TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0310b.12
         (1485 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2...   230  4e-60
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported...   204  2e-52
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi...   202  1e-51
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid...   192  1e-48
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2...   174  2e-43
BG644690 weakly similar to GP|18542179|gb putative pol protein {...   137  3e-41
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret...   163  5e-40
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot...   161  2e-39
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati...   127  4e-29
BG453259 homologue to GP|21434|emb|CA ORF4 {Solanum tuberosum}, ...   125  2e-28
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr...   117  3e-26
BE239977 weakly similar to GP|23237899|db polyprotein-like {Oryz...   113  6e-25
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen...   112  1e-24
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate...    67  4e-24
BG648737 weakly similar to GP|21433|emb|CA ORF3 {Solanum tuberos...   105  2e-22
BI262917 weakly similar to GP|19920130|g Putative retroelement {...   103  5e-22
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p...    99  9e-21
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu...    96  1e-19
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ...    95  2e-19
AW684891                                                               74  1e-18

>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
            [imported] - Arabidopsis thaliana, partial (10%)
          Length = 744

 Score =  230 bits (586), Expect = 4e-60
 Identities = 112/242 (46%), Positives = 169/242 (69%)
 Frame = +2

Query: 1113 KVCKLKKALYGLKQSPRAWFGRFTNAMVSLGYKQSQGDHTLFIKHTRNGKLTLLLVYVND 1172
            KVC+L+K++YGLKQ+ R W+ + + +++S GY QS  D +LF K  ++   T LLVYV+D
Sbjct: 17   KVCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKF-KDSSFTTLLVYVDD 193

Query: 1173 MIIAGNDELEKQNLRKELAVQFEMKDLGKLKYFLGMEVAYSKQGIFISQRKYVLDLLKET 1232
            +++AGND  E Q+++  L  +F++KDLG L+YFLG+EVA SKQGI ++QRKY L+LL+++
Sbjct: 194  IVLAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDS 373

Query: 1233 GKLGCKPMGVPIEQNHKIGSSEEDLRVHKAQYQRLVGKLIYLSHTRPDIAYPVSVVSQFM 1292
            G L  K    P + + K+ +S+  L   + QY+RL+GKLIYL+ TRPDI++ V  +SQF+
Sbjct: 374  GNLAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFV 553

Query: 1293 HDPQERHLQAVDRILQYLKASPGRGLLFKKSEQLSMEVYTDADYAGSIVDRRSTTGYCMF 1352
              PQ+ H QA  R+LQYLK +P +GL +  +  L +  + D+D+A     R+S TGY +F
Sbjct: 554  SKPQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVF 733

Query: 1353 LG 1354
            LG
Sbjct: 734  LG 739


>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
            Arabidopsis thaliana, partial (17%)
          Length = 618

 Score =  204 bits (520), Expect = 2e-52
 Identities = 95/193 (49%), Positives = 137/193 (70%)
 Frame = -1

Query: 962  HQSFISAIDSIRVPTSVQEVLKDKKWIQAMNEEMHALDKNGTRKIVEKPNDKRTVGCKWI 1021
            H +F+  ++   +P S +E ++DK+W +++  E  A+ KN T    E P  K+ V  +WI
Sbjct: 597  HCAFMVNLNENHIPRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWI 418

Query: 1022 YTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHFDWELQQ 1081
            +T+KY++DG+++R K RLVA+G+T TYG DY ETFAPVAK++T+RI+LSLA +  W L Q
Sbjct: 417  FTIKYKADGSIERKKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQ 238

Query: 1082 FDVKNAFLHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMVS 1141
             DVKNAFL G+LE+EVYM  PPG +    R  V +LKKA+YGLKQSPRAW+ + +  +  
Sbjct: 237  MDVKNAFLQGELEDEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNG 58

Query: 1142 LGYKQSQGDHTLF 1154
             G+++S+ DHTLF
Sbjct: 57   RGFRKSELDHTLF 19


>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
            partial (9%)
          Length = 675

 Score =  202 bits (513), Expect = 1e-51
 Identities = 95/197 (48%), Positives = 139/197 (70%)
 Frame = +1

Query: 982  LKDKKWIQAMNEEMHALDKNGTRKIVEKPNDKRTVGCKWIYTVKYRSDGTLDRYKARLVA 1041
            L D +W+QAM  E  AL  N T  +V  P  K+ +GCKW+Y VK   DG+++++KARLVA
Sbjct: 82   LSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKFKARLVA 261

Query: 1042 KGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHFDWELQQFDVKNAFLHGDLEEEVYMEI 1101
            KG++QT G DY ETF+PV K  T+R+IL++A  + WE+QQ D+ NAFL+G L+EEVYM  
Sbjct: 262  KGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQ 441

Query: 1102 PPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMVSLGYKQSQGDHTLFIKHTRNG 1161
            P G++  + ++ VCKL K+LYGLKQ+PRAW+   T+A +  G+ +S+ D +L I + +NG
Sbjct: 442  PQGFE-AANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLI-YNQNG 615

Query: 1162 KLTLLLVYVNDMIIAGN 1178
                L +YV+D++I G+
Sbjct: 616  ACIYLXIYVDDILITGS 666


>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
            thaliana}, partial (14%)
          Length = 778

 Score =  192 bits (487), Expect = 1e-48
 Identities = 95/248 (38%), Positives = 159/248 (63%), Gaps = 3/248 (1%)
 Frame = +3

Query: 975  PTSVQEVLKDKKWIQAMNEEMHALDKNGTRKIVEKPNDKRTVGCKWIYTVKYRSDGTLDR 1034
            PT+ +E +K +KW  +MN EM A ++N T ++ +  +  +T+G KWI+  K   +G +++
Sbjct: 42   PTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNENGEIEK 221

Query: 1035 YKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHFDWELQQFDVKNAFL---HG 1091
            YKARLVAKGY+Q YG+DY E FAPVA+ +T+R++++LAA    ++++  V  + +   H 
Sbjct: 222  YKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAA----QIKRDGVCIS*M*KAHS 389

Query: 1092 DLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMVSLGYKQSQGDH 1151
             +E  +   +   +     R    ++K+ALYGLKQ+PRAW+ R        G+++   +H
Sbjct: 390  CMEN*MRKFLLINHRVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKEGFEKCPYEH 569

Query: 1152 TLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEMKDLGKLKYFLGMEVA 1211
            TLF+K +  GK+ ++ +YV+D+I  GNDE   +  +K +  +F M DLGK+ YFLG+EV 
Sbjct: 570  TLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKMHYFLGVEVT 749

Query: 1212 YSKQGIFI 1219
             +++GI+I
Sbjct: 750  QNEKGIYI 773


>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
            Arabidopsis thaliana, partial (11%)
          Length = 732

 Score =  174 bits (441), Expect = 2e-43
 Identities = 87/217 (40%), Positives = 135/217 (62%)
 Frame = +1

Query: 1208 MEVAYSKQGIFISQRKYVLDLLKETGKLGCKPMGVPIEQNHKIGSSEEDLRVHKAQYQRL 1267
            +EV  +++GI+I QRKYV DLL+  G         PI    K+   E  ++V   +Y+++
Sbjct: 1    VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180

Query: 1268 VGKLIYLSHTRPDIAYPVSVVSQFMHDPQERHLQAVDRILQYLKASPGRGLLFKKSEQLS 1327
            VG L+YL+ TRPD+ Y +S++S+FM+ P E H+ AV R+L+YL  +   G+++K++    
Sbjct: 181  VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360

Query: 1328 MEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAMAQGVCEL 1387
            +E YTD+DYAG + DR+ST+GY   L    V+W SKKQ VV  S+ +AEF A A   C+ 
Sbjct: 361  LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540

Query: 1388 LRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQH 1424
            + M+ +L+ L       + ++CDN S I ++ NPV H
Sbjct: 541  VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651


>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
            partial (22%)
          Length = 629

 Score =  137 bits (346), Expect(2) = 3e-41
 Identities = 65/142 (45%), Positives = 102/142 (71%)
 Frame = -2

Query: 1032 LDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHFDWELQQFDVKNAFLHG 1091
            + R K++LV +GY Q  GIDYDE F+PVA+M  +RI+++ AA   ++L Q DVK+AF++G
Sbjct: 424  ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245

Query: 1092 DLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMVSLGYKQSQGDH 1151
            DL+EEV+++ PPG++     N V +L K LYGLKQ+PRAW+ R +  ++  G+K+ + D+
Sbjct: 244  DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65

Query: 1152 TLFIKHTRNGKLTLLLVYVNDM 1173
            TLF+   R  +L ++ VYV+D+
Sbjct: 64   TLFLL-KRE*ELLIIQVYVDDI 2



 Score = 50.8 bits (120), Expect(2) = 3e-41
 Identities = 22/66 (33%), Positives = 39/66 (58%)
 Frame = -3

Query: 960  VQHQSFISAIDSIRVPTSVQEVLKDKKWIQAMNEEMHALDKNGTRKIVEKPNDKRTVGCK 1019
            V   +FIS+I+    P +V+E L+D  WI +M EE+H  +++    +V +P  K  +G +
Sbjct: 618  VSFSAFISSIE----PKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTR 451

Query: 1020 WIYTVK 1025
            W++  K
Sbjct: 450  WVFRNK 433


>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
           {Oryza sativa} [Oryza sativa (japonica cultivar-group)],
           partial (10%)
          Length = 823

 Score =  163 bits (412), Expect = 5e-40
 Identities = 95/254 (37%), Positives = 143/254 (55%), Gaps = 4/254 (1%)
 Frame = +1

Query: 555 FSKHHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDCTRITWVFLMKD 614
           F    + +F  + ++     D +HSD+WGPS +++  G ++ +T IDD  R  WV+ ++ 
Sbjct: 40  FGNRKKVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRY 219

Query: 615 KSEVFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVDAPQQ 674
           K+E F  F  +  ++ TQ GK +K+L +DN  E  + +F+EF T +G+    T    PQQ
Sbjct: 220 KNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQ 399

Query: 675 NGVAERKNRHLLEITRALLFQMNV--PKFYWGEAVLTAAYLINRLPSRVLSNVSPVLVMT 732
           NGVAER  R LLE  R +L    +   +  W EA  TA +L+NR P   L    P  + +
Sbjct: 400 NGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWS 579

Query: 733 SFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYK--CYHPP 790
               ++   S L  R+FGC A+  V+    GKL PRA +CIF+ YAS+ KGY+  C  P 
Sbjct: 580 G---NLVDYSNL--RIFGCPAYALVND---GKLAPRAGECIFLSYASESKGYRLWCSDPK 735

Query: 791 SRRVYISMDVTFQE 804
           S+++ +S DVTF E
Sbjct: 736 SQKLILSRDVTFNE 777


>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
           [imported] - Arabidopsis thaliana, partial (13%)
          Length = 718

 Score =  161 bits (408), Expect = 2e-39
 Identities = 94/248 (37%), Positives = 136/248 (53%), Gaps = 4/248 (1%)
 Frame = -3

Query: 479 LATGQIIGIAKEQDGLYCLQHEES----KCHQTSSESWNTSQIWLRHKRLGHPPFSILRT 534
           + + Q+IG    +  LY L+  +     KC  TSS S N   +W  H RLGHP    L  
Sbjct: 710 IESSQLIGEGVTKGDLYMLEKLDPVSNYKCSFTSSSSLNKDALW--HARLGHPHGRALNL 537

Query: 535 MFPHLFSKVSVESFHCDVCQFSKHHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVSGAK 594
           M P     V  E+ +C+ C   KH ++ F  ++      FDL+++D+W   S+S     K
Sbjct: 536 MLPG----VVFENKNCEACILGKHCKNVFPRTSTVYENCFDLIYTDLWTAPSLSR-DNHK 372

Query: 595 WFVTFIDDCTRITWVFLMKDKSEVFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFS 654
           +FVTFID+ ++ TW+ L+  K  V   F NF   +   +   IK LRSDNG E  +  F 
Sbjct: 371 YFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTSYAFK 192

Query: 655 EFLTKNGVVHELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLI 714
             L  +G++H+ +C   PQQNGVA+RKN+HL+E+ R+L+FQ NV          TA YLI
Sbjct: 191 SHLDHHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMFQANVS---------TACYLI 39

Query: 715 NRLPSRVL 722
           N +P++VL
Sbjct: 38  NWIPTKVL 15


>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
            cultivar-group)}, partial (8%)
          Length = 503

 Score =  127 bits (318), Expect = 4e-29
 Identities = 67/130 (51%), Positives = 86/130 (65%)
 Frame = +1

Query: 1126 QSPRAWFGRFTNAMVSLGYKQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQN 1185
            QSPR WF RFT  +   GY Q Q DH +FIKH+   K  +L+VYV+D+ + G+     + 
Sbjct: 1    QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180

Query: 1186 LRKELAVQFEMKDLGKLKYFLGMEVAYSKQGIFISQRKYVLDLLKETGKLGCKPMGVPIE 1245
            L+  LA +FE+KDLG LKYFLGMEVA  K+G  ISQRKYVLDLLKET  +GCK +  P  
Sbjct: 181  LKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDPYG 360

Query: 1246 QNHKIGSSEE 1255
             N +  +S +
Sbjct: 361  CNCEARNSRQ 390



 Score = 64.7 bits (156), Expect = 3e-10
 Identities = 31/58 (53%), Positives = 40/58 (68%)
 Frame = +2

Query: 1235 LGCKPMGVPIEQNHKIGSSEEDLRVHKAQYQRLVGKLIYLSHTRPDIAYPVSVVSQFM 1292
            L  KP   P++   K+G+ +    V K +YQRLVGKLIYLSHTRPDI++ V  +SQFM
Sbjct: 329  LDVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQFM 502


>BG453259 homologue to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (5%)
          Length = 657

 Score =  125 bits (313), Expect = 2e-28
 Identities = 75/143 (52%), Positives = 95/143 (65%), Gaps = 2/143 (1%)
 Frame = -2

Query: 1306 ILQYLKASPGRGLLFKKSEQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQ 1365
            +++ L +S  + ++FK+  +LSMEVY +   AG IVDR ST+GY MFLGGN+V     KQ
Sbjct: 566  LIEGLXSSGTQMIVFKRE*KLSMEVYXNTVCAGWIVDRGSTSGY*MFLGGNMV---E*KQ 396

Query: 1366 NVVARSSAEAEFRAMAQGVCELL--RMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQ 1423
            NVVAR      F   +QG+  ++   +KI LDDL I Y+ PM LF +N     IAHNPVQ
Sbjct: 395  NVVAR*VQRHNFELCSQGL*RVMDEELKIKLDDLIINYKDPMTLF*NNNFVSRIAHNPVQ 216

Query: 1424 HDRTKHIEIDRHFIKEKLNSSLI 1446
            H RTKHIEID+HFI EKL S LI
Sbjct: 215  HYRTKHIEIDQHFIIEKLYSGLI 147


>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
            sativa}, partial (9%)
          Length = 542

 Score =  117 bits (294), Expect = 3e-26
 Identities = 59/147 (40%), Positives = 93/147 (63%)
 Frame = +2

Query: 1334 ADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAMAQGVCELLRMKII 1393
            +D+AG    R+ST+GY   LG   ++W SKKQ VVA S+AEAE+ A      + + ++ I
Sbjct: 2    SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181

Query: 1394 LDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDRTKHIEIDRHFIKEKLNSSLISTQYVPS 1453
            L+ +  +   P +++CDNKSAI+++ NPV H R+KHI+I  H I+E +    +  +Y P+
Sbjct: 182  LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361

Query: 1454 GLQLADVLTKGLPLERFRELTCKLGMI 1480
              ++AD+ TK L +E F +L   LGM+
Sbjct: 362  EEKIADIFTKPLKIESFYKLKKMLGMM 442


>BE239977 weakly similar to GP|23237899|db polyprotein-like {Oryza sativa
           (japonica cultivar-group)}, partial (2%)
          Length = 514

 Score =  113 bits (282), Expect = 6e-25
 Identities = 50/96 (52%), Positives = 68/96 (70%), Gaps = 1/96 (1%)
 Frame = -2

Query: 730 VMTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKCYHP 789
           V+ SF+P VP  + L  R+FGC++FVH+H   R K D RA+KC+FI Y+S +KGY+CYHP
Sbjct: 507 VLPSFYPYVPTSNNLTPRIFGCTSFVHIHSDGRSKFDHRALKCVFIRYSSTQKGYRCYHP 328

Query: 790 PSRRVYISMDVTFQESESFY-PNPQLQGGDTQEAES 824
           PSR+ ++S DVTF E ES++  N    GG  +E ES
Sbjct: 327 PSRKYFVSRDVTFHEQESYFGQN*SSSGGKYKEDES 220


>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
            polyprotein [imported] - Arabidopsis thaliana, partial
            (10%)
          Length = 814

 Score =  112 bits (279), Expect = 1e-24
 Identities = 61/165 (36%), Positives = 105/165 (62%), Gaps = 2/165 (1%)
 Frame = +1

Query: 1301 QAVDRILQYLKASPGRGLLFKKS--EQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLV 1358
            QA+  +L+YL  S    L + K+  E+ ++E Y DADYAG++  R+S +G+   L G  +
Sbjct: 1    QALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTI 180

Query: 1359 TWRSKKQNVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIA 1418
            +W++ +Q+VV  S+ +AE+ A  +GV + + +K ++ +L I  E  +++ CD++SAI +A
Sbjct: 181  SWKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEY-VKIHCDSQSAIHLA 357

Query: 1419 HNPVQHDRTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTK 1463
            ++ V H+RTKHI+I  HFI++ + S  I  + + S    ADV TK
Sbjct: 358  NHQVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492


>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
            polyprotein from transposon TNT 1-94 [Contains: Protease
            (EC 3.4.23.-);, partial (7%)
          Length = 705

 Score = 66.6 bits (161), Expect(2) = 4e-24
 Identities = 36/77 (46%), Positives = 49/77 (62%)
 Frame = +1

Query: 1303 VDRILQYLKASPGRGLLFKKSEQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRS 1362
            V RI++Y+K + G  + F  SE L++  Y D+D+AG    R+STTGY   L G  V+W S
Sbjct: 1    VKRIMRYIKGTSGVAVCFGGSE-LTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177

Query: 1363 KKQNVVARSSAEAEFRA 1379
            K Q VVA S+ EAE+ A
Sbjct: 178  KLQTVVALSTTEAEYMA 228



 Score = 64.7 bits (156), Expect(2) = 4e-24
 Identities = 32/103 (31%), Positives = 59/103 (57%)
 Frame = +3

Query: 1379 AMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDRTKHIEIDRHFIK 1438
            ++ Q   E + M+ ++++L  K E  + ++CD++SA+ IA NP  H RTKHI I  HF++
Sbjct: 228  SLPQACKEAIWMQRLMEELGHKQEQ-ITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVR 404

Query: 1439 EKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCKLGMID 1481
            E +    +  Q + +   LAD +TK +  ++F       G+++
Sbjct: 405  EVVEEGSVDMQKIHTNDNLADAMTKSINTDKFIWCRSSYGLLE 533


>BG648737 weakly similar to GP|21433|emb|CA ORF3 {Solanum tuberosum}, partial
            (10%)
          Length = 804

 Score =  105 bits (261), Expect = 2e-22
 Identities = 79/267 (29%), Positives = 129/267 (47%), Gaps = 31/267 (11%)
 Frame = +3

Query: 784  YKCYHPPSRRVYISMDVTFQESESFYPNPQLQGGD-TQEAESPELSVIPLLQ------EP 836
            YKCY P +++ Y SMDVTF E + FY    +QG   T+E +  ++ V+  +        P
Sbjct: 3    YKCYSPITKKFYNSMDVTFFEDQPFYTKIGIQGESFTEEYQLWDIKVLESIHGENSDVSP 182

Query: 837  LMPSSIPITED----------SDDDDNGPEQVP--NQ----NDDNGLELVPDQNDDNGPE 880
             +  + PI             SD  +  P   P  NQ    N  + +  + +Q   +   
Sbjct: 183  QVNQTNPIVSYHLSSKIPPPVSDQPNIQPSIFPMSNQFDLSNSQSTIMPLSEQQPPSQRS 362

Query: 881  LVPDQNNVDRFRI---KYQRKVKPVLIQQQD-QPSDPEVSVPNPEPSNSYEH----NLDD 932
                   +  FR+   +Y+++    + Q QD   S+    + N + +   E       DD
Sbjct: 363  TSTQPAEICDFRVFTTRYKKQEGKRMQQIQDCSDSNSNFEIENTQDNEICEPIPTVEFDD 542

Query: 933  LPIALRKGKRSCAKYPISQYVSTQNLSVQHQSFISAIDSIRVPTSVQEVLKDKKWIQAMN 992
              I+LRK KRSC  +PI +++S   LS  H +F+S +D I++P SV E L +  W +A+ 
Sbjct: 543  RLISLRKDKRSCTSHPICKFISYDKLSPHHLAFVSNLDKIQIPNSVHESLTNP*WKKAIL 722

Query: 993  EEMHALDKNGTRKIVEKPNDKRTVGCK 1019
             E+HAL+KN T ++ + P+ K  +GCK
Sbjct: 723  GEIHALEKNETWELSDLPSGKHPMGCK 803


>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
           sativa} [Oryza sativa (japonica cultivar-group)],
           partial (8%)
          Length = 426

 Score =  103 bits (257), Expect = 5e-22
 Identities = 58/138 (42%), Positives = 77/138 (55%)
 Frame = +1

Query: 652 NFSEFLTKNGVVHELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAA 711
           +F  F+ K  +         PQQNGVAER NR LLE TRA+L    + K +W EAV TA 
Sbjct: 28  SF*HFVNKRVL*GNSXVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTAC 207

Query: 712 YLINRLPSRVLSNVSPVLVMTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIK 771
           Y+INR PS V+   +P+      +   P+       VFGC  +V  +   R KLDP++ K
Sbjct: 208 YVINRSPSTVIDLKTPM----EMWKGKPVDYS-SLHVFGCPVYVMYNSQERTKLDPKSRK 372

Query: 772 CIFIGYASDKKGYKCYHP 789
           CIF+GYA + KGY  + P
Sbjct: 373 CIFLGYADNVKGYXLWDP 426


>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
           [imported] - Arabidopsis thaliana, partial (7%)
          Length = 705

 Score = 99.4 bits (246), Expect = 9e-21
 Identities = 61/177 (34%), Positives = 92/177 (51%)
 Frame = -2

Query: 710 AAYLINRLPSRVLSNVSPVLVMTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRA 769
           A YLINR+P+RVL + +P  V+    PS+        RVFGC  +V V G  R KL+ R+
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYM-----RVFGCLCYVLVPGELRNKLEARS 540

Query: 770 IKCIFIGYASDKKGYKCYHPPSRRVYISMDVTFQESESFYPNPQLQGGDTQEAESPELSV 829
            K +FIGY++ +KGYKCY P +RRV +S DV F E   +Y     +  D ++  S +  V
Sbjct: 539 RKAMFIGYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYYEEKNQE--DLRDLTSDKAGV 366

Query: 830 IPLLQEPLMPSSIPITEDSDDDDNGPEQVPNQNDDNGLELVPDQNDDNGPELVPDQN 886
           + ++ E L    I + +D       PE+  + N+       P  + + G E    +N
Sbjct: 365 LRVILEGL---GIKMNQDQSTRSRQPEE--SSNEPRRAAQTPHLDHEGGSEPETQEN 210


>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
            partial (13%)
          Length = 494

 Score = 95.5 bits (236), Expect = 1e-19
 Identities = 53/124 (42%), Positives = 77/124 (61%), Gaps = 3/124 (2%)
 Frame = +1

Query: 1278 RPDIAYPVSVVSQFMHDPQERHLQAVDRILQYLKASPGRGLLF---KKSEQLSMEVYTDA 1334
            RPDI Y VSV+S+FMHDP++ HL A +RIL+Y++ +   GLLF    KSE   +  Y+D+
Sbjct: 121  RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300

Query: 1335 DYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAMAQGVCELLRMKIIL 1394
            D+ G   DRRST+GY        ++W +KKQ + A SS EAE+ A      + L +  ++
Sbjct: 301  DWCG---DRRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471

Query: 1395 DDLK 1398
             +LK
Sbjct: 472  KELK 483


>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
            polyprotein [imported] - Arabidopsis thaliana, partial
            (7%)
          Length = 763

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 45/89 (50%), Positives = 62/89 (69%)
 Frame = +2

Query: 1003 TRKIVEKPNDKRTVGCKWIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKM 1062
            T K+V+KP   + +G +WIY +K   DGTL +YKARLVAKGY +  GID+DE FAPV ++
Sbjct: 56   TLKLVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPVVRI 235

Query: 1063 NTVRIILSLAAHFDWELQQFDVKNAFLHG 1091
             T+ ++L+LAA     +   DVK AFL+G
Sbjct: 236  ETI*LLLALAATNGC*IHHIDVKIAFLNG 322


>AW684891 
          Length = 539

 Score = 73.6 bits (179), Expect(3) = 1e-18
 Identities = 41/94 (43%), Positives = 57/94 (60%)
 Frame = -3

Query: 586 SISNVSGAKWFVTFIDDCTRITWVFLMKDKSEVFQLFANFFHMIRTQFGKPIKRLRSDNG 645
           ++  + G KWF+ FI + T IT +FL K             H I  QF K I+RL S+ G
Sbjct: 366 TLIQIYGXKWFLAFIHNSTSIT*LFLKK-------------HEIWFQFVKSIERLCSNKG 226

Query: 646 KE*VNKNFSEFLTKNGVVHELTCVDAPQQNGVAE 679
           K  V++N S++L +NGV  EL CV++PQQNGV+E
Sbjct: 225 KVYVDQNLSQYLEENGVSQELKCVNSPQQNGVSE 124



 Score = 38.5 bits (88), Expect(3) = 1e-18
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -2

Query: 540 FSKVSVESFHCDVCQFSKHHRSTFLPSNNK 569
           F+K  +E FHCDV Q + HH  +F PS +K
Sbjct: 463 FTKELIEYFHCDVFQLAXHHPESFFPSKDK 374



 Score = 20.8 bits (42), Expect(3) = 1e-18
 Identities = 8/12 (66%), Positives = 10/12 (82%)
 Frame = -2

Query: 690 RALLFQMNVPKF 701
           R L+FQ+ VPKF
Sbjct: 127 RVLIFQIFVPKF 92


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.319    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,375,558
Number of Sequences: 36976
Number of extensions: 721272
Number of successful extensions: 3927
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 3797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3888
length of query: 1485
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1377
effective length of database: 5,021,319
effective search space: 6914356263
effective search space used: 6914356263
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)