BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0316.10
(359 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC89844 similar to GP|3258570|gb|AAC24380.1| Unknown protein {Ar... 348 2e-96
TC89392 weakly similar to GP|21592565|gb|AAM64514.1 latex-abunda... 257 4e-69
BM779002 weakly similar to GP|3258570|gb| Unknown protein {Arabi... 199 2e-51
BF640135 similar to GP|3258570|gb|A Unknown protein {Arabidopsis... 188 3e-48
AL369695 similar to GP|3258570|gb|A Unknown protein {Arabidopsis... 152 3e-37
TC93193 similar to GP|9955575|emb|CAC05502.1 latex-abundant prot... 91 9e-19
TC86044 similar to GP|4235430|gb|AAD13216.1| latex-abundant prot... 91 9e-19
TC92303 similar to GP|21592565|gb|AAM64514.1 latex-abundant prot... 78 5e-15
BQ123787 similar to GP|9955575|emb latex-abundant protein-like {... 75 3e-14
BQ139029 weakly similar to GP|21592565|gb| latex-abundant protei... 51 8e-07
BG448416 similar to GP|13509833|em unnamed protein product {Zea ... 48 5e-06
TC88458 homologue to GP|16323143|gb|AAL15306.1 At1g32540/T9G5_1 ... 42 5e-04
TC88911 weakly similar to GP|13926280|gb|AAK49610.1 AT5g14920/F2... 41 6e-04
TC77456 similar to PIR|T10580|T10580 zinc-finger protein Lsd1 - ... 41 8e-04
BQ141541 similar to GP|334068|gb|A ORF2 {Pseudorabies virus}, pa... 38 0.005
TC88065 similar to SP|Q9LT02|ATX1_ARATH Potential cation-transpo... 37 0.009
BQ144502 weakly similar to GP|6523547|emb hydroxyproline-rich gl... 37 0.015
TC86766 weakly similar to PIR|T06291|T06291 extensin homolog T9E... 36 0.020
BQ144407 weakly similar to GP|6523547|emb| hydroxyproline-rich g... 36 0.020
TC81043 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproli... 36 0.026
>TC89844 similar to GP|3258570|gb|AAC24380.1| Unknown protein {Arabidopsis
thaliana}, partial (45%)
Length = 680
Score = 348 bits (892), Expect = 2e-96
Identities = 161/193 (83%), Positives = 175/193 (90%), Gaps = 4/193 (2%)
Frame = +1
Query: 1 MYSNMLVNCSNCRTPLQLPPGAGSIRCALCQAVTPVPDPRALPPQP----YAVPGPSPSF 56
MYSN+LVNCSNC TPLQLPPGA SIRCALCQA+T V DPRALPPQP +A P PSP
Sbjct: 100 MYSNILVNCSNCHTPLQLPPGAASIRCALCQAITLVADPRALPPQPASSPHAPPPPSPYN 279
Query: 57 HAPPGPPPSFHGRKKAVIVGISYRYSRHELKGCINDAKCMKYLLINKFKFPEPSIIMLTE 116
HAPPGP P+ HGRKKAVIVGISY++SRHELKGCINDAKCM+YLLINK+ FP+ SIIMLTE
Sbjct: 280 HAPPGPLPNVHGRKKAVIVGISYKFSRHELKGCINDAKCMRYLLINKYNFPDSSIIMLTE 459
Query: 117 EEDPRGPKFPSKHNIRMAMYWLAQGCQPGDSLVFHYSGHGSQQRNYSGDEADGYDETICP 176
EEDP GPKFP+KHNIRMAM+WLAQGCQPGDSLVFHYSGHGSQQRNY+G+EADG+DETICP
Sbjct: 460 EEDPHGPKFPNKHNIRMAMFWLAQGCQPGDSLVFHYSGHGSQQRNYNGEEADGFDETICP 639
Query: 177 FDFETQGMIVDDE 189
DFETQGMIVDDE
Sbjct: 640 LDFETQGMIVDDE 678
>TC89392 weakly similar to GP|21592565|gb|AAM64514.1 latex-abundant protein
putative {Arabidopsis thaliana}, partial (37%)
Length = 1359
Score = 257 bits (657), Expect = 4e-69
Identities = 138/322 (42%), Positives = 193/322 (59%), Gaps = 5/322 (1%)
Frame = +3
Query: 43 PPQPYAVPGPSPSFHAPPGPPPSFHGRKKAVIVGISYRYSR--HELKGCINDAKCMKYLL 100
PP Y +P S + PP PPS G K+AV+ GISY + +LKG +N+A+CMK+ L
Sbjct: 270 PPTTYEIPVHS---YYPPLRPPSAFGNKRAVLFGISYANTATAKKLKGSVNNARCMKHFL 440
Query: 101 INKFKFPEPSIIMLTEEEDPRGPKFPSKHNIRMAMYWLAQGCQPGDSLVFHYSGHGSQQR 160
I+K FP SI MLT++ + + PSK N+RMAM WL +GC+PGDSLVF++ GH S+ +
Sbjct: 441 IDKLGFPGNSICMLTDDSEEKNT-IPSKSNMRMAMRWLVEGCKPGDSLVFYFCGHASRVK 617
Query: 161 NYSGDEADGYDETICPFDFETQGMIVDDEINAALVRPLTHGVRLHALIDACHSGTVLDLP 220
+ + DE DGYDE ICP D+E +GMI+DDEINA +VRPL HG +LHAL+DA SGT+LD+P
Sbjct: 618 DRNVDEVDGYDEAICPVDYEQEGMILDDEINATIVRPLPHGAKLHALVDASFSGTILDIP 797
Query: 221 YLCRMNSSGHYAWEDHRPRSGVWKGSSGGEVICFSGCDDHQTSADTSALSKITSTGAMTF 280
++C+MN + W+DHR R KG+ GG +C S CDD A + A+T+
Sbjct: 798 FVCKMNRIASFGWKDHRHRRAGNKGTRGGLAVCISACDDSDGKAGRKS--------ALTY 953
Query: 281 CFIQAIERGHGATYGSILNAMRTAIKNVGGSGGGGGDVVTSLLSMLLTGGSGLSVGGLRQ 340
F+Q ++ TYG +LN M I+ + L G + +Q
Sbjct: 954 SFLQIMQDVPKLTYGRLLNDMLFTIQ-------------WAKAGKLELKGQDFARNTWKQ 1094
Query: 341 ---EPQLTACEMFDVYSKPFSL 359
EPQL++ E FD+ +K F +
Sbjct: 1095NTHEPQLSSTEKFDISTKLFQI 1160
>BM779002 weakly similar to GP|3258570|gb| Unknown protein {Arabidopsis
thaliana}, partial (36%)
Length = 717
Score = 199 bits (505), Expect = 2e-51
Identities = 108/222 (48%), Positives = 141/222 (62%), Gaps = 3/222 (1%)
Frame = +3
Query: 68 GRKKAVIVGISYRYSRHELKGCINDAKCMKYLLINKFKFPEPSIIMLTEEEDPRGPKFPS 127
G K+AV+ G++YR R+ LKG +ND MK LL N F FP SI +LTEE+ P+
Sbjct: 42 GNKRAVLCGVTYRRRRYMLKGTVNDVVNMKKLLTNNFAFPIESIRVLTEEQKDLN-FLPT 218
Query: 128 KHNIRMAMYWLAQGCQPGDSLVFHYSGHGSQQRNYS-GDEADGYDETICPFDFETQGMIV 186
K NI ++ WL + C+ GDSLVF++SGHG+QQ DE DG+DETICP DF +GMI
Sbjct: 219 KRNIMESLKWLVKDCKFGDSLVFYFSGHGTQQPAIDKDDELDGFDETICPVDFIREGMIT 398
Query: 187 DDEINAALVRPLTHGVRLHALIDACHSGTVLDLPYLCRMNSSGHYAWEDHRPRS--GVWK 244
DDEIN+ +VRPL GV+LHA+IDACHSGT LDL ++ W ++ P S V K
Sbjct: 399 DDEINSTIVRPLKEGVKLHAIIDACHSGTTLDL--------IDNWKWMNNIPPSIDPVTK 554
Query: 245 GSSGGEVICFSGCDDHQTSADTSALSKITSTGAMTFCFIQAI 286
++GG ICFS C+D Q +ADT+A G MT+ + I
Sbjct: 555 RTNGGVAICFSACEDCQMAADTAAFGGKEMNGVMTYLLTKNI 680
>BF640135 similar to GP|3258570|gb|A Unknown protein {Arabidopsis thaliana},
partial (14%)
Length = 679
Score = 188 bits (477), Expect = 3e-48
Identities = 100/197 (50%), Positives = 132/197 (66%), Gaps = 3/197 (1%)
Frame = +1
Query: 75 VGISYRYSRHELKGCINDAKCMKYLLINKFKFPEPSIIMLTEEEDPRGPKFPSKHNIRMA 134
V + YR R+ LKG +ND MK LL N F FP SI +LTEE+ P+K NI +
Sbjct: 82 VELXYRRRRYMLKGTVNDVVNMKKLLTNNFAFPIESIRVLTEEQKDLN-FLPTKRNIMES 258
Query: 135 MYWLAQGCQPGDSLVFHYSGHGSQQRNYS-GDEADGYDETICPFDFETQGMIVDDEINAA 193
+ WL + C+ GDSLVF++SGHG+QQ DE DG+DETICP DF +GMI DDEIN+
Sbjct: 259 LKWLVKDCKFGDSLVFYFSGHGTQQPAIDKDDELDGFDETICPVDFIREGMITDDEINST 438
Query: 194 LVRPLTHGVRLHALIDACHSGTVLDLPYLCRMNSSGHYAWEDHRPRS--GVWKGSSGGEV 251
+VRPL GV+LHA+IDACHSGT LDL Y+ + ++ ++ W ++ P S V K ++GG
Sbjct: 439 IVRPLKEGVKLHAIIDACHSGTTLDLMYVYKKHND-NWKWMNNIPPSIDPVTKRTNGGVA 615
Query: 252 ICFSGCDDHQTSADTSA 268
ICF C+D Q +ADT+A
Sbjct: 616 ICFXACEDCQMAADTAA 666
>AL369695 similar to GP|3258570|gb|A Unknown protein {Arabidopsis thaliana},
partial (23%)
Length = 505
Score = 152 bits (383), Expect = 3e-37
Identities = 79/96 (82%), Positives = 85/96 (88%), Gaps = 1/96 (1%)
Frame = +3
Query: 265 DTSALSKITSTGAMTFCFIQAIER-GHGATYGSILNAMRTAIKNVGGSGGGGGDVVTSLL 323
DTSALSKITSTGAMTFCFIQA+ER G GATYG+IL +MR+AIKN G G GGGDVVTSL+
Sbjct: 3 DTSALSKITSTGAMTFCFIQAVERSGPGATYGTILTSMRSAIKNAGSGGSGGGDVVTSLV 182
Query: 324 SMLLTGGSGLSVGGLRQEPQLTACEMFDVYSKPFSL 359
SMLLTGGS L+ GGLRQEPQLTACE FDVY KPFSL
Sbjct: 183 SMLLTGGS-LTTGGLRQEPQLTACEAFDVYRKPFSL 287
>TC93193 similar to GP|9955575|emb|CAC05502.1 latex-abundant protein-like
{Arabidopsis thaliana}, partial (45%)
Length = 744
Score = 90.5 bits (223), Expect = 9e-19
Identities = 53/152 (34%), Positives = 83/152 (53%), Gaps = 2/152 (1%)
Frame = +1
Query: 69 RKKAVIVGISYRYSRHELKGCINDAKCMKYLLINKFKFPEPSIIMLTEEEDPRGPK--FP 126
++ AV+VG +Y + +EL+GCIND MK L+ +F F +I +LT ++DP+ P
Sbjct: 154 KRLAVLVGCNYPNTPNELRGCINDVLAMKDTLVKRFGFDHANIQLLT-DDDPKNSSSTMP 330
Query: 127 SKHNIRMAMYWLAQGCQPGDSLVFHYSGHGSQQRNYSGDEADGYDETICPFDFETQGMIV 186
+ NI+ A+ + + GD L FHYSGHG++ + ++E I P DF ++
Sbjct: 331 TGANIKQALSSMVDKAEAGDVLYFHYSGHGTRIPSKIHGHPFRHEEAIVPCDFN----LI 498
Query: 187 DDEINAALVRPLTHGVRLHALIDACHSGTVLD 218
D LV + G L L D+CHSG ++D
Sbjct: 499 TDLDFRQLVNRIPKGASLTILSDSCHSGGLID 594
>TC86044 similar to GP|4235430|gb|AAD13216.1| latex-abundant protein {Hevea
brasiliensis}, partial (92%)
Length = 1551
Score = 90.5 bits (223), Expect = 9e-19
Identities = 53/150 (35%), Positives = 84/150 (55%), Gaps = 1/150 (0%)
Frame = +1
Query: 70 KKAVIVGISYRYSRHELKGCINDAKCMKYLLINKFKFPEPSIIMLTEEEDPRGPKFPSKH 129
+KAV++GI+Y ++ EL+GC+ND M LI ++ F E I +L + + P+
Sbjct: 76 RKAVLIGINYPGTKAELRGCVNDVWRMHKCLIERYGFSEDDITILIDTDSSYTE--PTGK 249
Query: 130 NIRMAMYWLAQGCQPGDSLVFHYSGHGSQQRNYSGDEAD-GYDETICPFDFETQGMIVDD 188
NIR + L + + GD L HYSGHG++ +G++ D G+DE I P D +I DD
Sbjct: 250 NIRRVLSELVRSSEDGDVLFVHYSGHGTRLPAETGEDDDTGFDECIVPSD---MNLITDD 420
Query: 189 EINAALVRPLTHGVRLHALIDACHSGTVLD 218
+ V + G RL + D+CHSG +++
Sbjct: 421 DFK-EFVDGVPRGCRLTIVSDSCHSGGLIE 507
>TC92303 similar to GP|21592565|gb|AAM64514.1 latex-abundant protein
putative {Arabidopsis thaliana}, partial (4%)
Length = 687
Score = 78.2 bits (191), Expect = 5e-15
Identities = 43/115 (37%), Positives = 62/115 (53%)
Frame = +3
Query: 245 GSSGGEVICFSGCDDHQTSADTSALSKITSTGAMTFCFIQAIERGHGATYGSILNAMRTA 304
G+ GG +C S CDD ++ADTSA S + S GA+T+ FIQA++ TYG +LNAMR+
Sbjct: 3 GTRGGLAVCISACDDDGSAADTSAFSGMESAGALTYSFIQAMQVERRLTYGQLLNAMRST 182
Query: 305 IKNVGGSGGGGGDVVTSLLSMLLTGGSGLSVGGLRQEPQLTACEMFDVYSKPFSL 359
I+ G ++ + EPQL+ E FD+YSKP ++
Sbjct: 183 IRGAREEYGPNNQ------QYVMDNRQQYA-----HEPQLSCSEKFDIYSKPIAM 314
>BQ123787 similar to GP|9955575|emb latex-abundant protein-like {Arabidopsis
thaliana}, partial (41%)
Length = 704
Score = 75.5 bits (184), Expect = 3e-14
Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Frame = +2
Query: 69 RKKAVIVGISYRYSRHELKGCINDAKCMKYLLINKFKFPEPSIIMLTEEEDPRGPK--FP 126
++ AV+VG +Y + +EL+GCIND MK L+ +F F +I +LT ++DP+ P
Sbjct: 35 KRLAVLVGCNYPNTPNELRGCINDVLAMKDTLVKRFGFDHANIQLLT-DDDPKNSSSTMP 211
Query: 127 SKHNIRMAMYWLAQGCQPGDSLVFHYSGHGSQQRNYSGDEADGYDETICPFDF 179
+ NI+ A+ + + GD L FHYSGHG++ + ++E I P DF
Sbjct: 212 TGANIKQALSSMVDKAEAGDVLYFHYSGHGTRIPSKIHGHPFRHEEAIVPCDF 370
>BQ139029 weakly similar to GP|21592565|gb| latex-abundant protein putative
{Arabidopsis thaliana}, partial (5%)
Length = 673
Score = 50.8 bits (120), Expect = 8e-07
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = +2
Query: 68 GRKKAVIVGISYRYSRHELKGCINDAKCMKYLLINKFKFPEPSIIMLT 115
G K+AV+ G++YR R+ LKG +ND MK LL N F FP SI +LT
Sbjct: 308 GNKRAVLCGVTYRRRRYMLKGTVNDVVNMKKLLTNNFAFPIESIRVLT 451
>BG448416 similar to GP|13509833|em unnamed protein product {Zea mays},
partial (61%)
Length = 658
Score = 48.1 bits (113), Expect = 5e-06
Identities = 20/49 (40%), Positives = 26/49 (52%)
Frame = +1
Query: 7 VNCSNCRTPLQLPPGAGSIRCALCQAVTPVPDPRALPPQPYAVPGPSPS 55
+ C NCRT L P GA S++CA+C +T V PP P P + S
Sbjct: 205 IRCGNCRTTLMYPHGAPSVKCAVCHYITNVDMTNGRPPTPVRTPNETTS 351
Score = 33.5 bits (75), Expect = 0.13
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 9 CSNCRTPLQLPPGAGSIRCALCQAVTPVPD 38
C CRT L GA ++RC+ C + VPD
Sbjct: 97 CGGCRTLLMHARGATTVRCSCCNTINLVPD 186
Score = 27.3 bits (59), Expect = 9.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 19 PPGAGSIRCALCQAVTPVPDPRALPP 44
P GA ++ CA+C +TPV LPP
Sbjct: 1 PRGASNVCCAVCSTITPVIP--VLPP 72
>TC88458 homologue to GP|16323143|gb|AAL15306.1 At1g32540/T9G5_1
{Arabidopsis thaliana}, partial (83%)
Length = 1084
Score = 41.6 bits (96), Expect = 5e-04
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = +1
Query: 9 CSNCRTPLQLPPGAGSIRCALCQAVTPVPDP 39
CS CR L P GA S+ CA+C AVT VP P
Sbjct: 469 CSGCRNLLMYPVGATSVCCAVCNAVTAVPPP 561
Score = 37.0 bits (84), Expect = 0.012
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +1
Query: 7 VNCSNCRTPLQLPPGAGSIRCALCQAVTPV 36
VNC NCR L GA S++CA+C VT V
Sbjct: 694 VNCGNCRMLLMYQYGARSVKCAVCNFVTSV 783
>TC88911 weakly similar to GP|13926280|gb|AAK49610.1 AT5g14920/F2G14_40
{Arabidopsis thaliana}, partial (11%)
Length = 1320
Score = 41.2 bits (95), Expect = 6e-04
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Frame = +3
Query: 34 TPVPDPRALPPQPY---------AVPGPSPSFHAPPGPPPSFHGRKKAVIVGISYRYSRH 84
+PVP P LPP P + P PSP AP PPP H R+K +++S+H
Sbjct: 726 SPVPSPAILPPSPAPTPAIDTPSSAPAPSPEDDAPEPPPPHKHKRRK-------HKHSKH 884
Query: 85 E 85
+
Sbjct: 885 K 887
Score = 30.4 bits (67), Expect = 1.1
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Frame = +2
Query: 15 PLQLPPGAGSIRCALCQAVTPVPDPRALPPQPYAVPG---------PSPSFHAPPGPP 63
P PP ++ +PVPDP L P VP PSP PP PP
Sbjct: 323 PKSKPPTTAPVK-------SPVPDPPKLAPVKLPVPKVTPALSPKTPSPKIQPPPHPP 475
>TC77456 similar to PIR|T10580|T10580 zinc-finger protein Lsd1 - Arabidopsis
thaliana, partial (90%)
Length = 1472
Score = 40.8 bits (94), Expect = 8e-04
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = +2
Query: 7 VNCSNCRTPLQLPPGAGSIRCALCQAVTPVPDPRALPPQPYAVPGPSPSFHAPPGPPPS 65
V C NCRT L P GA S++CA+C +T + P +PG P G PS
Sbjct: 542 VPCGNCRTTLMYPYGAPSVKCAVCHYITNINMSNGRLP----IPGHRPHGTTDSGMLPS 706
Score = 38.5 bits (88), Expect = 0.004
Identities = 15/31 (48%), Positives = 19/31 (60%)
Frame = +2
Query: 9 CSNCRTPLQLPPGAGSIRCALCQAVTPVPDP 39
C+ CR L P GA ++ CALC +T VP P
Sbjct: 317 CNGCRNTLLYPRGATNVCCALCNTITAVPPP 409
Score = 32.0 bits (71), Expect = 0.38
Identities = 13/29 (44%), Positives = 15/29 (50%)
Frame = +2
Query: 9 CSNCRTPLQLPPGAGSIRCALCQAVTPVP 37
C CRT L GA S+RC+ C V P
Sbjct: 434 CGGCRTLLMYTRGATSVRCSCCHTVNLAP 520
>BQ141541 similar to GP|334068|gb|A ORF2 {Pseudorabies virus}, partial (2%)
Length = 1320
Score = 38.1 bits (87), Expect = 0.005
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Frame = -2
Query: 19 PPGAGSIRCALCQAVTPVPDPRALPPQPYAVPGPSPSFHA-----PPG---PPPSFHGRK 70
PP S +P+P P P P GP PSF + PP PPPSF R+
Sbjct: 662 PPTPPSFSSRAPSPTSPLPPP----PPPLQTAGPPPSFFSLWIPFPPSPLCPPPSFSSRR 495
Query: 71 KAVIVGISYRYSRHELKGCIN 91
++ + R+ L G I+
Sbjct: 494 SSIFCLVFVRFRSRLLVGAIS 432
>TC88065 similar to SP|Q9LT02|ATX1_ARATH Potential cation-transporting ATPase
(EC 3.6.3.-). [Mouse-ear cress] {Arabidopsis thaliana},
partial (34%)
Length = 1804
Score = 37.4 bits (85), Expect = 0.009
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 21 GAGSIRCALCQAVTPVPDPRA-LPPQPYAVPGPSPSFHAPPGPPPSFHGR 69
G+ +RC+L + P + PP P+ +P F PP PPPS GR
Sbjct: 1788 GSRLLRCSLLSCLAPSGALHSHWPPPPHTMPAAQGQFLRPPSPPPSRQGR 1639
>BQ144502 weakly similar to GP|6523547|emb hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (39%)
Length = 1358
Score = 36.6 bits (83), Expect = 0.015
Identities = 21/51 (41%), Positives = 22/51 (42%)
Frame = -1
Query: 14 TPLQLPPGAGSIRCALCQAVTPVPDPRALPPQPYAVPGPSPSFHAPPGPPP 64
TPL PP A I A P P R L P P P+P APP P P
Sbjct: 248 TPLSKPPAAEGIP----PATAPPPRARRLRPPSAPAPPPTPPAAAPPAPTP 108
Score = 32.3 bits (72), Expect = 0.29
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = -1
Query: 19 PPGAGSIRCALCQAVTPVPDPRALPPQPYAVPGPSPSFHAPPGPP 63
PP A +R A P P P A PP P P+ + H PP PP
Sbjct: 194 PPRARRLRPPSAPAPPPTP-PAAAPPAPTPPHAPA*APHLPPPPP 63
Score = 31.6 bits (70), Expect = 0.49
Identities = 26/66 (39%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Frame = -1
Query: 13 RTPLQLPPGAGSIRCALCQAVTPVPDPRALPPQPYAVPGPSP------SFHAPPGPPPSF 66
R PL G G R AL V PR P P P PSP S APP PPP
Sbjct: 647 RVPLAKKIG-GQPRPALVPLVRVATYPRPPRPPPPVPPPPSPPRAPPQSEAAPPPPPPPR 471
Query: 67 HGRKKA 72
R +A
Sbjct: 470 GARPRA 453
Score = 30.4 bits (67), Expect = 1.1
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -2
Query: 35 PVPDPRALPPQPYAVPGPSPSFHAPPGPPPSFH 67
P P P A P P P P PP PPP H
Sbjct: 196 PPPGPAASAPPRPPPPPPPPPQRPPPPPPPHTH 98
Score = 30.0 bits (66), Expect = 1.4
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Frame = -1
Query: 15 PLQLPPGAGSIRCALCQAVTPVPDPRA--------LPPQPYAVPGPSPSFHAP----PGP 62
P P AG R A Q V VP PR+ P+P +P P P P PGP
Sbjct: 443 PPSAPDPAGHPR-APRQGVAVVPGPRSGNSPRAAHRGPEPRPLPRPPPPTRPPAAPGPGP 267
Query: 63 PPS 65
PP+
Sbjct: 266 PPA 258
Score = 28.5 bits (62), Expect = 4.2
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Frame = -1
Query: 37 PDPRAL-----PPQPYAVPGPSPSFHAPPGPPPS 65
P+PR L P +P A PGP P PP P P+
Sbjct: 335 PEPRPLPRPPPPTRPPAAPGPGP----PPAPGPT 246
Score = 28.1 bits (61), Expect = 5.5
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Frame = -3
Query: 17 QLPPGAGSI-RCALCQAVTPV------PDPRALPPQPYAVPGPSPSFHAPPGPPP 64
Q+PP SI R +AV P P R L P +P H PP PPP
Sbjct: 840 QIPPLRRSIVRARAARAVRPPRTAQRHPPRRTLRASAAQHPSRAPRRHPPPPPPP 676
Score = 28.1 bits (61), Expect = 5.5
Identities = 17/57 (29%), Positives = 24/57 (41%)
Frame = -3
Query: 9 CSNCRTPLQLPPGAGSIRCALCQAVTPVPDPRALPPQPYAVPGPSPSFHAPPGPPPS 65
C P PP G P PR+ PP+P+ P+ + +PP PPP+
Sbjct: 228 CGRGHPPRHRPPPPGPPPPPPLGPRPPPHPPRSGPPRPHP---PTRTSLSPPPPPPA 67
Score = 27.7 bits (60), Expect = 7.1
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = -3
Query: 15 PLQLPPGAGSIRCALCQAVTPVPDPRALPPQPYAVPGPSPSFHAPPGPPPSFHGRKK 71
P +PP + S +A P P PR P +P P P PP PPS GR++
Sbjct: 540 PAPVPPQSPSTIRG--RAPPPAPPPRRPPARPPPAP-QRPRPRRPPARPPS--GRRR 385
Score = 27.7 bits (60), Expect = 7.1
Identities = 19/60 (31%), Positives = 26/60 (42%), Gaps = 1/60 (1%)
Frame = -2
Query: 7 VNCSNCRTPLQLPPGAGSIRCALCQAVTPVPDPRALP-PQPYAVPGPSPSFHAPPGPPPS 65
++ + TP L P S R P P+P P P+P P P+ APP PP+
Sbjct: 595 LSSESLHTPAHLAPPRQSPR------PRPPPEPLHNPRPRPPPRPPPAAPARAPPSGPPA 434
>TC86766 weakly similar to PIR|T06291|T06291 extensin homolog T9E8.80 -
Arabidopsis thaliana, partial (18%)
Length = 1260
Score = 36.2 bits (82), Expect = 0.020
Identities = 23/69 (33%), Positives = 29/69 (41%), Gaps = 2/69 (2%)
Frame = +2
Query: 13 RTPLQLPPGAGSIRCALCQAVTPVPDPRALPPQP--YAVPGPSPSFHAPPGPPPSFHGRK 70
+TP PP + +P P PP YA P P P ++ P PPP + G
Sbjct: 362 QTPYHPPPSPSPPPSPVYAYPSPPPPVYTSPPPSPVYAYPSPPPPVYSSPPPPPVYEGPI 541
Query: 71 KAVIVGISY 79
V GISY
Sbjct: 542 PPVF-GISY 565
Score = 32.3 bits (72), Expect = 0.29
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Frame = +2
Query: 30 CQAVTPVPDPRALPPQP-----YAVPGPSPSFHAPPGPPPS 65
C P P P + PP P ++ P P P +++ P PPP+
Sbjct: 17 CVRSPPPPPPNSPPPPPPPAPVFSPPPPVPYYYSSPPPPPA 139
Score = 31.6 bits (70), Expect = 0.49
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 32 AVTPVPDPRALPPQPYAVPGPSPSFHAPPGPPP 64
A +P P P + PP P++ P + +PP PPP
Sbjct: 137 AHSPPPPPXSPPPPPHSPTPPVYPYLSPPPPPP 235
Score = 30.0 bits (66), Expect = 1.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 30 CQAVTPVPDPRALPPQPYAVPGPSPS-FHAPPGPPP 64
C P P P + P P + P P + +H PP P P
Sbjct: 290 CVEPPPPPPPPCVEPPPPSSPAPHQTPYHPPPSPSP 397
Score = 30.0 bits (66), Expect = 1.4
Identities = 18/52 (34%), Positives = 23/52 (43%), Gaps = 2/52 (3%)
Frame = +2
Query: 15 PLQLPPGAGSIRCALCQAVTPVPDP--RALPPQPYAVPGPSPSFHAPPGPPP 64
P PP S + ++P P P + PP Y+ P PSP P PPP
Sbjct: 158 PXSPPPPPHSPTPPVYPYLSPPPPPPVHSPPPPVYSPPPPSPPPCVEPPPPP 313
Score = 30.0 bits (66), Expect = 1.4
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Frame = +2
Query: 34 TPVPDPRALPP--QPYAVPGPSPSFHAPP-----GPPPS 65
+P P P + P PY P P P H+PP PPPS
Sbjct: 164 SPPPPPHSPTPPVYPYLSPPPPPPVHSPPPPVYSPPPPS 280
Score = 29.6 bits (65), Expect = 1.9
Identities = 16/35 (45%), Positives = 19/35 (53%), Gaps = 4/35 (11%)
Frame = +2
Query: 35 PVPDPRALPPQP----YAVPGPSPSFHAPPGPPPS 65
P P P PP P Y+ P P P+ H+PP PP S
Sbjct: 65 PPPAPVFSPPPPVPYYYSSPPPPPA-HSPPPPPXS 166
Score = 28.9 bits (63), Expect = 3.2
Identities = 15/41 (36%), Positives = 16/41 (38%), Gaps = 7/41 (17%)
Frame = +2
Query: 34 TPVPDPRALPPQPYAVPGPSPSFHAP-------PGPPPSFH 67
+P P P PP P P P P P P PPP H
Sbjct: 119 SPPPPPAHSPPPPPXSPPPPPHSPTPPVYPYLSPPPPPPVH 241
Score = 28.5 bits (62), Expect = 4.2
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 34 TPVPDPRALPPQPYAVPGPSPSFHAPPGPPPSF 66
+P P P P P PSP + P PPP +
Sbjct: 347 SPAPHQTPYHPPPSPSPPPSPVYAYPSPPPPVY 445
Score = 27.3 bits (59), Expect = 9.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 34 TPVPDPRALPPQPYAVPGPSPSFHAPPGPPPSFH 67
+P P P PP P P P+P F +PP P P ++
Sbjct: 26 SPPPPPPNSPPPP---PPPAPVF-SPPPPVPYYY 115
>BQ144407 weakly similar to GP|6523547|emb| hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (23%)
Length = 1217
Score = 36.2 bits (82), Expect = 0.020
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = -1
Query: 10 SNCRTPLQLPPGAGSIRCALCQAVTPVPDPRALPPQPYAVPGPSPSFHAPPGPPP 64
S+ R P PP + RC+ +A P+ P LPP P P P P PP P P
Sbjct: 305 SSIRIP---PPRSSPYRCSRSKA--PISPPFLLPPPPPRPPPPPPGRPRPPHPSP 156
Score = 33.1 bits (74), Expect = 0.17
Identities = 23/56 (41%), Positives = 28/56 (49%), Gaps = 7/56 (12%)
Frame = -2
Query: 15 PLQLPPGAGSIRCALCQAVTPVPDPRALPPQ---PYAVPGPSPS----FHAPPGPP 63
P + PP + C L A P+P P A PP+ P A PGP P F +PP PP
Sbjct: 355 PFRCPPAS----CPL-SAPPPLP-PSAFPPRGHPPIAAPGPRPRSPPRFFSPPHPP 206
Score = 29.3 bits (64), Expect = 2.5
Identities = 21/53 (39%), Positives = 23/53 (42%), Gaps = 5/53 (9%)
Frame = -2
Query: 15 PLQLPPGAGSIRCALCQAVTPVPDPRA-----LPPQPYAVPGPSPSFHAPPGP 62
P LPP A R P P PR+ PP P A P P P+ APP P
Sbjct: 316 PPPLPPSAFPPR-GHPPIAAPGPRPRSPPRFFSPPHPPAPPRPPPAGRAPPIP 161
Score = 28.5 bits (62), Expect = 4.2
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Frame = -2
Query: 14 TPLQLPPGAGSIRCALC-------QAVTPVPDPRA--LPPQPYAVPGPSPSFHAPPGPPP 64
+P Q PP R + + TP P P A L P P+ P S APP PP
Sbjct: 478 SPFQHPPPHLQFRLPILFTR*TALSSPTPPPRPAAHSLLPPPFRCPPASCPLSAPPPLPP 299
Query: 65 S 65
S
Sbjct: 298 S 296
>TC81043 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproline-rich
glycoprotein DZ-HRGP {Volvox carteri f. nagariensis},
partial (19%)
Length = 555
Score = 35.8 bits (81), Expect = 0.026
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = +1
Query: 19 PPGAGSIRCALCQAVTPVPDPRALPPQPYAVPGPSPSFHAPPGPPP 64
PP GS A A P+P PP P + P P P+ APP P P
Sbjct: 256 PPSPGSPP-APAPAPPPIPPSPPAPPSPGSPPSPPPASPAPPKPTP 390
Score = 34.7 bits (78), Expect = 0.058
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Frame = +1
Query: 1 MYSNMLVNCSNCRTPLQLPPGAGS-----IRCALCQAVTPVPDPRALPPQPYAVPGPSPS 55
++SN LV + P PP GS + P P P +PP P A P P
Sbjct: 166 LHSN*LVTQG*PKPPPPAPPSPGSPPKPPAPPSPGSPPAPAPAPPPIPPSPPAPPSPG-- 339
Query: 56 FHAPPGPPPS 65
+PP PPP+
Sbjct: 340 --SPPSPPPA 363
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.138 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,638,761
Number of Sequences: 36976
Number of extensions: 253333
Number of successful extensions: 5233
Number of sequences better than 10.0: 257
Number of HSP's better than 10.0 without gapping: 2481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4204
length of query: 359
length of database: 9,014,727
effective HSP length: 97
effective length of query: 262
effective length of database: 5,428,055
effective search space: 1422150410
effective search space used: 1422150410
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0316.10