BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0316.6
(1449 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [impo... 137 4e-32
TC81386 similar to GP|10140689|gb|AAG13524.1 putative non-LTR re... 115 1e-25
TC83226 weakly similar to PIR|G86419|G86419 probable reverse tra... 112 1e-24
BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At... 104 3e-22
BG587113 weakly similar to PIR|A84888|A8 hypothetical protein At... 86 1e-16
BG586862 85 2e-16
BG647708 weakly similar to GP|13786450|gb| putative reverse tran... 83 7e-16
BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - ... 81 3e-15
TC93101 79 1e-14
BG586283 similar to GP|7267666|em RNA-directed DNA polymerase-li... 57 4e-14
AJ497561 weakly similar to GP|10140689|gb putative non-LTR retro... 56 9e-14
BG584442 73 7e-13
BQ148771 73 9e-13
BG646730 69 1e-11
BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-li... 67 4e-11
TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative ret... 65 2e-10
BG585866 62 1e-09
TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imp... 58 3e-08
TC81772 54 4e-07
BG456581 53 8e-07
>BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [imported] -
Arabidopsis thaliana, partial (7%)
Length = 687
Score = 137 bits (344), Expect = 4e-32
Identities = 64/142 (45%), Positives = 95/142 (66%)
Frame = +2
Query: 738 WLRFGDKNTNFFHQKATQRRKRNMIEKIRDDGGREFVDDPNIGRVLGDYFTSLFTSSSPS 797
WL+ GDKNT FFH KA+QRRK N I+K++D+ G + N+ R+L YF +LFTSS+P+
Sbjct: 5 WLKDGDKNTKFFHSKASQRRKVNEIKKLKDETGNWCKGEENVERLLITYFNNLFTSSNPT 184
Query: 798 GMQDAANLVANRVTAAHLEVLSEPFTKLDVEEALFQMHPTKAPGLDGFPALFYQRHWDII 857
+++ +V +++ H+ + FT+ +V EA+ QMHP KAPG DG PALF+Q++W I+
Sbjct: 185 AIEETCEVVKGKLSHEHIVWCEKEFTEEEVLEAINQMHPVKAPGPDGLPALFFQKYWHIV 364
Query: 858 GDDVAHFCLQVLNGTASPGSLH 879
G +V LQVLN + L+
Sbjct: 365 GKEVQQMVLQVLNNSMETEELN 430
>TC81386 similar to GP|10140689|gb|AAG13524.1 putative non-LTR retroelement
reverse transcriptase {Oryza sativa (japonica
cultivar-group)}, partial (1%)
Length = 798
Score = 115 bits (288), Expect = 1e-25
Identities = 71/265 (26%), Positives = 124/265 (46%), Gaps = 8/265 (3%)
Frame = -1
Query: 506 WQLVKSLCPQGRDVPWLCFGDFNDILSPTDKLGGDPPNYAHMQEVMATCSTCDLHDVGVS 565
W + ++ Q + + W C GDFN IL + G P M + +L +
Sbjct: 783 WSAISNIQTQHK-LSWCCIGDFNTILGSHEHQGSHTPARLPMLDFQQWSDVNNLFHLPTR 607
Query: 566 GYRFTWSNKRAVPGTVEERLDYALANDAWDALWPVTEVTHLPRYRSDHNPLLICCGSRGM 625
G FTW+N R +RLD ++ N L + RSDH P+L
Sbjct: 606 GSAFTWTNGRRGRNNTRKRLDRSIVNQLMIDNCESLSACTLTKLRSDHFPILF----ELQ 439
Query: 626 RKELQRTSMFRFEELWLQEEECKELVTEAWGE---GSAMG-LTAKLSSLGSSLKDWGREK 681
+ +Q +S F+F ++W +C ++ + W G M L KL +L LK W +
Sbjct: 438 TQNIQFSSSFKFMKMWSAHPDCINIIKQCWANQVVGCPMFVLNQKLKNLKEVLKVWNKNT 259
Query: 682 FGDIPKKISDTKALLQKLQWQTQS----EQVVRETKEAEIALDTLLMQQEIWWSQRSRAN 737
FG++ ++ + L +Q + S + ++ + K A++ L++ L +E++W ++S+ N
Sbjct: 258 FGNVHSQVDNAYKELDDIQVKIDSIGYSDVLMDQEKAAQLNLESALNIEEVFWHEKSKVN 79
Query: 738 WLRFGDKNTNFFHQKATQRRKRNMI 762
W GD+NT FFH+ A +R ++I
Sbjct: 78 WHCEGDRNTAFFHRVAKIKRTSSLI 4
>TC83226 weakly similar to PIR|G86419|G86419 probable reverse transcriptase
100033-105622 [imported] - Arabidopsis thaliana, partial
(2%)
Length = 885
Score = 112 bits (280), Expect = 1e-24
Identities = 67/225 (29%), Positives = 108/225 (47%), Gaps = 14/225 (6%)
Frame = +3
Query: 1219 WPWTVNGMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELAWRAI 1278
W G+YS KSGY L++ + ++++S+ + +WKK W +PR K L WR +
Sbjct: 6 WMHNPTGIYSVKSGYNTLRTWQTQQINNTSTSSD-ETLIWKKIWSLHTIPRHKVLLWRIL 182
Query: 1279 KGILPVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLWFASPLAIRVASFSSL 1338
LPVR SLR RG+ CP C + ET H+F+ CP + +WF S L I + +
Sbjct: 183 NDSLPVRSSLRKRGIQCYPLCPRCHSKTETITHLFMSCPLSKRVWFGSNLCINFDNLPNP 362
Query: 1339 HELAVAFLSTA-EEDFIPV-FQAWLYTLWEARNALIFNNKPVSMESLLQRLSTLL----- 1391
+ + + + +++ I + A +Y LW ARN + ++ + ++QR S +
Sbjct: 363 NFIN*LYEAIL*KDECITI*IAAIIYNLWHARNLSVLEDQTILEMDIIQRASNCISDYKQ 542
Query: 1392 -------EMPTLVYAPVGRAQRDMASSWSRPQRGTTKVNVDASFQ 1429
M Y P + + + W RP G KVN DA+ Q
Sbjct: 543 ANTQAPPSMARTGYDPRSQHRPAKNTKWKRPNLGLVKVNTDANLQ 677
>BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
[imported] - Arabidopsis thaliana, partial (16%)
Length = 794
Score = 104 bits (259), Expect = 3e-22
Identities = 51/144 (35%), Positives = 79/144 (54%)
Frame = +3
Query: 726 QEIWWSQRSRANWLRFGDKNTNFFHQKATQRRKRNMIEKIRDDGGREFVDDPNIGRVLGD 785
+EI+W Q+SR NWLR GD+NT FFH RR +N I + DD +E+ + ++GR+
Sbjct: 123 EEIFWMQKSRLNWLRSGDRNTKFFHAVTKNRRAQNRILSLIDDDDKEWFVEEDLGRLADS 302
Query: 786 YFTSLFTSSSPSGMQDAANLVANRVTAAHLEVLSEPFTKLDVEEALFQMHPTKAPGLDGF 845
+F L++S + N + VT L ++ +V EA+F ++P K PG DG
Sbjct: 303 HFKLLYSSEDVGITLEDWNSIPAIVTEEQNAQLMAQISREEVREAVFDINPHKCPGPDGM 482
Query: 846 PALFYQRHWDIIGDDVAHFCLQVL 869
F+Q+ WD +GDD+ + L
Sbjct: 483 NVFFFQQFWDTMGDDLTSMAQEFL 554
>BG587113 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
[imported] - Arabidopsis thaliana, partial (10%)
Length = 767
Score = 85.5 bits (210), Expect = 1e-16
Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Frame = -3
Query: 1111 DAKKGYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWL---------PGG---- 1157
+A G SYAW SI ++ + +GA+ IG+G+ +W P
Sbjct: 759 NAPLGSWASYAWRSIHSAQHLIKQGAKVIIGNGENTNIWEREMAWKLTCVTNHPNKHSSR 580
Query: 1158 ---APLLFREDLVAEWGIHLVSDLIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGD 1214
AP L+ + D + + N L+ +F T ++IL++ G+
Sbjct: 579 AY*APTLYGYEGCRS------DDPMRRER---NANLINSIFPEGTRRKILSIHPQGPIGE 427
Query: 1215 DCLFWPWTVNGMYSSKSGYQLLQSLTQEGVSSSSSGGNL-HPSL---WKKFWRSEALPRC 1270
D W ++ +G YS KSGY + ++ +++++ G + PSL +++ W+ P+
Sbjct: 426 DSYSWEYSKSGHYSVKSGYYVQTNI----IAAANQRGTVDQPSLDDLYQRVWKYNTSPKV 259
Query: 1271 KELAWRAIKGILPVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLWFASPL 1328
+ WR I LP ++R R + D C CG E ET +H+ CP + +W SP+
Sbjct: 258 RHFLWRCISNSLPTAANMRSRHISKDGSCSRCGMESETVNHILFQCPYARLIWATSPI 85
>BG586862
Length = 804
Score = 84.7 bits (208), Expect = 2e-16
Identities = 47/135 (34%), Positives = 67/135 (48%), Gaps = 2/135 (1%)
Frame = -1
Query: 1259 KKFWRSEALPRCKELAWRAIKGILPVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPA 1318
+K W + +PR K WR + LPV+ L RG+ CP C + ET H+F+ C
Sbjct: 660 EKVWGIKTIPRHKSFLWRLLHNALPVKDELHKRGIRCSLLCPRCESKIETVQHLFLNCEV 481
Query: 1319 VQPLWFASPLAIRVASFSSL--HELAVAFLSTAEEDFIPVFQAWLYTLWEARNALIFNNK 1376
Q WF S L I S L H+ F+ +E+ I A LY++W ARN +F N
Sbjct: 480 TQKEWFGSQLGINFHSSGVLHFHDWITNFILKNDEETIIALTALLYSIWHARNQKVFENI 301
Query: 1377 PVSMESLLQRLSTLL 1391
V + ++QR S+ L
Sbjct: 300 DVPGDVVIQRASSSL 256
>BG647708 weakly similar to GP|13786450|gb| putative reverse transcriptase
{Oryza sativa}, partial (9%)
Length = 708
Score = 83.2 bits (204), Expect = 7e-16
Identities = 43/96 (44%), Positives = 64/96 (65%), Gaps = 4/96 (4%)
Frame = +1
Query: 865 CLQVLNGT----ASPGSLHGIKVAQKAPVISHLLFADDNILFARATINEAACISDILSTY 920
C VL+G + +LHGI+VA+ P I+HLLFADD++LFARA + EAA I +L +Y
Sbjct: 58 CANVLSGLLKREGNKQNLHGIQVARSDPKITHLLFADDSLLFARANLTEAATIMQVLHSY 237
Query: 921 EKASGQVINLDKSMLSVSRNVLDTSFNELKQLLGVK 956
+ ASGQ++N +KS +S S+NV + + Q + +K
Sbjct: 238 QSASGQLVNFEKSEVSYSQNVPNQEKEMICQQIAIK 345
Score = 37.7 bits (86), Expect(2) = 0.002
Identities = 20/77 (25%), Positives = 40/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 1175 VSDLIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFWPWTVNGMYSSKSGYQ 1234
V +LI WN L+ F +I+ +P+ + + +D + W W +G+YS +S +
Sbjct: 402 VDELIDYDTKQWNRDLIFHSFNNYAAHQIIKIPLSMRQPEDKIIWHWEKDGIYSVRSAHH 581
Query: 1235 LL--QSLTQEGVSSSSS 1249
L ++ + + SSS++
Sbjct: 582 ALCDENFSNQAESSSAT 632
Score = 23.1 bits (48), Expect(2) = 0.002
Identities = 7/23 (30%), Positives = 11/23 (47%)
Frame = +2
Query: 1254 HPSLWKKFWRSEALPRCKELAWR 1276
+P +WK W + A + WR
Sbjct: 632 NPVIWKAIWNTPASRSVQNFLWR 700
>BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - Arabidopsis
thaliana, partial (17%)
Length = 677
Score = 81.3 bits (199), Expect = 3e-15
Identities = 43/125 (34%), Positives = 63/125 (50%)
Frame = +2
Query: 726 QEIWWSQRSRANWLRFGDKNTNFFHQKATQRRKRNMIEKIRDDGGREFVDDPNIGRVLGD 785
+E +W Q+SR W GD N F+H QR RN I + D G ++ + +V D
Sbjct: 41 EEDYWQQKSRNMWHISGDLNKKFYHALTKQRHARNRIVGLYDYDGNWITEEQGVEKVAVD 220
Query: 786 YFTSLFTSSSPSGMQDAANLVANRVTAAHLEVLSEPFTKLDVEEALFQMHPTKAPGLDGF 845
YF LF ++P+G + + + +T + L T+ +V ALF MHP KAPG DG
Sbjct: 221 YFEDLFQRTTPTGFDGFLDEITSSITPQMNQRLLRLATEEEVRLALFIMHPEKAPGPDGM 400
Query: 846 PALFY 850
L +
Sbjct: 401 TTLLF 415
>TC93101
Length = 675
Score = 79.3 bits (194), Expect = 1e-14
Identities = 50/168 (29%), Positives = 80/168 (46%), Gaps = 20/168 (11%)
Frame = -1
Query: 1282 LPVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLWFASPLAIRVASFSSLHEL 1341
LPVR L RG++ CP C ET +H+F+ C Q +WF S L+IR S+++
Sbjct: 663 LPVRXELNKRGVNCPPLCPRCYFNLETTNHIFMSCERTQRVWFGSQLSIRFPDNSTINFS 484
Query: 1342 AVAF--LSTAEEDFIPVFQAWLYTLWEARNALIFNNKPVSMESLLQ----------RLST 1389
F +S E+ I A Y++W ARN IF N+ VS ++++Q + +
Sbjct: 483 DWLFDAISNQTEEIIIKISAITYSIWHARNKAIFENQFVSEDTIIQ*AQNSILAYEQATI 304
Query: 1390 LLEMPTLVYAPVG--------RAQRDMASSWSRPQRGTTKVNVDASFQ 1429
+ P +V + + R + ++ S W +P K N DA+ Q
Sbjct: 303 KPQNPNIVLSSLSATSNTNTTRRRSNVRSRWQKPLNNILKANCDANLQ 160
>BG586283 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
{Arabidopsis thaliana}, partial (7%)
Length = 774
Score = 57.0 bits (136), Expect(2) = 4e-14
Identities = 34/94 (36%), Positives = 49/94 (51%)
Frame = +2
Query: 382 SSMRLLMWNCRGLGNPQAVLALKGLIHSKAPDVVFAMETKMYTSEVLKNRGMGGLPNVFP 441
SS+ + WNC+G+G+ V L+ +PD++F METK +V K N F
Sbjct: 197 SSLVNMCWNCQGIGSDLTVRRLREFQTKDSPDIMFLMETKRKDEDVYKMYRGTEFTNHFT 376
Query: 442 VQCAGSGRSRAGGLFLMWSSEVEVDILSASLNHI 475
V G +GGL L W V+V+IL++S N I
Sbjct: 377 VPPVG----LSGGLALSWKDNVQVEILASSANVI 466
Score = 40.4 bits (93), Expect(2) = 4e-14
Identities = 17/45 (37%), Positives = 29/45 (63%)
Frame = +3
Query: 495 GFPEEQNKVRTWQLVKSLCPQGRDVPWLCFGDFNDILSPTDKLGG 539
G P+ +++ + W + ++ Q RD WL GDFND+L ++K+GG
Sbjct: 519 GVPQPEHRAKFWDELSTIGAQ-RDGAWLLTGDFNDLLDNSEKVGG 650
>AJ497561 weakly similar to GP|10140689|gb putative non-LTR retroelement
reverse transcriptase {Oryza sativa (japonica
cultivar-group)}, partial (2%)
Length = 621
Score = 56.2 bits (134), Expect(2) = 9e-14
Identities = 24/62 (38%), Positives = 38/62 (60%)
Frame = +2
Query: 1093 TLLAQIFKAAYFPRTDLWDAKKGYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDN 1152
+LL++I K YFP+ D A G+ PS+ W S+L ++ + G RW IGDG ++ V +
Sbjct: 410 SLLSKILKFKYFPQWDFSYANLGHNPSFTWRSLLSTQSLLTLGHRWMIGDGSQINVSSMS 589
Query: 1153 WL 1154
W+
Sbjct: 590 WI 595
Score = 40.0 bits (92), Expect(2) = 9e-14
Identities = 17/38 (44%), Positives = 28/38 (72%)
Frame = +3
Query: 1054 KWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQP 1091
+++ L RHK GGLG ++ + FN+S++GK W++ SQP
Sbjct: 300 EFNNLARHKSVGGLGLQN-QEFNISMLGKQRWKLLSQP 410
>BG584442
Length = 775
Score = 73.2 bits (178), Expect = 7e-13
Identities = 39/96 (40%), Positives = 59/96 (60%), Gaps = 1/96 (1%)
Frame = +1
Query: 988 KKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAG-DAS 1046
KK+ + K LS+ EV+IK Q+I SYVMS F+L +S E++ ++ F W +
Sbjct: 379 KKINF*RNKCLSKVM*EVMIKYALQSISSYVMSIFLLLNSQVDEIEKIMNTFSWVHVGEN 558
Query: 1047 RRGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGK 1082
R+G+HW+ L HK+ GG+GF DF FN+ ++GK
Sbjct: 559 RKGMHWMS*EKLFVHKNYGGMGFTDFTTFNIPMLGK 666
>BQ148771
Length = 680
Score = 72.8 bits (177), Expect = 9e-13
Identities = 63/254 (24%), Positives = 99/254 (38%), Gaps = 3/254 (1%)
Frame = -3
Query: 970 IIGKSKSQIFNFVKDRVWKKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLC 1029
++ KS + V +V L WK LS A R L KSV +A+P Y M ++P +
Sbjct: 633 LVRKSTKKSRFSVYYQVHVMLANWKANHLSLARRVTLAKSVIEAVPLYPMMTTIIPKACI 454
Query: 1030 AELDGMIAKFFWAGDASRRGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYS 1089
E+ + KF W R H V W T+ + K GLG R N + + K W IYS
Sbjct: 453 EEIQKLQRKFVWGDTEVSRRYHAVGWETMSKPKTIYGLGLRRLDVMNKACIMKLGWSIYS 274
Query: 1090 QPDTLLAQIFKAAYFPRTDLWDAKKGYRP--SYAWASILRSKLIFDKGARWRIGDGKKVQ 1147
++L ++ + Y R++ + +P S W ++ V+
Sbjct: 273 GSNSLCTEVMRGKY-QRSESLEEIFLEKPTDSSLWKAL--------------------VK 157
Query: 1148 VWRDNWLPGGAPLLFREDLVAEWGIHLVSDLIVQPHGGWNVPLLEMVFAPATVQRILAVP 1207
+W + + +V +G WN L+ +QRI+A+
Sbjct: 156 LWPE-----------------------IERNLVDSNGNWNWEKLKQWLPFDVLQRIMAIA 46
Query: 1208 VPLFR-GDDCLFWP 1220
P G D L WP
Sbjct: 45 TPHENLGSDKLIWP 4
>BG646730
Length = 799
Score = 69.3 bits (168), Expect = 1e-11
Identities = 40/135 (29%), Positives = 66/135 (48%)
Frame = +1
Query: 1115 GYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLPGGAPLLFREDLVAEWGIHL 1174
G +PSYAW S+ K + D G+RW I +G+ V++W+D+WLP +V
Sbjct: 388 GNQPSYAWRSMFNIKDVIDLGSRWSISNGQNVRIWKDDWLPNQTGFKVCSPMVDFEEATC 567
Query: 1175 VSDLIVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFWPWTVNGMYSSKSGYQ 1234
+S+LI L+ VF+ ++IL +P+ D W + YS +S +
Sbjct: 568 ISELIDTNTKSSKRDLVRNVFSAFEAKQILNIPLSWRLWPDRRILYWERDRNYSVRSAHH 747
Query: 1235 LLQSLTQEGVSSSSS 1249
L++ T++ SSS
Sbjct: 748 LIKVATKDSPEVSSS 792
>BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
{Arabidopsis thaliana}, partial (18%)
Length = 789
Score = 67.4 bits (163), Expect = 4e-11
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Frame = -3
Query: 865 CLQVLNGTASP----GSLHGIKVAQKAPVISHLLFADDNILFARATINEAACISDILSTY 920
C +VL+G G+L G+KVA+ P I+HLLFADD + F ++ + A + I+ Y
Sbjct: 340 CTEVLSGLCQQALRKGTLPGVKVARNCPPINHLLFADDTMFFGKSNASSCAILLSIMDKY 161
Query: 921 EKASGQVINLDKSMLSVSRNVLDTSFNELKQLLGVKAVESFDKYLGLPTII 971
ASG+ IN KS ++ S + +K L + KYLG I+
Sbjct: 160 RAASGRCIN*TKSAITFSSKTSQAIIDRVKGELKIAKEGGTGKYLGYRNIL 8
>TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative retroelement
{Oryza sativa (japonica cultivar-group)}, partial (1%)
Length = 625
Score = 64.7 bits (156), Expect = 2e-10
Identities = 40/108 (37%), Positives = 60/108 (55%)
Frame = +3
Query: 893 LLFADDNILFARATINEAACISDILSTYEKASGQVINLDKSMLSVSRNVLDTSFNELKQL 952
LLF + R + A + +IL YE+ SG+ I+L KS + SRNV D + +
Sbjct: 279 LLFEGAPLRSLRVEEHHAQIMKNILILYEEDSGKAISLRKS*IYCSRNVPDILKTSITYI 458
Query: 953 LGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDRVWKKLKGWKEKFLSR 1000
LGV+ + KYLGLP++IG+ ++ F+ +K VW+ K KFL R
Sbjct: 459 LGVQFMLGTCKYLGLPSMIGRDRTTTFSSIKGGVWQ-----KNKFLER 587
>BG585866
Length = 828
Score = 62.4 bits (150), Expect = 1e-09
Identities = 60/215 (27%), Positives = 82/215 (37%), Gaps = 12/215 (5%)
Frame = +3
Query: 1125 ILRSKLIFDKGARWRIGDGKKVQVWRDNWLPGG-----APLLFREDLVAEWGIHL-VSDL 1178
I+R K + G WR G G W NW G AP + DL HL V D+
Sbjct: 84 IIRDKNVLKSGYTWRAGSGNS-SFWYTNWSSLGLLGTQAPFVDIHDL------HLTVKDV 242
Query: 1179 IVQPHGGWNVPLLEMVFAPATVQRILAVPVPLFRGD--DCLFWPWTVNGMYSSKSGYQLL 1236
GG + L + P + ++ F D WP NG+Y++KSGY +
Sbjct: 243 FTT--GGQHTQSLYTIL-PTDIAEVINNTHLNFNASIGDAYIWPHNSNGVYTAKSGYSWI 413
Query: 1237 QSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELAWRAIKGILPVRVSLRIRGMDVD 1296
S T+ N + S W WR + + K W A +P L R M
Sbjct: 414 LSQTETV--------NYNNSSWSWIWRLKIPEKYKFFLWLACHNAVPTLSLLNHRNMVNS 569
Query: 1297 DRCPLCGCEEETNDHVFVCCPAVQPLW----FASP 1327
C CG EE+ H C + +W F+SP
Sbjct: 570 AICSRCGEHEESFFHCVRDCRFSKIIWHKIGFSSP 674
>TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imported] -
Arabidopsis thaliana, partial (6%)
Length = 951
Score = 57.8 bits (138), Expect = 3e-08
Identities = 39/131 (29%), Positives = 62/131 (46%)
Frame = +2
Query: 889 VISHLLFADDNILFARATINEAACISDILSTYEKASGQVINLDKSMLSVSRNVLDTSFNE 948
V+SHL FA+D +L + L + SG +N KS L V N+ + +E
Sbjct: 539 VVSHLQFANDTLLLETKNWANIRALRAALVIF*AMSGLKVNFHKSGL-VCVNIAPSWLSE 715
Query: 949 LKQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDRVWKKLKGWKEKFLSRAGREVLIK 1008
+L K + YLG+P + + + +R+ +L GW +FLS GR VL+K
Sbjct: 716 AASVLSWKVGKVPFLYLGMPIEGNSRRLSFWEPIVNRIKARLTGWNSRFLSFGGRLVLLK 895
Query: 1009 SVAQAIPSYVM 1019
SV ++ Y +
Sbjct: 896 SVLTSLSVYAL 928
>TC81772
Length = 982
Score = 53.9 bits (128), Expect = 4e-07
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = -2
Query: 1115 GYRPSYAWASILRSKLIFDKGARWRIGDGKKVQVWRDNWLPG 1156
G+ PSY W S+ +++ ++G W+IGDG + +W D+WL G
Sbjct: 714 GHNPSYIWCSV*TLRMVLEEGHHWKIGDGSSINIWTDHWLSG 589
>BG456581
Length = 683
Score = 53.1 bits (126), Expect = 8e-07
Identities = 48/189 (25%), Positives = 74/189 (38%), Gaps = 23/189 (12%)
Frame = +2
Query: 1262 WRSEALPRCKELAWRAIKGILPVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQP 1321
W S P + WR LP +L RG + C C + ET+DH+F+ C V
Sbjct: 83 WNSCIPPSHSFICWRLAHDRLPTDDNLSSRGCALVSMCSFCLEQVETSDHLFLRCKFVVT 262
Query: 1322 LWFASPLAIRVA-SFSSLHELAVAF----LSTAEEDFIPVFQAWLYTLWEARNALIFNNK 1376
LW +RV FSS L + S + ++ ++++W ARN + F++
Sbjct: 263 LWSWLCSQLRVGLDFSSFKALLSSLPRHCSSQVRDLYVAAVVHMVHSIWWARNNVRFSSA 442
Query: 1377 PVSMESLLQRLSTLLEMPTLV-----------------YAPVGRAQRDMAS-SWSRPQRG 1418
VS ++ R+ L+ + V P R+ +M S W P
Sbjct: 443 KVSAHAVQVRVHALIGLSGAVSTGKCIAADAAILDVFRIPPHRRSMXEMVSVCWKPPSAP 622
Query: 1419 TTKVNVDAS 1427
K N D S
Sbjct: 623 WVKGNTDGS 649
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.334 0.146 0.511
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,536,100
Number of Sequences: 36976
Number of extensions: 847330
Number of successful extensions: 6603
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 3589
Number of HSP's successfully gapped in prelim test: 321
Number of HSP's that attempted gapping in prelim test: 2711
Number of HSP's gapped (non-prelim): 4306
length of query: 1449
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1341
effective length of database: 5,021,319
effective search space: 6733588779
effective search space used: 6733588779
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0316.6