TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0304.9
         (156 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC91254                                                                58  2e-09
BF649128 weakly similar to GP|17979475|gb AT3g25150/MJL12_9 {Ara...    27  4.4
TC78076 similar to GP|17017308|gb|AAL33611.1 SGT1a {Arabidopsis ...    26  5.7
TC86959 similar to GP|18086573|gb|AAL57710.1 AT5g15260/F8M21_150...    26  5.7
TC87467 similar to GP|17473624|gb|AAL38275.1 unknown protein {Ar...    26  5.7
TC84848 homologue to GP|21554112|gb|AAM63192.1 unknown {Arabidop...    25  9.8
AW696480 weakly similar to SP|P03211|EBN1_ EBNA-1 nuclear protei...    25  9.8

>TC91254 
          Length = 678

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 31/53 (58%), Positives = 35/53 (65%), Gaps = 6/53 (11%)
 Frame = +2

Query: 99  AVRYLSYRLRATDGCRSDIIINLSVKL------LGSPDTCQTVIGIPVTAVRG 145
           +VRYLSYRLR  DG R   IIN+SV+L        + DTC TVIGIPVT  RG
Sbjct: 20  SVRYLSYRLRGKDGSRGHAIINISVRLEITTLMSSNMDTCHTVIGIPVTTFRG 178


>BF649128 weakly similar to GP|17979475|gb AT3g25150/MJL12_9 {Arabidopsis
           thaliana}, partial (25%)
          Length = 527

 Score = 26.6 bits (57), Expect = 4.4
 Identities = 13/49 (26%), Positives = 26/49 (52%)
 Frame = -2

Query: 82  CMIPALDIGFLNLRDSAAVRYLSYRLRATDGCRSDIIINLSVKLLGSPD 130
           CMI  LD  F+N+ ++     +++ LR+ +   S  ++N+ +    S D
Sbjct: 481 CMIRFLDFIFINISENIIQNKVAFLLRSKEETLSKFLLNVILSYHKSSD 335


>TC78076 similar to GP|17017308|gb|AAL33611.1 SGT1a {Arabidopsis thaliana},
           partial (87%)
          Length = 1493

 Score = 26.2 bits (56), Expect = 5.7
 Identities = 11/23 (47%), Positives = 16/23 (68%)
 Frame = -1

Query: 19  SSYFITLTNLSNHLVYSYDGGGA 41
           SS+F + +NLS  LV+ +D G A
Sbjct: 998 SSFFTSASNLSQSLVFDFDDGYA 930


>TC86959 similar to GP|18086573|gb|AAL57710.1 AT5g15260/F8M21_150
           {Arabidopsis thaliana}, partial (29%)
          Length = 1380

 Score = 26.2 bits (56), Expect = 5.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 37  DGGGAEEHMFRVPVDH 52
           DGGG ++ +F++P DH
Sbjct: 890 DGGGIKKGLFKIPCDH 937


>TC87467 similar to GP|17473624|gb|AAL38275.1 unknown protein {Arabidopsis
           thaliana}, partial (44%)
          Length = 990

 Score = 26.2 bits (56), Expect = 5.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 14  LGKYSSSYFITLTNLSNHLVYSY 36
           +G  S +YFITL+ L +H+ Y +
Sbjct: 513 IGNESFNYFITLSTLPSHVFYIF 445


>TC84848 homologue to GP|21554112|gb|AAM63192.1 unknown {Arabidopsis
           thaliana}, partial (7%)
          Length = 772

 Score = 25.4 bits (54), Expect = 9.8
 Identities = 9/22 (40%), Positives = 15/22 (67%)
 Frame = +1

Query: 48  VPVDHTFFFDTQHSSLQLHLYN 69
           + V+HT +FD   + L +HLY+
Sbjct: 112 ITVEHTNYFDQTPNFLNIHLYS 177


>AW696480 weakly similar to SP|P03211|EBN1_ EBNA-1 nuclear protein. [strain
           B95-8  Human herpesvirus 4] {Epstein-barr virus},
           partial (5%)
          Length = 505

 Score = 25.4 bits (54), Expect = 9.8
 Identities = 18/53 (33%), Positives = 26/53 (48%)
 Frame = +2

Query: 44  HMFRVPVDHTFFFDTQHSSLQLHLYNKRRILGPTQLGWCMIPALDIGFLNLRD 96
           H FRV V +    D Q   LQLHL + R       L W  + +L + + +LR+
Sbjct: 131 HAFRVVVCNNRHLDLQQ*ELQLHLLSLR-------LTWHHLLSLRLTWHHLRE 268


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.323    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,884,438
Number of Sequences: 36976
Number of extensions: 68975
Number of successful extensions: 305
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of query: 156
length of database: 9,014,727
effective HSP length: 88
effective length of query: 68
effective length of database: 5,760,839
effective search space: 391737052
effective search space used: 391737052
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)