLG
Sbjct: 728 VFLG 739
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 176 bits (447), Expect = 5e-44
Identities = 88/181 (48%), Positives = 122/181 (66%), Gaps = 1/181 (0%)
Frame = -1
Query: 1094 PTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINK 1153
P S ++AM+D +W +++ E A++ N TW LP + V +WI+ IK DGSI +
Sbjct: 558 PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379
Query: 1154 YKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLE 1213
K RLVA+G++ G DY ETF+PV K T+R++LSLA++ GW L Q+DV NAFL G LE
Sbjct: 378 KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199
Query: 1214 EEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLF 1272
+EVYM PPG EH K V +L+KA+YGLKQ+PRAW+++L L GF+ S+ D +LF
Sbjct: 198 DEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLF 19
Query: 1273 T 1273
T
Sbjct: 18 T 16
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 133 bits (334), Expect(2) = 2e-41
Identities = 66/141 (46%), Positives = 95/141 (66%), Gaps = 1/141 (0%)
Frame = -2
Query: 1151 INKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNG 1210
I + K++LV +GY+Q +G DY E FSPV + +R++++ A G+ L Q+DV +AF+NG
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 1211 VLEEEVYMVQPPGFEHKD-KNLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDP 1269
L+EEV++ QPPGFE + N V +L K LYGLKQAPRAW+ RL + L++ GF+ K D
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 1270 SLFTYYSSQGCIYMLVYVDDI 1290
+LF + + VYVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 56.6 bits (135), Expect(2) = 2e-41
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = -3
Query: 1089 LTHLEPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIK 1144
++ +EP +VK+A++DA W +MQEE + W LVP P +T +G +W++R K
Sbjct: 600 ISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVFRNK 433
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 152 bits (385), Expect = 8e-37
Identities = 87/248 (35%), Positives = 142/248 (57%), Gaps = 7/248 (2%)
Frame = +3
Query: 1093 EPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSIN 1152
+PT+ ++A+K KW +M E A N TW L L + +G KWI++ K N +G I
Sbjct: 39 DPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNENGEIE 218
Query: 1153 KYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLA--ISR-GWPLQQLDVNNAFLN 1209
KYKARLVAKGYSQ G DY+E F+PV + T+R++++LA I R G + + ++ +
Sbjct: 219 KYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS*M*KAHSCME 398
Query: 1210 GVLEEEVYMVQPPGFEHK---DKNLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASK 1266
+ + + + H+ + + ++++ALYGLKQAPRAW+ R++ + GF+
Sbjct: 399 N*MRKFLLI------NHRVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKEGFEKCP 560
Query: 1267 CDPSLFTYYSSQGCIYML-VYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGV 1325
+ +LF S G I ++ +YVDD+I G ++ ++ + F + LG++ YFLGV
Sbjct: 561 YEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKMHYFLGV 740
Query: 1326 QVTHLSNG 1333
+VT G
Sbjct: 741 EVTQNEKG 764
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 147 bits (370), Expect = 4e-35
Identities = 79/207 (38%), Positives = 122/207 (58%), Gaps = 1/207 (0%)
Frame = +1
Query: 1339 QTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPE 1398
Q KY++DLL + M + P+ KL K+E D T+Y+ +VG L Y TRP+
Sbjct: 40 QRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQIVGCLMYLAATRPD 219
Query: 1399 ISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWG 1458
+ + ++ + +FM P E H AVKR+LRYL GT+ GI+ + + L AY D+D+
Sbjct: 220 LMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK---LEAYTDSDYA 390
Query: 1459 SDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTEL 1518
D DDR+STSG L +SW++KKQ +V S+T+AE+ + A + +W++ +L +L
Sbjct: 391 GDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQSVWMRRVLEKL 570
Query: 1519 KIPFT-IPTVYCDNMSTVLLTHNPILH 1544
+ T+YCDN ST+ L+ NP+LH
Sbjct: 571 GYTQSGSITMYCDNNSTIKLSKNPVLH 651
>BQ122291
Length = 487
Score = 136 bits (343), Expect = 6e-32
Identities = 59/145 (40%), Positives = 103/145 (70%)
Frame = -2
Query: 78 NPLFADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRN 137
NP + +WE +DSLL TW+LS +SP++L + HS+QVW+EIHS+ + + +S QLR+
Sbjct: 459 NPAYTEWEDKDSLLCTWILSRISPSLLSRFVLLRHSWQVWDEIHSYCFTQMKTRSRQLRS 280
Query: 138 ELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQ 197
EL++ITKG++T SEF+ RI+ I +LASIG+PV+ RD +E + + L EE+ ++ + +
Sbjct: 279 ELRSITKGSRTVSEFIARIRAISESLASIGDPVSHRDLIEVVLEALPEEFDPIVASVNAK 100
Query: 198 TTYFTISEVEAMVISHEARFDRMRK 222
+ ++ E+E+ +++ E+R ++ +K
Sbjct: 99 SEVVSLDELESQLLTQESRKEKFKK 25
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 126 bits (317), Expect = 6e-29
Identities = 76/220 (34%), Positives = 114/220 (51%), Gaps = 2/220 (0%)
Frame = -3
Query: 668 SCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCKACCLSKLHRLPS 727
S S S ++ LWH+RLGHPH L N+ +P C+AC L K +
Sbjct: 620 SFTSSSSLNKDALWHARLGHPHGRAL-------NLMLPGVVFENKNCEACILGKHCKNVF 462
Query: 728 SSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFI 787
++TVY F+L++ DLW SL S YF+T +D +KYTW+ + K F
Sbjct: 461 PRTSTVYENCFDLIYTDLWTAPSL-SRDNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFK 285
Query: 788 NFQAMVELQFGHKLKSVQTDGGGEFK--PLTSHFQKLGIIHRLTCPHTHHQNGSVERKHR 845
NFQA V + K+K +++D GGE+ SH GI+H+ +CP+T QNG +RK++
Sbjct: 284 NFQAYVTNHYHAKIKILRSDNGGEYTSYAFKSHLDHHGILHQTSCPYTPQQNGVAKRKNK 105
Query: 846 HIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQ 885
H++E +L+ A++ A YLIN + T L+
Sbjct: 104 HLMEVARSLMFQANVS---------TACYLINWIPTKVLR 12
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 116 bits (290), Expect = 8e-26
Identities = 55/147 (37%), Positives = 90/147 (60%), Gaps = 1/147 (0%)
Frame = +2
Query: 1455 ADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSL 1514
+DW D + R+STSG LG ISW++KKQ +VA S+ EAEY + + + +W++ +
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1515 LTELKIPFTIPT-VYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPS 1573
L + PT +YCDN S + L+ NP+ H R+KH+++ +RE + +K +++++ P+
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
Query: 1574 EHQKADIFTKALSPTRFLLLKDKLNVV 1600
E + ADIFTK L F LK L ++
Sbjct: 362 EEKIADIFTKPLKIESFYKLKKMLGMM 442
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 112 bits (281), Expect = 9e-25
Identities = 73/231 (31%), Positives = 118/231 (50%), Gaps = 9/231 (3%)
Frame = +1
Query: 739 ELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFG 798
+ + +DLWGP+ + S G Y +T +D + WV+ L+ K++T TF ++ +VE Q G
Sbjct: 100 DYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQTG 279
Query: 799 HKLKSVQTDGGGEFKPLTSHFQKL----GIIHRLTCPHTHHQNGSVERKHRHIVETGLAL 854
+K + TD EF +S F + GI T P QNG ER R ++E +
Sbjct: 280 KNVKKLITDN*LEF--CSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCM 453
Query: 855 LSHASM--PLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFP 912
LS+A + W A A +L+NR + L P G D+ +L++FG +
Sbjct: 454 LSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYA 633
Query: 913 FLRPYNSNKLSLHSKECVFIGYSINHKGYK--CLD-QSGRIYISKDVLFHE 960
+ N KL+ + EC+F+ Y+ KGY+ C D +S ++ +S+DV F+E
Sbjct: 634 LV---NDGKLAPRAGECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNE 777
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 68.2 bits (165), Expect(2) = 3e-23
Identities = 33/102 (32%), Positives = 57/102 (55%)
Frame = +3
Query: 1500 SLANTTAELLWVQSLLTELKIPFTIPTVYCDNMSTVLLTHNPILHTRTKHMEMDIFFVRE 1559
SL E +W+Q L+ EL TVYCD+ S + + NP H+RTKH+ + FVRE
Sbjct: 228 SLPQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVRE 407
Query: 1560 KVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNVVD 1601
V++ S+ +Q + + AD TK+++ +F+ + +++
Sbjct: 408 VVEEGSVDMQKIHTNDNLADAMTKSINTDKFIWCRSSYGLLE 533
Score = 60.1 bits (144), Expect(2) = 3e-23
Identities = 34/78 (43%), Positives = 48/78 (60%)
Frame = +1
Query: 1421 VKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLIS 1480
VKRI+RY+KGT G+ + C L + Y D+D+ D D R+ST+G L +S
Sbjct: 1 VKRIMRYIKGT--SGVAV--CFGGSELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVS 168
Query: 1481 WTAKKQSLVARSSTEAEY 1498
W +K Q++VA S+TEAEY
Sbjct: 169 WLSKLQTVVALSTTEAEY 222
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 106 bits (265), Expect = 6e-23
Identities = 53/165 (32%), Positives = 94/165 (56%)
Frame = +1
Query: 1419 KAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNL 1478
+A+K +L+YL +L + + L Y DAD+ + D R+S SG L
Sbjct: 1 QALKWVLKYLNESLKSSLKYTKAAQEEDA-LEGYVDADYAGNVDTRKSLSGFVFTLYGTT 177
Query: 1479 ISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFTIPTVYCDNMSTVLLT 1538
ISW A +QS+V S+T+AEY + + +W++ ++ EL I ++CD+ S + L
Sbjct: 178 ISWKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKIHCDSQSAIHLA 357
Query: 1539 HNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTK 1583
++ + H RTKH+++ + F+R+ ++ K ++V+ + SE AD+FTK
Sbjct: 358 NHQVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 94.4 bits (233), Expect = 3e-19
Identities = 46/89 (51%), Positives = 61/89 (67%)
Frame = +2
Query: 1122 TWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKP 1181
T LV P P+G +WIY+IK N DG++ KYKARLVAKGY + QG D+ E F+PVV+
Sbjct: 56 TLKLVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPVVRI 235
Query: 1182 ITVRLILSLAISRGWPLQQLDVNNAFLNG 1210
T+ L+L+LA + G + +DV AFLNG
Sbjct: 236 ETI*LLLALAATNGC*IHHIDVKIAFLNG 322
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 93.6 bits (231), Expect = 6e-19
Identities = 51/124 (41%), Positives = 72/124 (57%)
Frame = +1
Query: 1396 RPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDA 1455
RP+I ++V+ + +FM P + H A RILRY++GT+ +G+L + + LI Y D+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1456 DWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLL 1515
DW DRRSTSG ISW KKQ + A SS EAEY + T + LW+ S++
Sbjct: 301 DWCG---DRRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 1516 TELK 1519
ELK
Sbjct: 472 KELK 483
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 78.6 bits (192), Expect = 2e-14
Identities = 42/114 (36%), Positives = 58/114 (50%)
Frame = +1
Query: 832 HTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYF 891
HT QNG ER +R ++E A+L A M FW A A Y+INR +T + +P
Sbjct: 82 HTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPME 261
Query: 892 KLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLD 945
G+ D+ SL VFG + KL S++C+F+GY+ N KGY D
Sbjct: 262 MWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 77.0 bits (188), Expect = 5e-14
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Frame = +1
Query: 1244 QAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQ-GCIYMLVYVDDIIITGASMSLIQQ 1302
Q+PR WF R V+ +FG+ + D ++F +SS ++VYVDDI +TG I++
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180
Query: 1303 LTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPM 1362
L L F +K LG L YFLG++V G+ ++Q KY+ DLL + M+ I P
Sbjct: 181 LKNLLAEEFEIKDLGNLKYFLGMEVARWKKGS-SISQRKYVLDLLKETRMIGCKTIRDPY 357
Query: 1363 QC 1364
C
Sbjct: 358 GC 363
Score = 46.2 bits (108), Expect = 1e-04
Identities = 25/58 (43%), Positives = 31/58 (53%)
Frame = +2
Query: 1353 LDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFM 1410
LD TPM VKL + L D Y+ +VG L Y + TRP+ISF V + QFM
Sbjct: 329 LDVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQFM 502
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 76.6 bits (187), Expect = 7e-14
Identities = 38/78 (48%), Positives = 50/78 (63%)
Frame = +2
Query: 1529 CDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPT 1588
CD +S LTHNP+ H+R KH+ +DI FVR+ VQ L VQHV + Q AD TK LS +
Sbjct: 29 CDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLADCLTKPLSKS 208
Query: 1589 RFLLLKDKLNVVDKQVLL 1606
R LL++K+ V D +L
Sbjct: 209 RHQLLRNKIGVTDGTPIL 262
>BI266628
Length = 536
Score = 75.5 bits (184), Expect(2) = 1e-13
Identities = 41/93 (44%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Frame = -1
Query: 29 IKLDDSNFY-------SWKQQVEGVIRSHKLQKFVQDPPMIPEKFLTEEDKITENVNPLF 81
IK+D SN WKQQVEGV+R K KFV P IP +LT+E + P +
Sbjct: 449 IKVDPSNKQVLS*VRLQWKQQVEGVLRETKTVKFVISP-QIPPVYLTDEAREAGTKKPAY 273
Query: 82 ADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSY 114
+WE+QDSLL TW+LST+ P++L + HS+
Sbjct: 272 TEWEEQDSLLCTWILSTI*PSLLSRFVLLRHSW 174
Score = 20.8 bits (42), Expect(2) = 1e-13
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -3
Query: 116 VWEEIHSFFNAKSR 129
VW+EIHS+ +S+
Sbjct: 174 VWDEIHSYCFMQSK 133
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 72.4 bits (176), Expect = 1e-12
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Frame = -2
Query: 872 ATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVF 931
A YLINR+ T L+ +P+ L + P ++VFG C+ + NKL S++ +F
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 932 IGYSINHKGYKCLD-QSGRIYISKDVLFHEHRFPY 965
IGYS KGYKC D ++ R+ +S+DV F E R Y
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYY 420
>TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol polyprotein
{Oryza sativa}, partial (1%)
Length = 638
Score = 72.4 bits (176), Expect = 1e-12
Identities = 43/125 (34%), Positives = 69/125 (54%)
Frame = +2
Query: 1080 KPRLQPTLLLTHLEPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKW 1139
K R + +++EP + QA + +W AM++E L N T TL PL + V C+
Sbjct: 239 KHRASLAAITSNIEPKNYVQAAQ*QEWLAAMEQEIQVLEENNTSTLEPLREGKKWVDCRP 418
Query: 1140 IYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQ 1199
+Y+I +G I KYKA+LVAK + QV+G D+ + K R +L++A ++G L
Sbjct: 419 VYKIIHKANGEIEKYKAQLVAKDFVQVEGEDF*D-LCLSNKDDNCRCLLTIAAAKG*QLH 595
Query: 1200 QLDVN 1204
+DV+
Sbjct: 596 LMDVS 610
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.317 0.131 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,829,237
Number of Sequences: 36976
Number of extensions: 1038466
Number of successful extensions: 13815
Number of sequences better than 10.0: 358
Number of HSP's better than 10.0 without gapping: 8299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12204
length of query: 1611
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1502
effective length of database: 4,984,343
effective search space: 7486483186
effective search space used: 7486483186
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0320a.8