BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0314.12
(180 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ548187 weakly similar to GP|15290146|dbj hypothetical protein ... 81 3e-16
TC85854 similar to PIR|T50778|T50778 copper chaperone homolog CC... 69 1e-12
TC86299 similar to PIR|T50778|T50778 copper chaperone homolog CC... 64 3e-11
TC81195 similar to GP|15810597|gb|AAL07186.1 unknown protein {Ar... 60 5e-10
TC82722 similar to GP|15010768|gb|AAK74043.1 AT3g06130/F28L1_7 {... 59 8e-10
TC86391 similar to GP|4097571|gb|AAD09514.1| GMFP5 {Glycine max}... 59 1e-09
CB893867 similar to GP|20197942|gb putative farnesylated protein... 58 2e-09
TC82806 similar to GP|4097573|gb|AAD09515.1| GMFP7 {Glycine max}... 54 3e-08
CA990769 weakly similar to GP|21594005|gb| unknown {Arabidopsis ... 54 3e-08
BQ139727 weakly similar to GP|21717170|gb hypothetical protein {... 54 3e-08
TC88633 similar to PIR|T01827|T01827 hypothetical protein T15F16... 54 4e-08
TC81688 weakly similar to PIR|T51471|T51471 farnesylated protein... 52 1e-07
TC88253 weakly similar to GP|15810597|gb|AAL07186.1 unknown prot... 52 1e-07
TC87500 similar to PIR|T05686|T05686 farnesylated protein ATFP6 ... 52 1e-07
BE323522 similar to PIR|T05007|T05 hypothetical protein T19P19.9... 51 2e-07
TC84413 similar to PIR|T51471|T51471 farnesylated protein ATFP6-... 51 2e-07
TC92973 weakly similar to GP|12328526|dbj|BAB21184. hypothetical... 50 4e-07
TC80117 weakly similar to PIR|T48360|T48360 farnesylated protein... 49 1e-06
TC91993 weakly similar to GP|13899063|gb|AAK48953.1 Unknown prot... 47 4e-06
TC87501 similar to GP|4097573|gb|AAD09515.1| GMFP7 {Glycine max}... 47 4e-06
>AJ548187 weakly similar to GP|15290146|dbj hypothetical protein {Oryza
sativa (japonica cultivar-group)}, partial (32%)
Length = 439
Score = 80.9 bits (198), Expect = 3e-16
Identities = 32/61 (52%), Positives = 51/61 (83%)
Frame = -1
Query: 119 MRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKVKRAEFW 178
+RV++HC+ C GKV++H+SKMEGV SF I++E+K+VT++G ++P+ VL S+ KVK A+ W
Sbjct: 439 LRVSLHCKACEGKVRKHISKMEGVRSFTIEMETKKVTIIGDVTPLDVLASVPKVKSAQLW 260
Query: 179 N 179
+
Sbjct: 259 S 257
>TC85854 similar to PIR|T50778|T50778 copper chaperone homolog CCH
[imported] - soybean, partial (81%)
Length = 853
Score = 68.9 bits (167), Expect = 1e-12
Identities = 31/65 (47%), Positives = 47/65 (71%), Gaps = 1/65 (1%)
Frame = +1
Query: 115 QVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKV-K 173
+ VV++V + C GC+G V R L KMEGV SF+ID++ ++VTV G++ P V +++SK K
Sbjct: 91 ETVVLKVKMSCSGCSGAVNRVLEKMEGVESFDIDMKEQKVTVKGNVKPQDVFDTVSKTGK 270
Query: 174 RAEFW 178
+ EFW
Sbjct: 271 KTEFW 285
>TC86299 similar to PIR|T50778|T50778 copper chaperone homolog CCH
[imported] - soybean, partial (56%)
Length = 667
Score = 63.9 bits (154), Expect = 3e-11
Identities = 28/65 (43%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Frame = +3
Query: 115 QVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKV-K 173
Q V ++V + C+GC G VKR L K++GV S++ID++ ++V V G++ P VL+++SK K
Sbjct: 174 QTVTLKVGMSCEGCVGAVKRVLGKLDGVESYDIDLKEQKVVVKGNVEPDTVLKTVSKTGK 353
Query: 174 RAEFW 178
FW
Sbjct: 354 PTAFW 368
>TC81195 similar to GP|15810597|gb|AAL07186.1 unknown protein {Arabidopsis
thaliana}, partial (50%)
Length = 788
Score = 60.1 bits (144), Expect = 5e-10
Identities = 29/107 (27%), Positives = 60/107 (55%)
Frame = +3
Query: 65 KLVQSRSRSTSSDRESVSRVPKIKQRNLDQVEEENEPPKELQKTPTDNVFQVVVMRVAIH 124
K+++ R + E +S +PK Q++E+ +P E +K + +V+++V +H
Sbjct: 426 KVLERVQRKSHRQVELLSPIPKPPSEEEKQIDEKEKPKPEEEKKVEEPKVIIVILKVHMH 605
Query: 125 CQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISK 171
C+ C+ ++KR + K++GV S D+++ VTV G + ++E + K
Sbjct: 606 CEACSQEIKRRIEKIKGVESAEPDLKNSLVTVKGVLETDKLVEYVYK 746
Score = 52.4 bits (124), Expect = 1e-07
Identities = 31/106 (29%), Positives = 53/106 (49%), Gaps = 11/106 (10%)
Frame = +3
Query: 77 DRESVSRVPKIKQRNLDQVEEENEPPKELQKTPTDN----------VFQVVVMRVAIHCQ 126
+ E K++++ +Q ++ E KE +K PT+ + +V++V +HC+
Sbjct: 132 EEEKKPEETKVEEKKPEQPLKKEEEKKETEKPPTEEEKKPEESKEVTPREIVLKVFMHCE 311
Query: 127 GCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGH-ISPVVVLESISK 171
GCA KV+R L GV D +S +V V G P+ VLE + +
Sbjct: 312 GCARKVRRSLKGFPGVEDVVTDCKSHKVIVKGEKADPLKVLERVQR 449
>TC82722 similar to GP|15010768|gb|AAK74043.1 AT3g06130/F28L1_7 {Arabidopsis
thaliana}, partial (17%)
Length = 683
Score = 59.3 bits (142), Expect = 8e-10
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Frame = +1
Query: 115 QVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKV-K 173
Q V++V IHC GC KVK+ L K++GV + ID E +VTV G++ P V+++ ++K K
Sbjct: 307 QKSVLKVNIHCDGCKHKVKKILQKIDGVFTTEIDAEQGKVTVSGNVDPNVLIKKLAKSGK 486
Query: 174 RAEFWN 179
A+ W+
Sbjct: 487 HAQLWS 504
>TC86391 similar to GP|4097571|gb|AAD09514.1| GMFP5 {Glycine max}, partial
(54%)
Length = 1353
Score = 58.9 bits (141), Expect = 1e-09
Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Frame = +2
Query: 55 RLINYANKYSKLVQSRSRSTSSDRESVSRVPKIKQRNLDQVEEEN-EPPKELQKTPTDNV 113
+L A K +L+ + + + + P K+ +VEE+ E K +K P ++
Sbjct: 278 KLAEKAKKKVELLTPPPKKDAGAEKPAEKKPDEKKPEEKKVEEKKPEEKKPEEKKPKEST 457
Query: 114 FQVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESI-SKV 172
VVM++ +HC GC K+KR + K +GV + N+D + VTV G + P ++E + K+
Sbjct: 458 ---VVMKIRLHCDGCITKIKRIIMKFKGVETVNLDGDKDLVTVKGTMEPKDLIEYLKEKL 628
Query: 173 KR 174
KR
Sbjct: 629 KR 634
Score = 43.5 bits (101), Expect = 5e-05
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +2
Query: 94 QVEEENEPPKELQKTPTDNVFQVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKR 153
++E E + + +K + V VV ++ +HC+GC K+KR GV + D+ S +
Sbjct: 62 KIETEKKADEGAKKEDSPPV--PVVYKLDLHCEGCIKKIKRSARHFAGVETVKADLPSNK 235
Query: 154 VTVMGHISPVVVLESISK 171
VTV G V + E +++
Sbjct: 236 VTVTGKFDAVKLQEKLAE 289
>CB893867 similar to GP|20197942|gb putative farnesylated protein
{Arabidopsis thaliana}, partial (27%)
Length = 565
Score = 57.8 bits (138), Expect = 2e-09
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Frame = +2
Query: 60 ANKYSKLVQSRSRSTSSDRESVSRVPKIKQRNLDQVEEEN-EPPKELQKTPTDNVFQVVV 118
A K +L+ + + + + P K+ +VEE+ E K +K P ++ VV
Sbjct: 158 AKKKVELLTPPPKKDAGAEKPAEKKPDEKKPEEKKVEEKKPEEKKPEEKKPKEST---VV 328
Query: 119 MRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESI-SKVKR 174
M++ +HC GC K+KR + K +GV + N+D + VTV G + P ++E + K+KR
Sbjct: 329 MKIRLHCDGCITKIKRIIMKFKGVETVNLDGDKDLVTVKGTMEPKDLIEYLKEKLKR 499
Score = 44.3 bits (103), Expect = 3e-05
Identities = 20/56 (35%), Positives = 31/56 (54%)
Frame = +2
Query: 118 VMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKVK 173
V ++ +HC+GC K+KR GV + D+ S +VTV G V + E ++K K
Sbjct: 2 VYKLDLHCEGCIKKIKRSARHFAGVETVKADLPSNKVTVTGKFDAVKLQEKLAKKK 169
>TC82806 similar to GP|4097573|gb|AAD09515.1| GMFP7 {Glycine max}, partial
(96%)
Length = 748
Score = 54.3 bits (129), Expect = 3e-08
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +3
Query: 114 FQVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISP--VVVLESISK 171
FQ V ++V + C+GC KVK+ + M+GVT +D ++ +VTV G++ P VV S
Sbjct: 93 FQTVEVKVKMDCEGCERKVKKSVEGMKGVTQVEVDRKASKVTVTGYVEPSKVVARMSHRT 272
Query: 172 VKRAEFW 178
KR E W
Sbjct: 273 GKRVELW 293
>CA990769 weakly similar to GP|21594005|gb| unknown {Arabidopsis thaliana},
partial (20%)
Length = 488
Score = 54.3 bits (129), Expect = 3e-08
Identities = 36/140 (25%), Positives = 65/140 (45%)
Frame = +1
Query: 26 VCMSTRDPRSIVVVPKRHDRTIFVDDDHTRLINYANKYSKLVQSRSRSTSSDRESVSRVP 85
VC+S I+ PK + +D +T++ A + V+ + ++ +
Sbjct: 109 VCLSI-----IIYFPKSE---LLLDTSYTKMGEEAKQEQPKVEEKQEEKKEEKAEGGKEE 264
Query: 86 KIKQRNLDQVEEENEPPKELQKTPTDNVFQVVVMRVAIHCQGCAGKVKRHLSKMEGVTSF 145
+ K+ + ++ EE + KE K P + V+ V +HC GCA K++R + KM GV
Sbjct: 265 EKKEESKEEKPEEEK--KEEPKPP-----EPCVLFVDLHCVGCAKKIQRSIMKMRGVEGV 423
Query: 146 NIDVESKRVTVMGHISPVVV 165
ID+ VT+ G + P +
Sbjct: 424 VIDMAKNEVTIKGIVEPQAI 483
>BQ139727 weakly similar to GP|21717170|gb hypothetical protein {Oryza sativa
(japonica cultivar-group)}, partial (64%)
Length = 658
Score = 53.9 bits (128), Expect = 3e-08
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +2
Query: 115 QVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKV-K 173
Q V ++V + C GC VK + K++G+ S +D+E +RVTV G++ VL+++ + K
Sbjct: 242 QTVELKVRMCCTGCERVVKNAIYKLKGIDSVKVDLEMERVTVTGYVERNKVLKAVRRSGK 421
Query: 174 RAEFW 178
RAEFW
Sbjct: 422 RAEFW 436
>TC88633 similar to PIR|T01827|T01827 hypothetical protein T15F16.6 -
Arabidopsis thaliana, partial (78%)
Length = 730
Score = 53.5 bits (127), Expect = 4e-08
Identities = 29/91 (31%), Positives = 52/91 (56%), Gaps = 1/91 (1%)
Frame = +2
Query: 89 QRNLDQVEEENEPPKELQKTPTDNVFQVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNID 148
Q L+ + + K+ +K T Q V +++ + C+GCA KVK LS ++G ++D
Sbjct: 80 QGTLEYLSDLLSSTKKKKKKQT----QTVSLKIRMDCEGCARKVKHVLSGVKGAKKVDVD 247
Query: 149 VESKRVTVMGHISPVVVLESI-SKVKRAEFW 178
++ ++VTV G++ P VL++ S K+ E W
Sbjct: 248 LKQQKVTVSGYVEPKKVLKAAQSTKKKVELW 340
>TC81688 weakly similar to PIR|T51471|T51471 farnesylated protein ATFP6-like
protein - Arabidopsis thaliana, partial (44%)
Length = 697
Score = 52.4 bits (124), Expect = 1e-07
Identities = 25/66 (37%), Positives = 40/66 (59%), Gaps = 1/66 (1%)
Frame = +3
Query: 115 QVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESI-SKVK 173
+ V +RV + C+GC KVK + +GV S+N+ + +RVTV GHI +L+ + S K
Sbjct: 150 KTVHIRVKMDCEGCEKKVKNAVKDFDGVESYNVTKDQQRVTVTGHIDANEILDEVRSTGK 329
Query: 174 RAEFWN 179
A+ W+
Sbjct: 330 TADMWS 347
>TC88253 weakly similar to GP|15810597|gb|AAL07186.1 unknown protein
{Arabidopsis thaliana}, partial (51%)
Length = 1122
Score = 52.4 bits (124), Expect = 1e-07
Identities = 25/107 (23%), Positives = 57/107 (52%)
Frame = +3
Query: 65 KLVQSRSRSTSSDRESVSRVPKIKQRNLDQVEEENEPPKELQKTPTDNVFQVVVMRVAIH 124
K+++ + + E +S +PK ++ ++ +E P+E + P V +V+++ +H
Sbjct: 354 KVLKRLQKKSGKKVELISPLPKPQEEKKEEEIKEEPKPEEKKDEPPPVV--TIVLKIRMH 527
Query: 125 CQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISK 171
C CA +++ + K++GV S D+ + + V G I P +++ + K
Sbjct: 528 CDACAQVIQKRIRKIKGVESVETDLGNDQAIVKGVIDPTKLVDEVFK 668
Score = 46.2 bits (108), Expect = 7e-06
Identities = 26/87 (29%), Positives = 47/87 (53%), Gaps = 1/87 (1%)
Frame = +3
Query: 86 KIKQRNLDQVEEENEPPKELQKTPTDNVFQVVVMRVAIHCQGCAGKVKRHLSKMEGVTSF 145
K ++ ++ EEE + K+ ++ P + +V++V +HC+ CA KV + L EGV
Sbjct: 132 KKEETKEEKKEEEKKEEKKDEEQPPE-----IVLKVDMHCEACARKVAKALKGFEGVEEV 296
Query: 146 NIDVESKRVTVMGHIS-PVVVLESISK 171
D + +V V G + P+ VL+ + K
Sbjct: 297 TADSKGSKVVVKGKAADPIKVLKRLQK 377
>TC87500 similar to PIR|T05686|T05686 farnesylated protein ATFP6 -
Arabidopsis thaliana, partial (95%)
Length = 680
Score = 52.0 bits (123), Expect = 1e-07
Identities = 26/66 (39%), Positives = 41/66 (61%), Gaps = 2/66 (3%)
Frame = +1
Query: 115 QVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESIS--KV 172
Q V ++V + C+GC KV+R + M+GV +ID ++ +VTV G++ P V+ I+
Sbjct: 121 QTVEVKVKMDCEGCERKVRRSVEGMKGVNQVDIDRKAHKVTVQGYVEPNKVVARIAHRTG 300
Query: 173 KRAEFW 178
KRAE W
Sbjct: 301 KRAEIW 318
>BE323522 similar to PIR|T05007|T05 hypothetical protein T19P19.90 -
Arabidopsis thaliana, partial (87%)
Length = 599
Score = 51.2 bits (121), Expect = 2e-07
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +1
Query: 115 QVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESI-SKVK 173
Q V ++V + C GC KVK+ LS + GV S +I+ + ++VTV G + P VL+ S K
Sbjct: 142 QTVELKVRMDCDGCELKVKKTLSSLSGVQSVDINRKQQKVTVTGFVDPNKVLKKAKSTGK 321
Query: 174 RAEFW 178
+AE W
Sbjct: 322 KAEIW 336
>TC84413 similar to PIR|T51471|T51471 farnesylated protein ATFP6-like
protein - Arabidopsis thaliana, partial (68%)
Length = 702
Score = 51.2 bits (121), Expect = 2e-07
Identities = 25/66 (37%), Positives = 40/66 (59%), Gaps = 2/66 (3%)
Frame = +3
Query: 115 QVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKV-- 172
Q V ++V + C GC +V+ ++ M+GV S I+ + +VTV G + P +VL+ +
Sbjct: 114 QTVEIKVKMDCDGCERRVRNAVATMKGVKSVEINRKQSKVTVNGFVDPNMVLKRVRSTGK 293
Query: 173 KRAEFW 178
KRAEFW
Sbjct: 294 KRAEFW 311
>TC92973 weakly similar to GP|12328526|dbj|BAB21184. hypothetical
protein~similar to Arabidopsis thaliana chromosome 3
F28L1.7, partial (15%)
Length = 683
Score = 50.4 bits (119), Expect = 4e-07
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +2
Query: 114 FQVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKV- 172
+Q V++V IHC GC +VK+ L +EGV ID +VTV G++ +++ +S+
Sbjct: 125 YQTWVLKVLIHCDGCTKRVKKILQGIEGVYRTEIDSRQHKVTVTGNVDAETLIKKLSRSG 304
Query: 173 KRAEFW 178
K E W
Sbjct: 305 KSVELW 322
>TC80117 weakly similar to PIR|T48360|T48360 farnesylated protein-like -
Arabidopsis thaliana, partial (36%)
Length = 880
Score = 48.9 bits (115), Expect = 1e-06
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
Frame = +1
Query: 51 DDHTRLINYANKYSKLVQS-RSRSTSSDRESVSRVPKIKQRNLDQVEEENEPPKELQKTP 109
D H A K K V+ S D + + P+ K+ + ++ ++ +E K +K P
Sbjct: 262 DPHKVRDKLAEKIKKKVELVSSPQPKKDDPAAADKPQEKKNHDEEKKKPDEDKKPEEKKP 441
Query: 110 TD-----NVFQVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVV 164
+ +V VV+++ +HC GC K+++ + K++GV S D VTV G I
Sbjct: 442 EEKSSKQSVQNTVVLKIRLHCDGCIQKIEKIILKIKGVESVTSDEGKDLVTVKGTIDAKE 621
Query: 165 VLESIS-KVKR 174
++ ++ K+KR
Sbjct: 622 IVPYLAEKLKR 654
Score = 46.2 bits (108), Expect = 7e-06
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +1
Query: 117 VVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESIS-KVKR 174
VV+++ +HC+GC K+KR + +GV D + ++TV+G + P V + ++ K+K+
Sbjct: 130 VVLKLDLHCEGCVKKIKRAVRHFDGVEDVKADTPNNKLTVIGKVDPHKVRDKLAEKIKK 306
>TC91993 weakly similar to GP|13899063|gb|AAK48953.1 Unknown protein
{Arabidopsis thaliana}, partial (82%)
Length = 605
Score = 47.0 bits (110), Expect = 4e-06
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +1
Query: 115 QVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKV-K 173
Q V ++V + C GC +V+ ++ M+GV ++ + +VTV G++ VL+ I K
Sbjct: 181 QTVEIKVKMDCDGCERRVRNSVAYMKGVKQVEVNRKQSKVTVSGNVDRNRVLKKIQNTGK 360
Query: 174 RAEFW 178
RAEFW
Sbjct: 361 RAEFW 375
>TC87501 similar to GP|4097573|gb|AAD09515.1| GMFP7 {Glycine max}, partial
(47%)
Length = 622
Score = 47.0 bits (110), Expect = 4e-06
Identities = 21/56 (37%), Positives = 36/56 (63%)
Frame = +3
Query: 115 QVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESIS 170
Q V ++V + C+GC KV+R + M+GV +ID ++ +VTV G++ P V+ I+
Sbjct: 423 QTVEVKVKMDCEGCERKVRRSVEGMKGVNQVDIDRKAHKVTVQGYVEPNKVVARIA 590
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.317 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,991,233
Number of Sequences: 36976
Number of extensions: 55279
Number of successful extensions: 328
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of query: 180
length of database: 9,014,727
effective HSP length: 90
effective length of query: 90
effective length of database: 5,686,887
effective search space: 511819830
effective search space used: 511819830
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0314.12