TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0306.4
         (968 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna...   282  4e-76
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin...   215  8e-56
BG586326 similar to PIR|G84493|G8 probable retroelement pol poly...   211  8e-55
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro...   154  2e-37
BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ...    95  3e-29
BG644740 similar to PIR|A84460|A84 probable retroelement pol pol...    87  1e-18
BG454871 weakly similar to GP|10140673|g putative gag-pol polypr...    65  2e-14
BF003873 similar to GP|14715222|em putative polyprotein {Cicer a...    61  2e-13
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana...    50  3e-06
BG452991 PIR|A25875|A25 histone H4 - Tetrahymena thermophila, pa...    46  8e-05
BG644699 similar to PIR|T07863|T078 probable polyprotein - pinea...    44  4e-04
BG644733 weakly similar to GP|15289942|db putative polyprotein {...    43  7e-04
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ...    41  0.002
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis...    38  0.016
TC93746 weakly similar to GP|22830935|dbj|BAC15800. hypothetical...    36  0.082
BG586308 weakly similar to PIR|F84528|F8 probable retroelement p...    33  0.69
BQ137251 similar to GP|18026135|gb| cytochrome c oxidase subunit...    29  7.6
TC78954 weakly similar to PIR|D96810|D96810 hypothetical protein...    29  7.6
BQ150994 similar to GP|22122173|dbj preproneuropeptide B {Homo s...    29  10.0

>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
           alternata}, partial (21%)
          Length = 1540

 Score =  282 bits (722), Expect = 4e-76
 Identities = 156/352 (44%), Positives = 215/352 (60%), Gaps = 7/352 (1%)
 Frame = +1

Query: 31  FGPISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPWGAPVLLVKKKDGKSRLCVDYR 90
           +GP+    Y M+  EL+ LK  LEDL  KGFI+ S S  GAPVL V+K  G  R CVDYR
Sbjct: 469 WGPL----YGMSRQELLVLKKTLEDLLDKGFIKASGSAAGAPVLFVRKPGGGIRFCVDYR 636

Query: 91  QLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYHQIRVKTEDIPKTAFRTRYGHY 150
            LN  T K+RYPLP I + + ++ G   F+K+D+ +++H++R+K ED  KTAFRTRYG +
Sbjct: 637 ALNAITKKDRYPLPLISETLRRVAGARWFTKLDVVAAFHKMRIKDEDQEKTAFRTRYGLF 816

Query: 151 EYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDILIYS*DT-KEHEEHLCQVLHV 209
           E++V PFG+T APA F  Y+N+  HEFLD FV  +IDD+LIY+  + K+HE  + +VL  
Sbjct: 817 EWIVCPFGLTGAPATFQRYINKTLHEFLDDFVTAYIDDVLIYTTGSKKDHEAQVRRVLRR 996

Query: 210 LREKKLYANPSKCEFWLEEVNFLGHVISK-EGIVVDPAKVETVLAWEQPKTVTEIRSFVG 268
           L +  L  +P KCEF +  V ++G +++  +G+  DP K+  +  W  P +V   RSF+G
Sbjct: 997 LADAGLSLDPKKCEFSVTTVKYVGFILTAGKGVSCDPLKLAAIRDWLPPGSVKGARSFLG 1176

Query: 269 LAGYYRRFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQTLKERLTTSPVLILPQPEEP 328
              YY+ FI G+++I  PLT+LTRKD PF W    + +F  LK      PVL +  PE  
Sbjct: 1177FCNYYKDFIPGYSEITEPLTRLTRKDFPFRWGAEQEAAFTKLKRLFAEEPVLRMFDPEAV 1356

Query: 329 YEVYCDASHQGLGCVLMQH-----WKVVAYASRQLKTHEKNYPTHDLELTAI 375
             V  D S   LG VL Q         VA+ S++L   E NYP HD EL A+
Sbjct: 1357TTVETDCSGFALGGVLTQEDGTGAAHPVAFHSQRLSPAEYNYPIHDKELLAV 1512


>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
           Ty3-Gypsy type {Oryza sativa}, partial (15%)
          Length = 716

 Score =  215 bits (547), Expect = 8e-56
 Identities = 120/235 (51%), Positives = 150/235 (63%), Gaps = 5/235 (2%)
 Frame = +2

Query: 15  LPPVRDVEFVIDIVRGFGPISIAPYRMAPAELVELKSQLEDLSAKGFIRPSVSPWGAPVL 74
           +PP   ++F ID++    PI I  YR+ P +L  LK QL+DL  KGFI+PS+ P G  VL
Sbjct: 17  VPPEWKIDFGIDLLPNMNPI*IPSYRINPLKLKVLKLQLKDLLEKGFIQPSIYP*GVVVL 196

Query: 75  LVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAVFSKIDLKSSYHQIRVK 134
            +KKKDG  R+ +DY QLN   +K +YPLP ID+L D L+G   F KIDL+   HQ RV 
Sbjct: 197 FLKKKDGFLRMSIDYPQLNNVNIKIKYPLPLIDELFDNLQGSKWFFKIDLRLG*HQHRVI 376

Query: 135 TEDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDILIYS* 194
            ED+PKTAFR RYGHYE LVM FG TN P  FM+ MNR+F ++LD  V+VF +DILIYS 
Sbjct: 377 GEDVPKTAFRIRYGHYEILVMSFG*TNPPMAFMELMNRVFQDYLDSLVIVFSNDILIYSK 556

Query: 195 DTKEHEEHLCQVLHVLREKKLYANPSKCEF----WLEEVNFLG-HVISKEGIVVD 244
           +  EHE HL   L VL++  L      C+      L EV F   HVIS EG+ VD
Sbjct: 557 NENEHENHLRLALKVLKDIGL------CQISYV*ILVEVGFFSLHVISGEGLKVD 703


>BG586326 similar to PIR|G84493|G8 probable retroelement pol polyprotein
           [imported] - Arabidopsis thaliana, partial (13%)
          Length = 736

 Score =  211 bits (538), Expect = 8e-55
 Identities = 117/243 (48%), Positives = 154/243 (63%), Gaps = 2/243 (0%)
 Frame = +2

Query: 315 TTSPVLILPQPEEPYEVYCDASHQGLGCVLMQHWKVVAYASRQLKTHEKNYPTHDLELTA 374
           T++P+L+LP+    Y VY DAS  GLGCVL QH KV+AYASRQL+ HE NYPTHDLE+ A
Sbjct: 8   TSAPILVLPELIT-YVVYTDASITGLGCVLTQHEKVIAYASRQLRKHEGNYPTHDLEMAA 184

Query: 375 IVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFIKDYEFTLQYHPGKA 434
           +VF+LKIWR YLYG    I +DHKSLKY+F Q ELN+RQRRWMEF+ DY+  + Y+PGKA
Sbjct: 185 VVFALKIWRSYLYGAKVQIHTDHKSLKYIFTQPELNLRQRRWMEFVADYDLDITYYPGKA 364

Query: 435 NVVADALSRKMHVSLKMVKELELLE-QFRDMSLGVTPYEGMLKFGMIRI-ASGLMEEIRE 492
           N+VADALSR+  V +   +E + L+   R + L V   +     G+  +  + L   IR 
Sbjct: 365 NLVADALSRR-RVDVSAEREADDLDGMVRALRLNVLT-KATESLGLEAVNQADLFTRIRL 538

Query: 493 RQLQDVFLLEKRNLVIQGKDPEFKIGTDNILRCKDRVCVPTNPELRRLIMDEGHKSKWRI 552
            Q QD    E    V Q    E++   D  +    R+ VP +  L+  IM E HKS++ +
Sbjct: 539 AQGQD----ENLQKVAQNDRTEYQTAKDGTILVNGRISVPNDRSLKEEIMSEAHKSRFSV 706

Query: 553 HPG 555
           HPG
Sbjct: 707 HPG 715


>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
           blast fungus gypsy retroelement (fragment), partial
           (14%)
          Length = 1708

 Score =  154 bits (389), Expect = 2e-37
 Identities = 108/341 (31%), Positives = 168/341 (48%), Gaps = 7/341 (2%)
 Frame = +2

Query: 536 ELRRLIMDEGHKSKWRIHPGMTKMYQDLKLNFWWPGMKKQVVEYVAACLTCQKAKVEHQR 595
           ELR  ++ E H S    HPG     + +   F+WPG  + V  +V  C  C    +  Q 
Sbjct: 164 ELRTKLVQESHDSTAAGHPGRNGTLEIVSRKFFWPGQSQTVRRFVRNCDVCGGIHIWRQA 343

Query: 596 PAGMLQSLDVPEWKWDSISMDFVVALPRTQKRHDS-IWVIVDRLTKSAHFLPGRTTYNVE 654
             G L+ L VP      +SMDF+ +LP T+ R    +WVIVDRL+KS   L    T   E
Sbjct: 344 KRGFLKPLPVPNRLHSDLSMDFITSLPPTRGRGSQYLWVIVDRLSKSVT-LEEMDTMEAE 520

Query: 655 KLAEIYVAEIVRLHGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTER 714
             A+ +++   R HG+  SIVSD    +   FW       G    LS++YHPQ DG TER
Sbjct: 521 ACAQRFLSCHYRFHGMPQSIVSDRGSNWVGRFWREFCRLTGVTQLLSTSYHPQTDGGTER 700

Query: 715 TIQSLEDLLRACVLDNRGSWDDLQPLIEFTYNNNFHASIGMAPYEALYGRKCRTPLCWYQ 774
             Q ++ +LRA V  ++ +W DL P ++    N  ++SIG  P+   +G     P+   +
Sbjct: 701 WNQEIQAVLRAYVCWSQDNWGDLLPTVQLALRNRHNSSIGATPFFVEHGYHV-DPIPTVE 877

Query: 775 D-GESLLIGPELLQQTTEKVKQ----IREKMRASQSRQKSYADQRRRTLE-FEEGDHVFL 828
           D G  +  G    Q   +++K     I+ ++ A+Q R ++ A++RR   + ++ GD V+L
Sbjct: 878 DTGGVVSEGEAAAQLLVKRMKDVTGFIQAEIVAAQQRSEASANKRRCPADRYQVGDKVWL 1057

Query: 829 RVTQTTGVGRAIKSRKLTPKFIGPYQITRRVGPVAYQIALP 869
            V+       + K   L  K    Y++TR V P   ++ +P
Sbjct: 1058NVSNYKSPRPSKKLDWLHHK----YEVTRFVTPHVVELNVP 1168


>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
           thaliana, partial (13%)
          Length = 763

 Score = 95.1 bits (235), Expect(2) = 3e-29
 Identities = 48/133 (36%), Positives = 77/133 (57%)
 Frame = +2

Query: 136 EDIPKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHEFLDRFVVVFIDDILIYS*D 195
           +D+ KTAF T  G Y Y VMPFG+ NA + +   +NR+F + L   + V+IDD+L+ S  
Sbjct: 11  DDLEKTAFITDRGTYCYKVMPFGLKNAGSTYQRLVNRMFADKLGNTMEVYIDDMLVKSLR 190

Query: 196 TKEHEEHLCQVLHVLREKKLYANPSKCEFWLEEVNFLGHVISKEGIVVDPAKVETVLAWE 255
             +H  HL +    L E  +  NP+KC F +    FLG++++++GI V+P ++  +L   
Sbjct: 191 ATDHLNHLKE*FKTLDEYIMKLNPAKCTFGVTSGEFLGYIVTQQGIEVNPKQITAILDLP 370

Query: 256 QPKTVTEIRSFVG 268
            PK   E++   G
Sbjct: 371 SPKNSREVQRLTG 409



 Score = 52.8 bits (125), Expect(2) = 3e-29
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
 Frame = +3

Query: 275 RFIEGFAKIVGPLTQLTRKDQPFAWTEACKTSFQTLKERLTTSPVLILPQPEEPYEVYCD 334
           RFI        P  +L   ++ F W E C+ +F+ LK+ LTT PVL  P+  +   +Y  
Sbjct: 429 RFISRSTDKCLPFYKLLCGNKRFVWDEKCEEAFEQLKQYLTTPPVLSKPEAGDTLSLYIA 608

Query: 335 ASHQGLGCVLMQ----HWKVVAYASRQLKTHEKNYPTHDLELTAIVFSLK 380
            S   +  VL++      K + Y S+++   E  YPT +    A++ S +
Sbjct: 609 ISSTAVSSVLIREDRGEQKPIFYTSKRMTDPETRYPTLEKMAFAVITSAR 758


>BG644740 similar to PIR|A84460|A84 probable retroelement pol polyprotein
           [imported] - Arabidopsis thaliana, partial (4%)
          Length = 754

 Score = 86.7 bits (213), Expect(2) = 1e-18
 Identities = 39/67 (58%), Positives = 51/67 (75%)
 Frame = -1

Query: 59  KGFIRPSVSPWGAPVLLVKKKDGKSRLCVDYRQLNKATVKNRYPLPRIDDLMDQLRGDAV 118
           K F +PS+SP GA +L V+KKDG  R+C+DYRQ NK T KN+YPLPRID+L D+++ D  
Sbjct: 274 KRFQQPSISP*GAALLFVRKKDGYFRMCIDYRQFNKVTTKNKYPLPRIDNLFDKIQEDCY 95

Query: 119 FSKIDLK 125
           F  IDL+
Sbjct: 94  F*NIDLR 74



 Score = 25.4 bits (54), Expect(2) = 1e-18
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 128 YHQIRVKTEDIPKTAFRTRYGH 149
           YHQ RV   +IPKT   T  G+
Sbjct: 68  YHQFRVNEVNIPKTTLLTWRGY 3


>BG454871 weakly similar to GP|10140673|g putative gag-pol polyprotein {Oryza
           sativa (japonica cultivar-group)}, partial (7%)
          Length = 674

 Score = 65.5 bits (158), Expect(2) = 2e-14
 Identities = 33/81 (40%), Positives = 45/81 (54%)
 Frame = +2

Query: 684 SHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQSLEDLLRACVLDNRGSWDDLQPLIEF 743
           S+FW  L    GT L +SSAYHP  DGQ+E   +  E  LR  +  +   W    P  E+
Sbjct: 32  SNFWKQLFKLHGTILTMSSAYHP*SDGQSEALNKGXEMYLRCLMFTDPLKWSKAFPWAEY 211

Query: 744 TYNNNFHASIGMAPYEALYGR 764
            YN +++ S  M P++ALYGR
Sbjct: 212 WYNTSYNISAAMTPFKALYGR 274



 Score = 32.7 bits (73), Expect(2) = 2e-14
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +1

Query: 803 SQSRQKSYADQRRRTLEFEEGDHVFLRVT--QTTGVGRAIKSRKLTPKFIGPYQITRRVG 860
           +Q   K  AD++RR  EF+ G+HV +++   Q + V      +  +P F     +     
Sbjct: 388 AQQTMKHQADKKRRHFEFQLGEHVLVKLQPYQQSSVALRKYQKFGSPNFGSLLTVCSL*V 567

Query: 861 PVAYQIALPPFLPIFTM 877
             A+    PP+L  FT+
Sbjct: 568 ESAFHCKSPPYLSCFTI 618


>BF003873 similar to GP|14715222|em putative polyprotein {Cicer arietinum},
           partial (82%)
          Length = 559

 Score = 60.8 bits (146), Expect(2) = 2e-13
 Identities = 27/38 (71%), Positives = 33/38 (86%)
 Frame = +2

Query: 835 GVGRAIKSRKLTPKFIGPYQITRRVGPVAYQIALPPFL 872
           GVGRA+KS+KLT +FIGPYQI+ RVG VAY++ LPP L
Sbjct: 2   GVGRALKSKKLTVRFIGPYQISERVGTVAYRVGLPPHL 115



 Score = 33.9 bits (76), Expect(2) = 2e-13
 Identities = 34/96 (35%), Positives = 48/96 (49%), Gaps = 3/96 (3%)
 Frame = +3

Query: 874 IFTMYFMCRS*GSTFQTRHM*SSQTTLNCRMISLLRHR--RSALGTEE*NS*EGSRLH** 931
           I  M FMCR+ GS F+   M*S    + C+  + LR R  R  L  E+*  *E  R   *
Sbjct: 120 ICMMSFMCRNFGSMFRIHLM*S--RVMMCKSETTLR*RLYR*GLMIEK*RH*EARRYLL* 293

Query: 932 KCYGT-TIRETLHGNWKTRSRNCIPDFLRKPEFRGR 966
           + +GT  + +   G+ + R  + I   L +  FRGR
Sbjct: 294 ESFGTERMVKA*RGSLRVRWWSLIQSCLHEVNFRGR 401


>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
           (10%)
          Length = 624

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 5/198 (2%)
 Frame = +2

Query: 515 FKIGTDNI-LRCKDRVCVPTNPELRRLIMDEGHKSKWRIHPGMTKMYQDLK-LNFWWPGM 572
           +K   DNI +RC     +P        I+   H S +  H  ++K    ++   FWWP M
Sbjct: 44  YKQCADNIYIRCVAEEEIPG-------ILFHCHGSNYAGHFAVSKTVSKIQQAGFWWPTM 202

Query: 573 KKQVVEYVAACLTCQK---AKVEHQRPAGMLQSLDVPEWKWDSISMDFVVALPRTQKRHD 629
            K    +++ C  CQ+       ++ P   +  ++V    +D   +DF+   P +   + 
Sbjct: 203 FKDAHSFISKCDPCQRQGNIS*RNEMPQNFILEVEV----FDVWGIDFMGPFP-SSYNNK 367

Query: 630 SIWVIVDRLTKSAHFLPGRTTYNVEKLAEIYVAEIVRLHGVSTSIVSDSDPKFTSHFWGA 689
            I V VD ++K    +   T  +   + +++ + I    GV   ++SD    F +  +  
Sbjct: 368 YILVAVDYVSKWVEAIASPTN-DATVVVKMFKSVIFPRFGVPRVVISDGGSHFINKVFEK 544

Query: 690 LHDALGTKLRLSSAYHPQ 707
           L    G + ++++AYHPQ
Sbjct: 545 LLKKNGVRHKVATAYHPQ 598


>BG452991 PIR|A25875|A25 histone H4 - Tetrahymena thermophila, partial (33%)
          Length = 560

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 25/72 (34%), Positives = 42/72 (57%)
 Frame = +3

Query: 458 LEQFRDMSLGVTPYEGMLKFGMIRIASGLMEEIRERQLQDVFLLEKRNLVIQGKDPEFKI 517
           LEQFRD+SL        +K GM++I +  ++ I+E Q  DV L++      Q +D +FK+
Sbjct: 69  LEQFRDLSLVCEVSPQSVKLGMLKINNEFLDSIKEAQKVDVKLVDLMFGNNQTEDGDFKV 248

Query: 518 GTDNILRCKDRV 529
               +L+ +DR+
Sbjct: 249 DDQGVLQFRDRI 284


>BG644699 similar to PIR|T07863|T078 probable polyprotein - pineapple
           retrotransposon dea1 (fragment), partial (5%)
          Length = 231

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 5/57 (8%)
 Frame = +2

Query: 824 DHVFLRVTQTT-GVGRAIKSRKLTPKFIGPYQITRRVGPVAYQIALPPFL----PIF 875
           + V L+V  T  G  R  K  KL+ ++IGP+++ +R+G VAY++ALPP L    P+F
Sbjct: 2   EQVLLKVLPTERGDCRFGKRGKLSLRYIGPFEVIKRIGEVAYELALPPGLSGVHPVF 172


>BG644733 weakly similar to GP|15289942|db putative polyprotein {Oryza sativa
           (japonica cultivar-group)}, partial (1%)
          Length = 174

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 21/43 (48%), Positives = 31/43 (71%)
 Frame = -3

Query: 626 KRHDSIWVIVDRLTKSAHFLPGRTTYNVEKLAEIYVAEIVRLH 668
           K ++SI V+VDRLTKS  F+P +T+Y+ +  A I + EIV +H
Sbjct: 130 KSYESI*VVVDRLTKSTLFIPFKTSYSAK*YARILLDEIVCIH 2


>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
           melanogaster}, partial (20%)
          Length = 192

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
 Frame = +1

Query: 339 GLGCVLMQ-----HWKVVAYASRQLKTHEKNYPTHDLELTAIVFSLKIWRHYLYGCTFTI 393
           G+G  L Q     H   +AYASR L   E+NY   + E  A +++++ +RHYL+G  F +
Sbjct: 13  GIGAGLSQKDEENHEHPIAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYLHGPKFEL 192


>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
           chromosome II BAC F26H6; putative retroelement pol
           polyprotein, partial (1%)
          Length = 636

 Score = 38.1 bits (87), Expect = 0.016
 Identities = 21/74 (28%), Positives = 40/74 (53%), Gaps = 3/74 (4%)
 Frame = -2

Query: 374 AIVFSLKIWRHYLYGCTFTIFSDHKSLKYLFDQKELNMRQRRWMEFIKDYEFTLQYHPGK 433
           A+ ++ K  RHY+   T  + S    +KY+F++  L  R  RW   + +Y+  ++Y   K
Sbjct: 623 ALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYD--IEYRSQK 450

Query: 434 A---NVVADALSRK 444
           A   +++AD L+ +
Sbjct: 449 AIKGSILADHLAHQ 408


>TC93746 weakly similar to GP|22830935|dbj|BAC15800. hypothetical
           protein~similar to gag-pol polyprotein {Oryza sativa
           (japonica cultivar-group)}, partial (4%)
          Length = 1019

 Score = 35.8 bits (81), Expect = 0.082
 Identities = 15/41 (36%), Positives = 27/41 (65%)
 Frame = +2

Query: 605 VPEWKWDSISMDFVVALPRTQKRHDSIWVIVDRLTKSAHFL 645
           VP+  W+ +++DF + L  TQ+  DS  V+ D+ ++ AHF+
Sbjct: 476 VPKPPWEDVTIDFSLGLL*TQQLKDSKMVVGDKFSRMAHFI 598


>BG586308 weakly similar to PIR|F84528|F8 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (7%)
          Length = 686

 Score = 32.7 bits (73), Expect = 0.69
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = -2

Query: 668 HGVSTSIVSDSDPKFTSHFWGALHDALGTKLRLSSAYHPQIDGQTERTIQSLEDLLRACV 727
           HG+   IV+D+   F S+ +    +    +L  +S  +PQ +GQ E + + + D L+  +
Sbjct: 685 HGLPYEIVTDNGSHFISNKFREFCERWRIRLNTASPRYPQSNGQAEASNKIIIDGLKKRL 506

Query: 728 LDNRGSWDD 736
              +G W D
Sbjct: 505 DLKKGCWAD 479


>BQ137251 similar to GP|18026135|gb| cytochrome c oxidase subunit II
           {Sphaerospira fraseri}, partial (12%)
          Length = 1073

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = -3

Query: 699 RLSSAYHPQIDGQTERTIQSLEDLLRACVLDNRGSWDDLQPLIEFTYNNNFHASIGMAPY 758
           RLS  + P  D    R +  L  LLR        SW    PL+EF ++    A  G AP 
Sbjct: 300 RLSCPFRPPPDTGL-RNLSFLPPLLRNFCFSVSLSWRQPSPLVEFRWSPRCAARAGRAPV 124

Query: 759 EAL 761
            +L
Sbjct: 123 VSL 115


>TC78954 weakly similar to PIR|D96810|D96810 hypothetical protein T11I11.6
            [imported] - Arabidopsis thaliana, partial (45%)
          Length = 2329

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 20/67 (29%), Positives = 34/67 (49%)
 Frame = +1

Query: 401  KYLFDQKELNMRQRRWMEFIKDYEFTLQYHPGKANVVADALSRKMHVSLKMVKELELLEQ 460
            K +  + + N +  RW   I+DYE  ++  PG    VA AL  ++ + LKM++     E 
Sbjct: 1711 KAMLRRADCNAKLERWEAAIQDYEMLIREKPGDEE-VARALF-EIQLKLKMLRG----ED 1872

Query: 461  FRDMSLG 467
             +D+  G
Sbjct: 1873 VKDLKFG 1893


>BQ150994 similar to GP|22122173|dbj preproneuropeptide B {Homo sapiens},
           partial (15%)
          Length = 1036

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +1

Query: 788 QTTEKVKQIREKMRASQSRQKSYADQRRRTLEFEEGDHVFLRVTQTTGVGRAIKSRKLTP 847
           QTTEK  Q REK RA + R+   ++ ++ T   ++  H   R T++    R  ++    P
Sbjct: 526 QTTEKKDQTREKQRA-EKRRDGRSETQQSTQHAQDPRHPRTRATRSEEGPRGTRTEDNQP 702

Query: 848 KFI 850
             I
Sbjct: 703 PTI 711


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.328    0.141    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,497,749
Number of Sequences: 36976
Number of extensions: 432911
Number of successful extensions: 2416
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1787
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 594
Number of HSP's gapped (non-prelim): 1918
length of query: 968
length of database: 9,014,727
effective HSP length: 105
effective length of query: 863
effective length of database: 5,132,247
effective search space: 4429129161
effective search space used: 4429129161
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)