TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0310b.7
         (1046 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG587143 weakly similar to PIR|A96586|A9 hypothetical protein F2...   186  3e-47
BE941280 weakly similar to GP|20197614|g unknown protein {Arabid...   115  9e-26
BI271341                                                               76  8e-14
TC91093 weakly similar to PIR|T01873|T01873 hypothetical protein...    54  2e-07
BM814840 weakly similar to GP|15128241|db helicase-like protein ...    49  1e-05
CA859513                                                               40  0.006
BG586303 weakly similar to PIR|A96586|A96 hypothetical protein F...    33  0.57
BM815213 similar to GP|13877765|gb unknown protein {Arabidopsis ...    30  4.8
TC87543 similar to PIR|A96745|A96745 probable cytosolic factor T...    30  6.3
TC92051 similar to GP|4378659|gb|AAD19610.1| cyclic nucleotide g...    29  8.3

>BG587143 weakly similar to PIR|A96586|A9 hypothetical protein F20D21.24
           [imported] - Arabidopsis thaliana, partial (12%)
          Length = 717

 Score =  186 bits (473), Expect = 3e-47
 Identities = 92/200 (46%), Positives = 132/200 (66%), Gaps = 11/200 (5%)
 Frame = -3

Query: 94  PDERPYIVCRVFKMKVDNLIADLKKENIFGEVDA----------GLPHAHILLWLHGESK 143
           P+++P I CRVFKMK+D L+ D KK   F               GL HAHILLW    S+
Sbjct: 694 PNDKPDIECRVFKMKLDELLKDFKKGTFFKPYTTALHRIEFQKRGLRHAHILLWFGNSSR 515

Query: 144 LTSPHDIDKKISAELPDPQLYPKLYDVVST*IMHGPCGKANPTCACMKNGKCTKYFPKKF 203
             S  ++D+ ISAELP+ +  P+ Y++V+  ++HGPCG  NP   CM+N  CTK +P+ +
Sbjct: 514 TPSSEEVDEIISAELPNKKQDPEAYNLVTKHMIHGPCGVINPKSPCMENNVCTKKYPRPY 335

Query: 204 QNSTTIDDNGYPHYRRRQSGIK-VLKNGIELDSRNVVPYNPKLLMRYHAHINVEYCNKSN 262
             ST+ID +GY  YRRR +  + V+KNG  L++  +VP+N KLL +Y AHIN+E+CN+++
Sbjct: 334 NGSTSIDKSGYVLYRRR*NETEHVVKNGAILNNTFIVPHNIKLLKKYEAHINMEWCNRTS 155

Query: 263 SIKYLFKYVNKGSDRVTAEI 282
           ++KYLFKY+ KG DRV+  I
Sbjct: 154 AVKYLFKYITKGVDRVSVVI 95


>BE941280 weakly similar to GP|20197614|g unknown protein {Arabidopsis
           thaliana}, partial (8%)
          Length = 403

 Score =  115 bits (288), Expect = 9e-26
 Identities = 56/99 (56%), Positives = 73/99 (73%)
 Frame = -1

Query: 620 DTFKIPGGRTAHSRFSIPLNINETLTCKVSKGSLKAKLLQQSSLIIWDEAPMLNIFCFEA 679
           D   +PGGRTAHSRF IP  I+ET  C V+     A L+ ++ LIIWDEAPM++  CFEA
Sbjct: 298 DALLMPGGRTAHSRFGIPFIIDETSMCGVTPNIPLASLVIKAKLIIWDEAPMMHKHCFEA 119

Query: 680 LDRTLKDIMSSENRANANKPFGGKVVVLGGDFKQILHVI 718
           LDR+L+D++ + +  N + PFGGKVVVLGGDF+QIL V+
Sbjct: 118 LDRSLRDVLKTVDERNKDIPFGGKVVVLGGDFRQILLVM 2


>BI271341 
          Length = 468

 Score = 75.9 bits (185), Expect = 8e-14
 Identities = 43/102 (42%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
 Frame = +1

Query: 711 FKQILHVIQKGSRQDIVTATVNSSYLWENCKVLSLTKNMRLLNTNGHQDND-DVKEFSE* 769
           F+ IL VI +GSR DI+ AT+NSS + ++C+V+ L KNM  L  NG   ND + ++FS+*
Sbjct: 1   FR*ILPVIPRGSRSDIIHATINSSCI*DHCQVVRLKKNM-WLQQNGQSSNDPEFEQFSK* 177

Query: 770 ILKLGNGESTPNDDGKMLIDVPHDLFITDPSEPLLQLIQFVY 811
           ILK+G+G+    +D    ID+P +L I++  + L  ++Q  Y
Sbjct: 178 ILKVGDGKIYEPNDSYADIDIPPELLISNYDDSLQTIVQSTY 303


>TC91093 weakly similar to PIR|T01873|T01873 hypothetical protein T24M8.10 -
           Arabidopsis thaliana, partial (11%)
          Length = 701

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
 Frame = +3

Query: 784 GKMLIDVPHDLFI---TDPSEPLLQLIQFVYPDMVSHLTDPTFYQERAILALTLESVEKV 840
           GKM    P+D +    T P +P+  ++Q  YP++VS   +  F Q RAIL  T E V+++
Sbjct: 336 GKM--SEPNDSYAEVDTPPGDPIDAIVQSTYPNLVSQYNNEQFLQSRAILTSTDEVVDQI 509

Query: 841 NQYILSCIEGEEKNI 855
           N Y+L  I GEE+ I
Sbjct: 510 NDYVLKLIPGEERVI 554


>BM814840 weakly similar to GP|15128241|db helicase-like protein {Oryza sativa
            (japonica cultivar-group)}, partial (6%)
          Length = 733

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 27/86 (31%), Positives = 48/86 (55%)
 Frame = +2

Query: 961  *KTTVSIGCLLRNDHQQESRAVFEPCWIIPS*TSIHSWSVLRSSIKSQK*KSVKNPNTG* 1020
            *+ +VSIG  +  DH+QE R+ F  CW + +  SI+SW  LR  I+ ++*+ +++ +  *
Sbjct: 167  *EVSVSIGSFICYDHKQEPRSNFNLCWTLFAKASIYSWPTLRCCIEGEE*EWIEDLDNR* 346

Query: 1021 *RKNYHFSNKCCLQGGL*KYLRFVLY 1046
                     +C L GG  + L+ + +
Sbjct: 347  KWFTIVVHRQCSLPGGFSENLKLIAF 424


>CA859513 
          Length = 363

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 23/63 (36%), Positives = 31/63 (48%)
 Frame = +1

Query: 129 LPHAHILLWLHGESKLTSPHDIDKKISAELPDPQLYPKLYDVVST*IMHGPCGKANPTCA 188
           LPHAH+L             + D  +SAEL DP    +LY  V + ++HGP G  N    
Sbjct: 166 LPHAHMLFH--------RADNYDTFVSAELSDPVEQLRLYQTVVSVMIHGPYGPFNNNVP 321

Query: 189 CMK 191
           CM+
Sbjct: 322 CMR 330


>BG586303 weakly similar to PIR|A96586|A96 hypothetical protein F20D21.24
           [imported] - Arabidopsis thaliana, partial (3%)
          Length = 698

 Score = 33.1 bits (74), Expect = 0.57
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -3

Query: 91  NLKPDERPYIVCRVFKMKVDNLIADLKKENIFGEVDAGL 129
           N  P++R  +  RVFKMK+D L++D  K   F    AGL
Sbjct: 678 NDDPNDRHDLKSRVFKMKLDELMSDFNKGIFFPRPKAGL 562


>BM815213 similar to GP|13877765|gb unknown protein {Arabidopsis thaliana},
           partial (22%)
          Length = 522

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 34/122 (27%), Positives = 47/122 (37%), Gaps = 4/122 (3%)
 Frame = +2

Query: 272 NKGSDRVTAEITTTAESSGNKRVVDEIKQY----YDCRYLSPCEAVWITFKFEIHESENQ 327
           N  S    AEI TT  S G   +  + KQ     Y CR  SP               E  
Sbjct: 161 NFSSSTTIAEIRTTCHSFGPSGLNSKPKQGVTIGYTCRLQSP---------------ERH 295

Query: 328 QSVLFGDHEDITDVLDKKGLYHNVFGVDLTYSEFPSKFVYNEKFIIWELRKQGYSIRRLT 387
           +S++  D  D T +L+    +    G D       S  V + K+ +WE  KQ +  R  T
Sbjct: 296 KSIVRPDMLD-TSLLNVVHHFQLKEGYDYYNMPEGSAIVNHYKYQVWESFKQKFYRRVAT 472

Query: 388 YI 389
           Y+
Sbjct: 473 YV 478


>TC87543 similar to PIR|A96745|A96745 probable cytosolic factor T9N14.8
           [imported] - Arabidopsis thaliana, partial (74%)
          Length = 1718

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
 Frame = +1

Query: 336 EDITDVLDKKGLYHNVFGVDL-----TYSEFPSKFVYN---------EKFIIWELRKQGY 381
           ED+ D LDK    H             Y EF +K +Y          E+F+ W ++    
Sbjct: 622 EDLGDDLDKVVFMHGFSREGHPVCYNVYGEFQNKELYEKTFGSEEKRERFLRWRVQFLEK 801

Query: 382 SIRRLTYIPPGTGELYYMRML 402
           SIR+L + P G   L+ +  L
Sbjct: 802 SIRKLDFSPGGVNTLFQVNDL 864


>TC92051 similar to GP|4378659|gb|AAD19610.1| cyclic nucleotide gated
           channel {Arabidopsis thaliana}, partial (25%)
          Length = 665

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 12/31 (38%), Positives = 16/31 (50%)
 Frame = +1

Query: 180 CGKANPTCACMKNGKCTKYFPKKFQNSTTID 210
           CG  N T   + NG CT   P +  N+TT +
Sbjct: 256 CGPRNATVLSLLNGACTLVDPDEINNTTTFN 348


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.333    0.145    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,579,651
Number of Sequences: 36976
Number of extensions: 566480
Number of successful extensions: 4100
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2249
Number of HSP's successfully gapped in prelim test: 178
Number of HSP's that attempted gapping in prelim test: 1800
Number of HSP's gapped (non-prelim): 2532
length of query: 1046
length of database: 9,014,727
effective HSP length: 106
effective length of query: 940
effective length of database: 5,095,271
effective search space: 4789554740
effective search space used: 4789554740
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 63 (28.9 bits)