TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0304.11
         (1797 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-li...   201  2e-51
BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [impo...   163  6e-40
BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgari...   163  6e-40
BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At...   119  7e-40
BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - ...    98  7e-34
TC81386 similar to GP|10140689|gb|AAG13524.1 putative non-LTR re...   122  2e-27
BG647708 weakly similar to GP|13786450|gb| putative reverse tran...   105  1e-22
TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imp...    87  8e-17
BG586283 similar to GP|7267666|em RNA-directed DNA polymerase-li...    86  1e-16
BQ148771                                                               82  1e-15
BE248682 similar to GP|18568269|gb putative gag-pol polyprotein ...    70  1e-11
TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative ret...    48  4e-05
BG584442                                                               45  3e-04
BI270343                                                               42  0.003
TC80480 similar to GP|4056493|gb|AAC98059.1| chloroplast lumen c...    37  0.053
TC81623 similar to PIR|T01257|T01257 probable GT-1-like transcri...    36  0.12
AW736247 weakly similar to PIR|T14619|T146 reverse transcriptase...    35  0.34
TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarot...    34  0.45
TC82093                                                                34  0.45
TC78980 myb-related transcription factor [Medicago truncatula]         34  0.45

>BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
            {Arabidopsis thaliana}, partial (18%)
          Length = 789

 Score =  201 bits (511), Expect = 2e-51
 Identities = 101/251 (40%), Positives = 154/251 (61%)
 Frame = -3

Query: 931  NQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQ 990
            ++YR I+ CN  YKII+K++  R++  L  II+P+QSAF+  R I DN+LI H+I H L+
Sbjct: 775  SEYRTIAPCNTQYKIIAKILSKRMQPLLRSIISPSQSAFVPGRAISDNVLITHKILHYLR 596

Query: 991  HRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNG 1050
              G +    +A+K DM+KAYDR+ W FL + L   GF G W+S +M  V  VSY + +NG
Sbjct: 595  QSGAKKHVSMAVKTDMTKAYDRIAWNFLREVLTRLGFHGIWISWIMECVSTVSYSFLING 416

Query: 1051 YLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFF 1110
                + +P RGLRQGDPLSPYLF+L  +VLS +  QA  +G + G+K++ + P I HL F
Sbjct: 415  GPQGRVLPSRGLRQGDPLSPYLFILCTEVLSGLCQQALRKGTLPGVKVARNCPPINHLLF 236

Query: 1111 ADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQI 1170
            ADD++ F K+        + +++ + +AS + IN +KS+++ S      +  ++    +I
Sbjct: 235  ADDTMFFGKSNASSCAILLSIMDKYRAASGRCIN*TKSAITFSSKTSQAIIDRVKGELKI 56

Query: 1171 PTWEEPGHYLG 1181
                  G YLG
Sbjct: 55   AKEGGTGKYLG 23


>BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [imported] -
           Arabidopsis thaliana, partial (7%)
          Length = 687

 Score =  163 bits (412), Expect = 6e-40
 Identities = 87/213 (40%), Positives = 123/213 (56%)
 Frame = +2

Query: 773 WAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSEQVT 832
           W + GD+NT FFH+   QRR  N I +LKD TG+W +G+E V   +  +F  +F S   T
Sbjct: 5   WLKDGDKNTKFFHSKASQRRKVNEIKKLKDETGNWCKGEENVERLLITYFNNLFTSSNPT 184

Query: 833 QIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVV 892
            I+E    V   +  +      +  T+EE+    + M  +KAPGPDGL  LFF+ +W++V
Sbjct: 185 AIEETCEVVKGKLSHEHIVWCEKEFTEEEVLEAINQMHPVKAPGPDGLPALFFQKYWHIV 364

Query: 893 GPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVA 952
           G EV  +V    N S  +  +N+T + L+PK  +      YRPIS CN + KII+KVI  
Sbjct: 365 GKEVQQMVLQVLNNSMETEELNKTFIVLIPKGKNPNTPKDYRPISLCNVVMKIITKVIAN 544

Query: 953 RLKGELNDIITPNQSAFIKDRLIQDNILIAHEI 985
           R+K  L D+I   QSAF++ RLI DN LIA  +
Sbjct: 545 RVKQTLPDVIDVEQSAFVQGRLITDNALIAWSV 643


>BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgaris}, partial
            (69%)
          Length = 616

 Score =  163 bits (412), Expect = 6e-40
 Identities = 81/201 (40%), Positives = 121/201 (59%)
 Frame = +3

Query: 853  LMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPC 912
            L    T  E+K    SMDS KAPG DG N  FFK  WN++G  V   +  FF T  +   
Sbjct: 12   LCSEFTAVEVKNALFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKI 191

Query: 913  INETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKD 972
            IN T V L+PK  ++     +RPI+CC+ +YKIISK++ +R++G LN +++ NQSAF+K 
Sbjct: 192  INCTYVTLLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKG 371

Query: 973  RLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWV 1032
            R+I DNI+++HE+  +   +G   +    +K+D+ KAYD  EW F++  +L  GF   +V
Sbjct: 372  RVIFDNIILSHELVKSYSRKGISPR--CMVKIDLXKAYDSXEWPFIKHLMLELGFPYKFV 545

Query: 1033 SLVMNLVRGVSYKYKVNGYLS 1053
            + VM  +   SY +  NG L+
Sbjct: 546  NWVMAXLTTASYTFNXNGDLT 608


>BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
           [imported] - Arabidopsis thaliana, partial (16%)
          Length = 794

 Score =  119 bits (299), Expect(2) = 7e-40
 Identities = 58/171 (33%), Positives = 95/171 (54%)
 Frame = +3

Query: 746 EMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTG 805
           E++  ++++ + +  EE+FW  +SRL W + GDRNT FFHA T  RR +NRI  L D   
Sbjct: 78  ELSLLRSELNEEYHNEEIFWMQKSRLNWLRSGDRNTKFFHAVTKNRRAQNRILSLIDDDD 257

Query: 806 SWIEGQEGVMENITDHFQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVV 865
                +E +      HF+L++ SE V    E  + +P ++  + N +LM  ++ EE++  
Sbjct: 258 KEWFVEEDLGRLADSHFKLLYSSEDVGITLEDWNSIPAIVTEEQNAQLMAQISREEVREA 437

Query: 866 AHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINET 916
              ++  K PGPDG+N  FF+  W+ +G ++ S+   F  T  L   IN+T
Sbjct: 438 VFDINPHKCPGPDGMNVFFFQQFWDTMGDDLTSMAQEFLRTGKLEEGINKT 590



 Score = 64.7 bits (156), Expect(2) = 7e-40
 Identities = 35/64 (54%), Positives = 43/64 (66%)
 Frame = +1

Query: 920 LVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNI 979
           LVPK    +   ++RPIS CN  YKI+SKV+  RLK  L  IIT  Q+AF + +LI DNI
Sbjct: 601 LVPKKLEAKRLVEFRPISLCNVAYKIVSKVLSKRLKSVLPWIITETQAAFGRRQLISDNI 780

Query: 980 LIAH 983
           LIAH
Sbjct: 781 LIAH 792


>BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - Arabidopsis
           thaliana, partial (17%)
          Length = 677

 Score = 98.2 bits (243), Expect(2) = 7e-34
 Identities = 49/137 (35%), Positives = 75/137 (53%)
 Frame = +2

Query: 751 KAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEG 810
           K ++++ ++ EE +W  +SR  W   GD N  F+HA T QR  RNRI  L D  G+WI  
Sbjct: 11  KEKLQEAYKDEEDYWQQKSRNMWHISGDLNKKFYHALTKQRHARNRIVGLYDYDGNWITE 190

Query: 811 QEGVMENITDHFQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMD 870
           ++GV +   D+F+ +F+    T     L  +   I   +N +L+   T+EE+++    M 
Sbjct: 191 EQGVEKVAVDYFEDLFQRTTPTGFDGFLDEITSSITPQMNQRLLRLATEEEVRLALFIMH 370

Query: 871 SLKAPGPDGLNGLFFKT 887
             KAPGPDG+  L F T
Sbjct: 371 PEKAPGPDGMTTLLFST 421



 Score = 66.2 bits (160), Expect(2) = 7e-34
 Identities = 34/87 (39%), Positives = 51/87 (58%)
 Frame = +3

Query: 884 FFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLY 943
           FF+  W+++  ++  +V+SF  +  L   +N T + L+PK        + RPIS CN  Y
Sbjct: 411 FFQHSWHIIKMDLLKMVNSFLASGKLDTRLNTTNICLIPKKKRPTRMTELRPISLCNVGY 590

Query: 944 KIISKVIVARLKGELNDIITPNQSAFI 970
           KIISKV+  RLK  L  +I+  QSAF+
Sbjct: 591 KIISKVLCQRLKVCLPSLISETQSAFV 671


>TC81386 similar to GP|10140689|gb|AAG13524.1 putative non-LTR retroelement
           reverse transcriptase {Oryza sativa (japonica
           cultivar-group)}, partial (1%)
          Length = 798

 Score =  122 bits (305), Expect = 2e-27
 Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 8/257 (3%)
 Frame = -1

Query: 537 RRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNALAN 596
           +R+ LW +IS ++   +  WCC+GDFN  L  HE  G H  ++  +  F+ + D N L +
Sbjct: 798 KRRQLWSAISNIQTQHKLSWCCIGDFNTILGSHEHQGSHTPARLPMLDFQQWSDVNNLFH 619

Query: 597 IDIKGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLILDPV 656
           +  +G  +TW +  R    TR++LDR + N              L  + SDH P++ +  
Sbjct: 618 LPTRGSAFTWTNGRRGRNNTRKRLDRSIVNQLMIDNCESLSACTLTKLRSDHFPILFELQ 439

Query: 657 PKH-RSGRQFKYEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKV 715
            ++ +    FK+   W+ H DC  +++  W     G      L  K+K+ +  L  W K 
Sbjct: 438 TQNIQFSSSFKFMKMWSAHPDCINIIKQCWANQVVG-CPMFVLNQKLKNLKEVLKVWNKN 262

Query: 716 TF-------SRADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTR 768
           TF         A KE++ ++ ++ S+   D   +D  + AQ    +      EE+FW  +
Sbjct: 261 TFGNVHSQVDNAYKELDDIQVKIDSIGYSD-VLMDQEKAAQL--NLESALNIEEVFWHEK 91

Query: 769 SRLQWAQWGDRNTHFFH 785
           S++ W   GDRNT FFH
Sbjct: 90  SKVNWHCEGDRNTAFFH 40


>BG647708 weakly similar to GP|13786450|gb| putative reverse transcriptase
            {Oryza sativa}, partial (9%)
          Length = 708

 Score =  105 bits (263), Expect = 1e-22
 Identities = 53/115 (46%), Positives = 79/115 (68%)
 Frame = +1

Query: 1058 PQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVF 1117
            P++GLRQGDPLSPYLF+L  +VLS ++ +  N+ ++ GI+++ S P ITHL FADDSL+F
Sbjct: 4    PEKGLRQGDPLSPYLFILCANVLSGLLKREGNKQNLHGIQVARSDPKITHLLFADDSLLF 183

Query: 1118 AKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPT 1172
            A+A   EA   +Q+L+++ SAS Q +N  KS +S S+++P   K  +     I T
Sbjct: 184  ARANLTEAATIMQVLHSYQSASGQLVNFEKSEVSYSQNVPNQEKEMICQQIAIKT 348


>TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imported] -
            Arabidopsis thaliana, partial (6%)
          Length = 951

 Score = 86.7 bits (213), Expect = 8e-17
 Identities = 88/348 (25%), Positives = 144/348 (41%), Gaps = 13/348 (3%)
 Frame = +2

Query: 900  VHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELN 959
            V  F     L   IN T +AL+PK+ + +  N +RPIS    LYKI+ K++  RL+  + 
Sbjct: 11   VSEFHRNRKLFKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILGKLLANRLRVVIG 190

Query: 960  DIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLE 1019
             +I+  QSAF+K+R I + + +       L  R R  +          K +  + W    
Sbjct: 191  SVISDAQSAFVKNRQILEMVFL*Q---MRLWMRLRN*R----------KIFCCLRWILKR 331

Query: 1020 KALLAYG-----------FCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPL 1068
               L+ G           F   W   +   V   +    VNG  S   +  + L Q    
Sbjct: 332  LITLSIGLIWILF*VGMSFLVLWRKWIKECVSTATTSVLVNG--SPTNVLMKSLVQTQLF 505

Query: 1069 SPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHF 1128
            + Y F +V  V+                        ++HL FA+D+L+            
Sbjct: 506  TRYSFGVVNPVV------------------------VSHLQFANDTLLLETKNWANIRAL 613

Query: 1129 VQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGR 1188
               L  F + S  ++N  KS +      P+ L ++  ++      + P  YLG+P + G 
Sbjct: 614  RAALVIF*AMSGLKVNFHKSGLVCVNIAPSWL-SEAASVLSWKVGKVPFLYLGMP-IEGN 787

Query: 1189 SKTRALAW--IKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAM 1234
            S+ R   W  I  R+K ++ GW    L+  G+ VL+KSV+ S+  YA+
Sbjct: 788  SR-RLSFWEPIVNRIKARLTGWNSRFLSFGGRLVLLKSVLTSLSVYAL 928


>BG586283 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
           {Arabidopsis thaliana}, partial (7%)
          Length = 774

 Score = 85.9 bits (211), Expect = 1e-16
 Identities = 43/124 (34%), Positives = 61/124 (48%), Gaps = 10/124 (8%)
 Frame = +2

Query: 429 WNCRGVGASTTARELKEINSKQKPSILFLMETRARRNKIERLKFALHFSNFFCVDPIGTA 488
           WNC+G+G+  T R L+E  +K  P I+FLMET+ +   + ++     F+N F V P+G +
Sbjct: 218 WNCQGIGSDLTVRRLREFQTKDSPDIMFLMETKRKDEDVYKMYRGTEFTNHFTVPPVGLS 397

Query: 489 GGLALFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTF----------IYGEPLRQRR 538
           GGLAL W     VEIL S+ N I   +   +K     Y +          I G  L  R 
Sbjct: 398 GGLALSWKDNVQVEILASSANVIDTKVNYNDKSFFVSYIYWCSPT*A*S*ILGRTLHHRG 577

Query: 539 QALW 542
              W
Sbjct: 578 AKRW 589



 Score = 35.8 bits (81), Expect = 0.15
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 531 GEPLRQRRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDG 573
           G P  + R   WD +S +     G W   GDFN+ L   EK G
Sbjct: 519 GVPQPEHRAKFWDELSTIGAQRDGAWLLTGDFNDLLDNSEKVG 647


>BQ148771 
          Length = 680

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 7/165 (4%)
 Frame = -3

Query: 1205 IAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRG 1264
            +A WK   L+ A +  L KSVI+++P Y M  T  PK   +E+  L  +F W + + SR 
Sbjct: 573  LANWKANHLSLARRVTLAKSVIEAVPLYPMMTTIIPKACIEEIQKLQRKFVWGDTEVSRR 394

Query: 1265 IHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFPDSSF 1324
             H   W +++  K   G+G R   + N A + K  W I++  ++L  +VM+  Y    S 
Sbjct: 393  YHAVGWETMSKPKTIYGLGLRRLDVMNKACIMKLGWSIYSGSNSLCTEVMRGKYQRSESL 214

Query: 1325 LDA-TPKPGDSWMWRA------NQRQELLDRQRNLGCRGWSYHKL 1362
             +    KP DS +W+A         + L+D   N     W++ KL
Sbjct: 213  EEIFLEKPTDSSLWKALVKLWPEIERNLVDSNGN-----WNWEKL 94


>BE248682 similar to GP|18568269|gb putative gag-pol polyprotein {Zea mays},
            partial (1%)
          Length = 441

 Score = 69.7 bits (169), Expect = 1e-11
 Identities = 42/125 (33%), Positives = 62/125 (49%)
 Frame = +3

Query: 1059 QRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFA 1118
            QRGL+QGDPL+P+LF+LV + +S ++  A N+   QG  +      ++HL +ADD+L   
Sbjct: 21   QRGLKQGDPLAPFLFLLVAEGISGLMKNAVNRNLFQGFDVKRGGTRVSHLQYADDTLCIG 200

Query: 1119 KATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGH 1178
              T    +    LL  F  AS  ++N  KSS+    ++P                  P  
Sbjct: 201  MPTVDNLWTLKALLQGFEMASGLKVNFHKSSL-IGINVPRDFMEAACRFLNCREESIPFI 377

Query: 1179 YLGLP 1183
            YLGLP
Sbjct: 378  YLGLP 392


>TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative retroelement
            {Oryza sativa (japonica cultivar-group)}, partial (1%)
          Length = 625

 Score = 47.8 bits (112), Expect = 4e-05
 Identities = 25/68 (36%), Positives = 36/68 (52%)
 Frame = +2

Query: 1039 VRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKL 1098
            V    Y   VN       IP RGL+QGD LSPY+F++ ++ LS +I  AK +G   G  +
Sbjct: 107  VESNDYYVLVNNDAVDPIIPSRGLQQGDHLSPYIFIICVEGLSFLIPHAKERGDTHGTSI 286

Query: 1099 SPSTPCIT 1106
                P ++
Sbjct: 287  *RGAPPVS 310



 Score = 41.6 bits (96), Expect = 0.003
 Identities = 27/97 (27%), Positives = 46/97 (46%)
 Frame = +3

Query: 1108 LFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNI 1167
            L F    L   +  +  A     +L  +   S + I+  KS +  S+++P +LKT +T I
Sbjct: 279  LLFEGAPLRSLRVEEHHAQIMKNILILYEEDSGKAISLRKS*IYCSRNVPDILKTSITYI 458

Query: 1168 FQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEK 1204
              +        YLGLP++ GR +T   + IK  + +K
Sbjct: 459  LGVQFMLGTCKYLGLPSMIGRDRTTTFSSIKGGVWQK 569


>BG584442 
          Length = 775

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 29/102 (28%), Positives = 51/102 (49%), Gaps = 1/102 (0%)
 Frame = +1

Query: 1198 KERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWS 1257
            + +  +KI   +   L++   EV+IK  +QSI +Y M++         E++ ++  F W 
Sbjct: 364  RTKFDKKINF*RNKCLSKVM*EVMIKYALQSISSYVMSIFLLLNSQVDEIEKIMNTFSWV 543

Query: 1258 NNKKSR-GIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQ 1298
            +  ++R G+H      L   K  GGMGF +F   N+  + KQ
Sbjct: 544  HVGENRKGMHWMS*EKLFVHKNYGGMGFTDFTTFNIPMLGKQ 669


>BI270343 
          Length = 619

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 28/86 (32%), Positives = 39/86 (44%)
 Frame = +1

Query: 385 EEKRISRCNGGGGIPQRTFLSKFCYHGWGGGH*SAPNVSMRLISWNCRGVGASTTARELK 444
           + K+I+ C  G    +  F   F    W  G   A NV    ISWNCRG+G       +K
Sbjct: 379 QHKKINPCANGSFSAEELF---FIGRDWLPGLLGAMNV----ISWNCRGLGNVKAVPCIK 537

Query: 445 EINSKQKPSILFLMETRARRNKIERL 470
           ++    K  ++ L+ET    NKI  L
Sbjct: 538 DLIRVYKSDVVILIETLVESNKISDL 615


>TC80480 similar to GP|4056493|gb|AAC98059.1| chloroplast lumen common
           protein family {Arabidopsis thaliana}, partial (39%)
          Length = 1295

 Score = 37.4 bits (85), Expect = 0.053
 Identities = 21/48 (43%), Positives = 28/48 (57%), Gaps = 1/48 (2%)
 Frame = +3

Query: 281 KSRGPTPFYPTSCFELIP-KTSYSHHDPTPLEEPPQNHPKKPNPIKLL 327
           +S  P  F P S F+L P K+S S +DP    + PQN+P  PNP + L
Sbjct: 90  RSHPPPQFLPPSSFKLPPIKSSSSQNDPA--FQKPQNNPTPPNPFQTL 227


>TC81623 similar to PIR|T01257|T01257 probable GT-1-like transcription
           factor [imported] - Arabidopsis thaliana, partial (47%)
          Length = 847

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +1

Query: 363 SEEGEEPTNH*GEGQHRGNCKKEEKRISRCNGGGG 397
           SE+ EE  N   EG H+GN KK++K+     GGGG
Sbjct: 622 SEDEEELGNEESEGDHKGNIKKKKKKGKMIIGGGG 726


>AW736247 weakly similar to PIR|T14619|T146 reverse transcriptase - beet
           retrotransposon (fragment), partial (4%)
          Length = 305

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 17/54 (31%), Positives = 27/54 (49%), Gaps = 2/54 (3%)
 Frame = +1

Query: 858 TDEEIKVVAHSMDSLKA--PGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTL 909
           ++EE++      DS  +  PGPDG+N  F K +W ++  +   VV  F     L
Sbjct: 124 SEEEVRKAVWDCDSSHS*NPGPDGVNFTFVKEYWELIKVDFLRVVMEFHTNGKL 285


>TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarotenoid
            dioxygenase1 {Pisum sativum}, partial (43%)
          Length = 1865

 Score = 34.3 bits (77), Expect = 0.45
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -3

Query: 1270 WHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFP 1320
            WH L   K  GG+G R+  L N++ + K  WR+     +L  +V++ +Y P
Sbjct: 975  WHCLPRCK--GGLGVRDIRLVNVSLLAKWWWRLLQDQSSLWKEVLEDIYGP 829


>TC82093 
          Length = 569

 Score = 34.3 bits (77), Expect = 0.45
 Identities = 14/39 (35%), Positives = 22/39 (55%)
 Frame = -1

Query: 756 QLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGR 794
           +L  Q E+ W  +S+  W ++G RNT FFH   +  R +
Sbjct: 479 KLLSQNEMLWY*KSQ*NWVKYGSRNTWFFHNEDVN*RNQ 363


>TC78980 myb-related transcription factor [Medicago truncatula]
          Length = 1526

 Score = 34.3 bits (77), Expect = 0.45
 Identities = 44/229 (19%), Positives = 93/229 (40%), Gaps = 10/229 (4%)
 Frame = +2

Query: 562 FNETLYQHEKDGLHPQ--SQQSLNRFRSFVDSNALANIDIK----GCKYTWLSNPREGFV 615
           FN++ Y+H  +    +   ++    F     +++  + D +    G   +WLSN      
Sbjct: 557 FNDSKYEHILESFAEKLVKERPSPSFVMAASNSSYLHTDAQAPTPGLLPSWLSNSNNAAP 736

Query: 616 TREKLDRVLSNWSWRSLYPHALVVA----LPVVSSDHSPLILDPVPKHRSGRQFKYEAFW 671
            R     V       SL P  +        PV   D++PL+L  V  H +   +      
Sbjct: 737 VRPNSPSVTL-----SLSPSTVAAPPPWMQPVRGPDNAPLVLGNVAPHGAVLSYGESMVM 901

Query: 672 NEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKARL 731
           +E  DC K +E+  +     + +     ++V+       + +    SR  +++E+++A++
Sbjct: 902 SELVDCCKELEEVHHALAAHKKEAAWRLSRVE------LQLESEKASRRREKMEEIEAKI 1063

Query: 732 SSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRN 780
            ++  E    +D  E  +++ Q+  L R  E    T+ +    QW  ++
Sbjct: 1064KALREEQAVALDRIE-GEYREQLAGLRRDAE----TKEQKLTEQWAAKH 1195


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.331    0.143    0.482 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,550,364
Number of Sequences: 36976
Number of extensions: 1080360
Number of successful extensions: 6933
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 5014
Number of HSP's successfully gapped in prelim test: 240
Number of HSP's that attempted gapping in prelim test: 1609
Number of HSP's gapped (non-prelim): 5650
length of query: 1797
length of database: 9,014,727
effective HSP length: 110
effective length of query: 1687
effective length of database: 4,947,367
effective search space: 8346208129
effective search space used: 8346208129
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 65 (29.6 bits)