TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0307.15
         (326 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW686998 weakly similar to GP|15217032|gb| EM4c {Ovis aries}, pa...    92  3e-19
BQ148846 similar to GP|10176736|dbj gb|AAD32815.2~gene_id:K18I23...    39  0.003
TC87224 weakly similar to GP|14532856|gb|AAK64110.1 unknown prot...    32  0.44
TC81279 similar to PIR|T47949|T47949 hypothetical protein F2A19....    31  0.57
TC79847 similar to GP|21689689|gb|AAM67466.1 unknown protein {Ar...    31  0.75
TC86963 similar to GP|15148918|gb|AAK84886.1 homeodomain leucine...    29  2.2
TC78361 weakly similar to PIR|H86392|H86392 hypothetical protein...    29  2.8
TC89139 similar to GP|14039799|gb|AAK53390.1 CLC-e chloride chan...    28  3.7
TC79908 similar to GP|14326543|gb|AAK60316.1 AT4g18020/T6K21_200...    28  6.3
TC87925 similar to GP|13605495|gb|AAK32741.1 At1g65410/T8F5_19 {...    28  6.3
BI272946                                                               28  6.3
TC80274 weakly similar to GP|15982797|gb|AAL09746.1 AT5g35440/MO...    27  8.2

>AW686998 weakly similar to GP|15217032|gb| EM4c {Ovis aries}, partial (8%)
          Length = 495

 Score = 92.0 bits (227), Expect = 3e-19
 Identities = 75/189 (39%), Positives = 92/189 (47%), Gaps = 3/189 (1%)
 Frame = +2

Query: 58  QQGRSNKDKVVVSQQKGQNPCLELPFCGDDSLGNVSSQESNLQLPSGGLEEKNLLGGAVV 117
           + G  N  K +    KG+NPC ELPF      GN SSQE +  LPSGG        G   
Sbjct: 23  EDGAENLLKKICHNDKGKNPCSELPFS-----GNNSSQEPS--LPSGGTGT-----GTDD 166

Query: 118 SGPTEVPVAVLGEIGQGRPLNEGFIDRGIESGQRDVRAVDNLGSPKCGGRAVELPTMSDS 177
           S  + V          GR  NEGFIDRGIE         DNLGS +C G +VE P +S  
Sbjct: 167 SNDSFV----------GRSQNEGFIDRGIEHD-------DNLGSSQCAGGSVEPPIVS-- 289

Query: 178 CDSRFPGLERCSVLQG-NAGPTSAAAAADLLKSC-TCSFCSKAAHIWSDLHYQDVKGRLS 235
             S FPGLERCS L+  +     A    + LK+C    FC+KA +IW        +G  +
Sbjct: 290 -GSMFPGLERCSALKNQDVENLDAHVGVEFLKNCYLFPFCTKAGYIWFGSPLPGCQG*TN 466

Query: 236 ALK-KSQKD 243
             K KSQK+
Sbjct: 467 CSKGKSQKE 493


>BQ148846 similar to GP|10176736|dbj gb|AAD32815.2~gene_id:K18I23.4~similar
           to unknown protein {Arabidopsis thaliana}, partial (7%)
          Length = 271

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 26/84 (30%), Positives = 42/84 (49%), Gaps = 11/84 (13%)
 Frame = +2

Query: 227 YQDVKGRLSALKKSQKDASNAVQKLSE--IKDSVMPDQQSSSESSKL-------ELALMH 277
           +QD+KGRL+AL++S++   + +       +      DQ       K        ++A +H
Sbjct: 5   HQDIKGRLAALRRSRRRVRSVITTELPFLMSKEFGADQNYDPCGMKFPEGLPTSKIAELH 184

Query: 278 Q--WKSLFDFMENTFAEESRQLES 299
           Q  W +LFD M+    EE +QLES
Sbjct: 185 QARWTALFDHMDEALIEEEKQLES 256


>TC87224 weakly similar to GP|14532856|gb|AAK64110.1 unknown protein
            {Arabidopsis thaliana}, partial (31%)
          Length = 1760

 Score = 31.6 bits (70), Expect = 0.44
 Identities = 19/67 (28%), Positives = 33/67 (48%), Gaps = 8/67 (11%)
 Frame = +1

Query: 230  VKGRLSALKKSQKDASNA--------VQKLSEIKDSVMPDQQSSSESSKLELALMHQWKS 281
            ++ R++ LKK + D+           +  L + KD    D  SSS+  KL   L H++ +
Sbjct: 964  IRNRINRLKKIEDDSEKKKLSCILLFINYLVKFKDQHSMDGISSSKFEKLPYTLHHRFTA 1143

Query: 282  LFDFMEN 288
            +FD  E+
Sbjct: 1144 MFDVSES 1164


>TC81279 similar to PIR|T47949|T47949 hypothetical protein F2A19.170 -
           Arabidopsis thaliana, partial (31%)
          Length = 1205

 Score = 31.2 bits (69), Expect = 0.57
 Identities = 15/72 (20%), Positives = 36/72 (49%)
 Frame = +2

Query: 237 LKKSQKDASNAVQKLSEIKDSVMPDQQSSSESSKLELALMHQWKSLFDFMENTFAEESRQ 296
           LKK+Q++   AVQ+L+ +K  ++  +   SE    +  ++ + +   +++    +   R 
Sbjct: 425 LKKTQQERDKAVQELTRLKQHLLEKENEESEKMDEDTKVIEELRDSNNYLRAQISHLERA 604

Query: 297 LESSFETLKDLR 308
           LE +    + L+
Sbjct: 605 LEQATSDQEKLK 640


>TC79847 similar to GP|21689689|gb|AAM67466.1 unknown protein {Arabidopsis
           thaliana}, partial (44%)
          Length = 1504

 Score = 30.8 bits (68), Expect = 0.75
 Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 6/124 (4%)
 Frame = +1

Query: 79  LELPFCGDDSLGNVSSQESNLQLPSG----GLEEKNLLGGAVVS--GPTEVPVAVLGEIG 132
           +E P  G  S+G V S  +   L SG          + G A V+      VP  V GE  
Sbjct: 667 VESPVIGGFSVGKVPSAGAIAGLFSGTEVAARTRVPIRGRAAVNFRWGVRVPAEVKGESA 846

Query: 133 QGRPLNEGFIDRGIESGQRDVRAVDNLGSPKCGGRAVELPTMSDSCDSRFPGLERCSVLQ 192
            GR         G+E    +   + NL   K G   V +PT +D  ++ F    +  VLQ
Sbjct: 847 FGRVPFLVMDKIGVEHLPAECGNLKNLKKGKVGAAGVGVPTSADVAETCFAVKRQMEVLQ 1026

Query: 193 GNAG 196
              G
Sbjct: 1027AENG 1038


>TC86963 similar to GP|15148918|gb|AAK84886.1 homeodomain leucine zipper
           protein HDZ2 {Phaseolus vulgaris}, partial (87%)
          Length = 1519

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 24/92 (26%), Positives = 45/92 (48%)
 Frame = +1

Query: 226 HYQDVKGRLSALKKSQKDASNAVQKLSEIKDSVMPDQQSSSESSKLELALMHQWKSLFDF 285
           H Q  K RLS+      +    ++K  E+++ + PD++        EL L  +  +++ F
Sbjct: 721 HQQGKKRRLSS------EQVQFLEKSFEVENKLEPDRKVQLAK---ELGLQPRQVAIW-F 870

Query: 286 MENTFAEESRQLESSFETLKDLRDNCKNDLDS 317
                  +++QLE  + TLK   D+ K+D D+
Sbjct: 871 QNRRARFKTKQLEKDYGTLKASFDSLKDDYDN 966


>TC78361 weakly similar to PIR|H86392|H86392 hypothetical protein AAF98560.1
           [imported] - Arabidopsis thaliana, partial (28%)
          Length = 1374

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 15/43 (34%), Positives = 23/43 (52%)
 Frame = +1

Query: 93  SSQESNLQLPSGGLEEKNLLGGAVVSGPTEVPVAVLGEIGQGR 135
           S  +SNL +  G   EK L+G  V+  P     ++  E+G+GR
Sbjct: 787 SGSDSNLNVRDGDEAEKRLMGTCVIPMPEMELSSLDDEVGKGR 915


>TC89139 similar to GP|14039799|gb|AAK53390.1 CLC-e chloride channel protein
           {Arabidopsis thaliana}, partial (24%)
          Length = 1216

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 176 DSCDSRFPGLERCSVLQGNAGPTSAAAAADLLKSC 210
           +S  S FP +  CS ++ + G TSA   + L KSC
Sbjct: 505 NSNSSSFPEISSCSSIELSTGNTSAEGMSYLSKSC 609


>TC79908 similar to GP|14326543|gb|AAK60316.1 AT4g18020/T6K21_200
           {Arabidopsis thaliana}, partial (44%)
          Length = 1599

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 40/163 (24%), Positives = 64/163 (38%), Gaps = 17/163 (10%)
 Frame = +2

Query: 175 SDSCDSRFPGLERCSVLQGNAGPTSAAAAADLLKSC-------TCSFCSKAA------HI 221
           S SC+  F  LE    L     PT   + +D L +           F SK        +I
Sbjct: 497 SSSCEGGFRFLENAKDL-----PTIMTSNSDCLNTMMKCIALGAVEFLSKPLSEDKLRNI 661

Query: 222 WSDLHYQDVKGRLSALKKSQKDASNAVQKLSEIKDSVMPDQQSSSESSKLELALMHQWKS 281
           W  + ++     +SAL +S K    +V  + +I+     +Q  S  S +LE  L     S
Sbjct: 662 WQHVVHKAFNAGVSALSESLKPVKESVASILQIQTD--NEQNESKASVELEQVLR---SS 826

Query: 282 LFDFMENTFAEESRQLESSFETLKD----LRDNCKNDLDSTDN 320
             D  E+  A  + QL+     L D     + NC  + +S ++
Sbjct: 827 DNDHHEHYPAPSTPQLKQVGRLLDDGDCQEQTNCSTEKESGEH 955


>TC87925 similar to GP|13605495|gb|AAK32741.1 At1g65410/T8F5_19 {Arabidopsis
           thaliana}, partial (82%)
          Length = 1699

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 132 GQGRPLNEGFIDRGIESGQRDVRAVDNLGSPKCG 165
           GQGR L     +R  +  +RD+ + D  G PKCG
Sbjct: 621 GQGRSLYSR*KERWFDK*RRDIWSSDWTGVPKCG 722


>BI272946 
          Length = 212

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 46  KKKVQSKLGVQAQQGRSNKDKVVVSQQ 72
           KK  QSK  V  ++G+ +K KVV SQ+
Sbjct: 103 KKGTQSKKNVGRKKGKQSKSKVVTSQR 183


>TC80274 weakly similar to GP|15982797|gb|AAL09746.1 AT5g35440/MOK9_2
           {Arabidopsis thaliana}, partial (14%)
          Length = 1163

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 19/51 (37%), Positives = 24/51 (46%), Gaps = 1/51 (1%)
 Frame = +3

Query: 151 RDVRAVDNLGSPKCGGRAVELPTMSDSCDSRFPGLERCSVLQ-GNAGPTSA 200
           R   A D L     GG +VELP   D C+     +ER    + GN G T+A
Sbjct: 558 RPKEAADYLSYYLSGGNSVELPFSQDDCEKL--QVERTVEFEDGNGGSTAA 704


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.311    0.129    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,230,764
Number of Sequences: 36976
Number of extensions: 118794
Number of successful extensions: 489
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of query: 326
length of database: 9,014,727
effective HSP length: 96
effective length of query: 230
effective length of database: 5,465,031
effective search space: 1256957130
effective search space used: 1256957130
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)