BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0318.7
(448 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG454068 weakly similar to GP|22202804|dbj hypothetical protein~... 74 1e-13
BG453710 weakly similar to GP|21537057|gb| unknown {Arabidopsis ... 64 9e-11
AW693426 homologue to GP|23307580|dbj similar to serine/threonin... 42 4e-04
TC81158 similar to GP|9280664|gb|AAF86533.1| F21B7.15 {Arabidops... 40 0.001
CA917035 similar to GP|7303305|gb|A CG6061-PA {Drosophila melano... 40 0.002
TC78091 similar to GP|17104531|gb|AAL34154.1 unknown protein {Ar... 37 0.015
TC85602 similar to GP|437310|gb|AAA62850.1|| nodulin {Medicago t... 36 0.034
TC81272 similar to PIR|T05225|T05225 extensin homolog F17I5.160 ... 36 0.034
AW690594 similar to GP|23498163|emb hypothetical protein {Plasmo... 35 0.077
TC85985 similar to GP|5139695|dbj|BAA81686.1 expressed in cucumb... 35 0.077
TC84887 similar to SP|Q92HF5|IF2_RICCN Translation initiation fa... 35 0.077
BQ140761 weakly similar to GP|18076245|emb phosphophoryn {Rattus... 34 0.10
TC90584 similar to GP|22136810|gb|AAM91749.1 unknown protein {Ar... 34 0.10
TC88762 similar to GP|22136928|gb|AAM91808.1 unknown protein {Ar... 34 0.10
TC78212 similar to GP|17381160|gb|AAL36392.1 unknown protein {Ar... 34 0.10
TC89427 weakly similar to GP|4557063|gb|AAD22502.1| expressed pr... 33 0.17
TC85918 similar to GP|13562014|gb|AAK30610.1 fibroin 1 {Plectreu... 33 0.22
BG648462 weakly similar to GP|14253163|em VMP4 protein {Volvox c... 33 0.22
TC88579 similar to GP|22597156|gb|AAN03465.1 nucleolar histone d... 33 0.22
BQ750853 similar to GP|13562018|gb fibroin 3 {Plectreurys tristi... 33 0.22
>BG454068 weakly similar to GP|22202804|dbj hypothetical protein~predicted by
GeneMark.hmm etc. {Oryza sativa (japonica
cultivar-group)}, partial (5%)
Length = 673
Score = 73.6 bits (179), Expect = 1e-13
Identities = 33/60 (55%), Positives = 43/60 (71%)
Frame = +3
Query: 221 LIEQTGLHQLPYCSYPVTDAGLILALVERWHEETSSFHMPFGEMTITLDDVSALLHLPMG 280
+I +GL+ L +Y D GL++A RWH ETSSFH+P GEMTI LDD+S LLH+P+G
Sbjct: 273 VIRASGLYPLLETNYGQVDHGLLIAFSLRWHSETSSFHLPVGEMTIALDDISCLLHIPVG 452
>BG453710 weakly similar to GP|21537057|gb| unknown {Arabidopsis thaliana},
partial (6%)
Length = 651
Score = 64.3 bits (155), Expect = 9e-11
Identities = 28/41 (68%), Positives = 33/41 (80%)
Frame = -1
Query: 239 DAGLILALVERWHEETSSFHMPFGEMTITLDDVSALLHLPM 279
D +I A+ ERWH ETSSFH+P GEMTITLDDV LLH+P+
Sbjct: 474 DPSMIRAMCERWHTETSSFHLPMGEMTITLDDVYNLLHIPI 352
>AW693426 homologue to GP|23307580|dbj similar to serine/threonine
phosphatase PP7 {Oryza sativa (japonica
cultivar-group)}, partial (2%)
Length = 209
Score = 42.4 bits (98), Expect = 4e-04
Identities = 25/69 (36%), Positives = 36/69 (51%)
Frame = +1
Query: 346 WLVNQLGATLFASKSGGYHTTVYWIGMLEDLGRVCEYAWGAIALATLYDQLSQASRRGTA 405
+L+ +G TLF+ KS + V ++ DL YAWG ALA LYD L AS
Sbjct: 1 FLLCLVGCTLFSDKST-FVVNVAYLEFFRDLDSCGGYAWGVAALAHLYDNLRYASFHHMK 177
Query: 406 QMGGFTSLL 414
+ G+ +L+
Sbjct: 178 SISGYLTLI 204
>TC81158 similar to GP|9280664|gb|AAF86533.1| F21B7.15 {Arabidopsis
thaliana}, partial (6%)
Length = 890
Score = 40.4 bits (93), Expect = 0.001
Identities = 28/81 (34%), Positives = 39/81 (47%), Gaps = 1/81 (1%)
Frame = +1
Query: 60 DYPPSPTVEIPTVVSPPSPMVESSGEESSGEESSGE-ESSGEESSGEESSGEASSGMGGS 118
+ P +VE T+ P P VE +G E + S GE ES ES E S+ +S+ S
Sbjct: 328 EIPIEKSVERITLTGDP-PSVEVNGNEDKDDGSEGESESESSESESESSTSSSSTSGSDS 504
Query: 119 DEDSIPPPTVDDDVLPPEQGE 139
DED +DD E+G+
Sbjct: 505 DEDD------EDDAEDEEEGQ 549
>CA917035 similar to GP|7303305|gb|A CG6061-PA {Drosophila melanogaster},
partial (2%)
Length = 365
Score = 40.0 bits (92), Expect = 0.002
Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 4/140 (2%)
Frame = +2
Query: 123 IPPPTVDDDVLPPEQGEQGAQGGEEDLIQRLPPFPGGPVELSLLTYYADHKAPWAWHA-- 180
IP P V LPP + L++ LPP P S ++ +K +
Sbjct: 32 IPRPVVHSRSLPPPR---------TSLLESLPP----PAHSSS-RFFLSNKVRVVENTPR 169
Query: 181 LLRTDERYVDRRQLKV--ATAGGKVWNLAYDGDSDSHRRVRELIEQTGLHQLPYCSYPVT 238
+L +R +D + A G+ WN+ I +GL+ L +Y
Sbjct: 170 VLNNAKRIIDLKSALPPDVAAMGRFWNV---------------IMASGLYLLLETNYGQV 304
Query: 239 DAGLILALVERWHEETSSFH 258
D L++A +RWH ETSSFH
Sbjct: 305 DHSLLIAFSDRWHSETSSFH 364
>TC78091 similar to GP|17104531|gb|AAL34154.1 unknown protein {Arabidopsis
thaliana}, partial (52%)
Length = 1863
Score = 37.0 bits (84), Expect = 0.015
Identities = 25/88 (28%), Positives = 38/88 (42%), Gaps = 1/88 (1%)
Frame = +2
Query: 27 SSRRGDHAATSQAVEASAPVVSPPSPM-IEVPLVDYPPSPTVEIPTVVSPPSPMVESSGE 85
SS TS + + P+ PSPM PL PP+P VV PP P + +
Sbjct: 1247 SSTHPHATTTSSPIYSRQPIYDEPSPMKTSEPL---PPAPWDTQAPVVIPPPPSKYNQRQ 1417
Query: 86 ESSGEESSGEESSGEESSGEESSGEASS 113
+ ++ S S+G SS + G+ +
Sbjct: 1418 QFFEQQGSSHSSNGSSSSTDSLLGQTQN 1501
>TC85602 similar to GP|437310|gb|AAA62850.1|| nodulin {Medicago truncatula},
partial (48%)
Length = 833
Score = 35.8 bits (81), Expect = 0.034
Identities = 35/94 (37%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Frame = +1
Query: 45 PVVSPP--SPMIEVPLVDYPP-------SPTVEIPTVVSPP-------SPMVESSG--EE 86
PV PP P +E P V PP P VE P V PP P VE +
Sbjct: 451 PVEKPPVHKPPVEKPPVHKPPVEKLPVHKPPVEKPPVYKPPVEKPPVHKPPVEKPPVHKP 630
Query: 87 SSGEESSGEESSGEESSGEESSGEASSGMGGSDE 120
SSGE + + ++ E SS + SS EASS S E
Sbjct: 631 SSGEAN*IQATN*EVSSLQTSSREASSAQATS*E 732
>TC81272 similar to PIR|T05225|T05225 extensin homolog F17I5.160 -
Arabidopsis thaliana, partial (3%)
Length = 757
Score = 35.8 bits (81), Expect = 0.034
Identities = 38/126 (30%), Positives = 44/126 (34%), Gaps = 6/126 (4%)
Frame = +3
Query: 41 EASAPVVSPPSPMIEVPLVDYPPSPTVEIPTVVSPPSPMVESSGEESSGEESSGEESSGE 100
E P PP + VPL P+P P V P P +SG G +SG G
Sbjct: 60 EKDCPKPQPPVTVGPVPL----PTPIPTGPGGVPQPGP--GASGAPQPGPGASGAPQPGP 221
Query: 101 ESSGEESSGEASSG--MGGSDEDSIPPPTVDDDVLP-PEQGEQGAQ---GGEEDLIQRLP 154
+SG G +SG G P P D P P G GA G Q P
Sbjct: 222 GASGAPQPGPGASGAPQPGPGASGAPQPGPDASGAPQPGPGASGAPQPGPGASGAPQPAP 401
Query: 155 PFPGGP 160
G P
Sbjct: 402 EASGAP 419
>AW690594 similar to GP|23498163|emb hypothetical protein {Plasmodium
falciparum 3D7}, partial (10%)
Length = 633
Score = 34.7 bits (78), Expect = 0.077
Identities = 24/89 (26%), Positives = 37/89 (40%)
Frame = +3
Query: 80 VESSGEESSGEESSGEESSGEESSGEESSGEASSGMGGSDEDSIPPPTVDDDVLPPEQGE 139
VE EE E EE +E +E E +ED +++ E+ E
Sbjct: 42 VEEHNEEEDEGEVEEEEDEHDEEEEDEHDEEEEEEEEEEEEDEHDDEEEEEEEEEEEEEE 221
Query: 140 QGAQGGEEDLIQRLPPFPGGPVELSLLTY 168
+ GEED I R+ P P+ L +L++
Sbjct: 222 DDDEEGEEDEIDRISTLP-DPLLLHILSF 305
>TC85985 similar to GP|5139695|dbj|BAA81686.1 expressed in cucumber
hypocotyls {Cucumis sativus}, partial (42%)
Length = 892
Score = 34.7 bits (78), Expect = 0.077
Identities = 27/94 (28%), Positives = 40/94 (41%)
Frame = +3
Query: 42 ASAPVVSPPSPMIEVPLVDYPPSPTVEIPTVVSPPSPMVESSGEESSGEESSGEESSGEE 101
AS+PVV+P S + V PP+P V SPP+P+ SS +S + S E
Sbjct: 324 ASSPVVAPVSTPPKPAPVSSPPAPV----PVSSPPTPVPVSSPPTAS---TPAVTPSAEV 482
Query: 102 SSGEESSGEASSGMGGSDEDSIPPPTVDDDVLPP 135
+ S + + G P P ++ PP
Sbjct: 483 PAAAPSKSKKKTKKGKKHSAPAPSPALEGPPAPP 584
>TC84887 similar to SP|Q92HF5|IF2_RICCN Translation initiation factor IF-2.
{Rickettsia conorii}, partial (1%)
Length = 742
Score = 34.7 bits (78), Expect = 0.077
Identities = 21/68 (30%), Positives = 29/68 (41%)
Frame = -1
Query: 81 ESSGEESSGEESSGEESSGEESSGEESSGEASSGMGGSDEDSIPPPTVDDDVLPPEQGEQ 140
ES E+ + E + + EES +ASS +G S PP D E GE+
Sbjct: 451 ESKNEDKTEGSDPKENEESDPKAAEESDPKASSSLGSEGNLSSEPPAASVD---EESGEK 281
Query: 141 GAQGGEED 148
+ G ED
Sbjct: 280 EKRKGNED 257
>BQ140761 weakly similar to GP|18076245|emb phosphophoryn {Rattus
norvegicus}, partial (9%)
Length = 620
Score = 34.3 bits (77), Expect = 0.10
Identities = 14/44 (31%), Positives = 23/44 (51%)
Frame = +1
Query: 83 SGEESSGEESSGEESSGEESSGEESSGEASSGMGGSDEDSIPPP 126
S + S + S G +S + S + S ++SS SDE+ +P P
Sbjct: 253 SSDSDSSDSSDGSDSDSDASDDSDDSSDSSSDDSSSDEEPVPAP 384
>TC90584 similar to GP|22136810|gb|AAM91749.1 unknown protein {Arabidopsis
thaliana}, partial (18%)
Length = 686
Score = 34.3 bits (77), Expect = 0.10
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Frame = +3
Query: 66 TVEIPTVV------SPPSPMVESSGEESSGEESSGEESSGEESSGEESSGEASSGMGGSD 119
+ +IPT++ S S ++ SS S+ S G S ++ ASSG GG D
Sbjct: 63 SAKIPTMIKMGPTSSSSSSSSSAASSSSSSSSSAASSSKGSADSSSDTGSGASSGGGGDD 242
Query: 120 EDS 122
E++
Sbjct: 243 EEN 251
>TC88762 similar to GP|22136928|gb|AAM91808.1 unknown protein {Arabidopsis
thaliana}, partial (3%)
Length = 805
Score = 34.3 bits (77), Expect = 0.10
Identities = 29/101 (28%), Positives = 40/101 (38%)
Frame = +3
Query: 35 ATSQAVEASAPVVSPPSPMIEVPLVDYPPSPTVEIPTVVSPPSPMVESSGEESSGEESSG 94
+T+ + AS P SP S P SP +PT SPP+P SS ++ +S
Sbjct: 126 STTTSPPASTPASSPVSTTTSPPASTPASSP---VPTTTSPPAPTPASSPVSTNSPTASP 296
Query: 95 EESSGEESSGEESSGEASSGMGGSDEDSIPPPTVDDDVLPP 135
S ++ SS A G S PP T + P
Sbjct: 297 AGSLPAAATPSPSSTTA----GSPSPSSTPPGTRSSNETTP 407
Score = 34.3 bits (77), Expect = 0.10
Identities = 35/117 (29%), Positives = 48/117 (40%), Gaps = 6/117 (5%)
Frame = +3
Query: 7 SHASSEDVGATEDRHRRLHASSRRGDHAATSQAVEASAPV---VSPPSPM-IEVPLVDYP 62
S ++S V T ASS + + AS+PV SPP+P P+
Sbjct: 102 SPSASSPVSTTTSPPASTPASSPVSTTTSPPASTPASSPVPTTTSPPAPTPASSPVSTNS 281
Query: 63 P--SPTVEIPTVVSPPSPMVESSGEESSGEESSGEESSGEESSGEESSGEASSGMGG 117
P SP +P +P SP ++G S G SS E + G S G AS+ G
Sbjct: 282 PTASPAGSLPAAATP-SPSSTTAGSPSPSSTPPGTRSSNETTPG-RSIGVASASPSG 446
>TC78212 similar to GP|17381160|gb|AAL36392.1 unknown protein {Arabidopsis
thaliana}, partial (67%)
Length = 1739
Score = 34.3 bits (77), Expect = 0.10
Identities = 22/86 (25%), Positives = 37/86 (42%), Gaps = 1/86 (1%)
Frame = +1
Query: 7 SHASSEDVGATEDRHRRLHASSRRGDHAATSQAVEASAPVVSPPSPMIEVPLVDYP-PSP 65
+ + S +G H + SS G A + ++ A+APVV PP I P+ P P
Sbjct: 541 NRSPSPALGRNFVEHTQSVRSSSAGRPAVSVRSAAAAAPVVPPPKSTIRTPMAVPPIDPP 720
Query: 66 TVEIPTVVSPPSPMVESSGEESSGEE 91
T+ PP + + +G++
Sbjct: 721 TIRNKEKRFPPDITIRQLNSKDTGDQ 798
>TC89427 weakly similar to GP|4557063|gb|AAD22502.1| expressed protein
{Arabidopsis thaliana}, partial (50%)
Length = 753
Score = 33.5 bits (75), Expect = 0.17
Identities = 22/82 (26%), Positives = 37/82 (44%), Gaps = 7/82 (8%)
Frame = +1
Query: 81 ESSGEESSGEESSGEESSGEESSGEESSGEAS-------SGMGGSDEDSIPPPTVDDDVL 133
+ E+ + + ++ + E+ SG+E +A +G GGSD+D DDD
Sbjct: 313 DDDDEDDDDDVNDEDDDNDEDFSGDEDDEDADPEDDPVPNGAGGSDDDDEDDDDDDDD-- 486
Query: 134 PPEQGEQGAQGGEEDLIQRLPP 155
+ GE + EED + PP
Sbjct: 487 -NDDGEDEDEDEEEDDDEDQPP 549
>TC85918 similar to GP|13562014|gb|AAK30610.1 fibroin 1 {Plectreurys tristis},
partial (8%)
Length = 4117
Score = 33.1 bits (74), Expect = 0.22
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = -3
Query: 81 ESSGEESSGEESSGEESSGEESSGEESSGEASSGMGGSDEDSIPPPTVDDDVLPPEQGEQ 140
++ G+ + + G+E E ++ E + SS + S EDS+ P +DD P + +
Sbjct: 3191 DAQGQATPSSTTEGDEIKAELAAAEIEKSDDSSALNVSAEDSLKPDIIDDAQNPGVEKRR 3012
Query: 141 GAQG 144
++G
Sbjct: 3011 *SEG 3000
>BG648462 weakly similar to GP|14253163|em VMP4 protein {Volvox carteri f.
nagariensis}, partial (4%)
Length = 678
Score = 33.1 bits (74), Expect = 0.22
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = +1
Query: 45 PVVSPPSPMIEVPLVDYPPSPTVEIPTVVSPPSPMVESSGEESSGE 90
P PP P + PLV PP P P SPP P+ E E SG+
Sbjct: 481 PPSQPPLPETQPPLV--PPPPPPGSPPPPSPPLPVQEPVSVECSGQ 612
>TC88579 similar to GP|22597156|gb|AAN03465.1 nucleolar histone deacetylase
HD2-P39 {Glycine max}, partial (40%)
Length = 1069
Score = 33.1 bits (74), Expect = 0.22
Identities = 26/87 (29%), Positives = 36/87 (40%)
Frame = +2
Query: 57 PLVDYPPSPTVEIPTVVSPPSPMVESSGEESSGEESSGEESSGEESSGEESSGEASSGMG 116
PLVD + ++ P P ES + S + S EES EES EE + + S
Sbjct: 389 PLVDR--AQALKAANSGKPAEPEEESESDFSGSDISINEESDTEESESEEETPASES--- 553
Query: 117 GSDEDSIPPPTVDDDVLPPEQGEQGAQ 143
E+ P VD+ E G+Q
Sbjct: 554 ---EEETPAKKVDEGKNKKRTNETGSQ 625
>BQ750853 similar to GP|13562018|gb fibroin 3 {Plectreurys tristis}, partial
(0%)
Length = 692
Score = 33.1 bits (74), Expect = 0.22
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = -2
Query: 65 PTVEIPTVVSPPSPMVESSGEESSGEESSGEESSGEESSGEESSGEASSGMGGSDEDS 122
PT T+ PP P ++++ S+G ++ +S +SSG +GM GSD++S
Sbjct: 577 PTAARTTLAVPPPPTLQNT------TSSAGTATATSTASATQSSGAVFTGMVGSDDNS 422
Score = 28.1 bits (61), Expect = 7.2
Identities = 24/84 (28%), Positives = 38/84 (44%), Gaps = 4/84 (4%)
Frame = -2
Query: 37 SQAVEASAPVVSPPS---PMIEVPLVDYPPSPTVEIPTVVSPPSPMVES-SGEESSGEES 92
S AS P P + P + PP PT++ T + + + S +SSG
Sbjct: 631 SMETSASRPAAWPTTSVRPTAARTTLAVPPPPTLQNTTSSAGTATATSTASATQSSGAVF 452
Query: 93 SGEESSGEESSGEESSGEASSGMG 116
+G S +++S SSG A+ G+G
Sbjct: 451 TGMVGS-DDNSSSGSSGAAALGLG 383
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.314 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,472,824
Number of Sequences: 36976
Number of extensions: 206575
Number of successful extensions: 1960
Number of sequences better than 10.0: 134
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1815
length of query: 448
length of database: 9,014,727
effective HSP length: 99
effective length of query: 349
effective length of database: 5,354,103
effective search space: 1868581947
effective search space used: 1868581947
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0318.7