TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0301a.2
         (80 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC76497 homologue to SP|P06411|PSBB_TOBAC Photosystem II P680 ch...    28  0.64
BQ149694                                                               26  2.4
TC76502 weakly similar to GP|1311386|pdb|1CBG| Cyanogenic Beta-G...    25  5.4
CB891406 weakly similar to GP|10176783|dbj contains similarity t...    25  5.4
TC81437 similar to GP|10177523|dbj|BAB10918. gene_id:K1F13.7~sim...    25  7.1
TC83830 similar to GP|18146966|dbj|BAB82502. cig3 {Nicotiana tab...    25  7.1
CB892753 similar to GP|10172595|d multidrug resistance-associate...    24  9.3

>TC76497 homologue to SP|P06411|PSBB_TOBAC Photosystem II P680 chlorophyll A
            apoprotein (CP-47 protein). [Common tobacco] {Nicotiana
            tabacum}, complete
          Length = 4045

 Score = 28.1 bits (61), Expect = 0.64
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 45   LDNTKMK*IIENSRGR*GSR 64
            +   KM+*IIE SRGR*GSR
Sbjct: 3017 IQTKKMR*IIEYSRGR*GSR 3076


>BQ149694 
          Length = 610

 Score = 26.2 bits (56), Expect = 2.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 10  WLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLDNTKM 50
           +L+P  +LS G        E     S+MFL+ GTLL + K+
Sbjct: 543 FLKPMMNLSMGMKPQTMPKEPNDKKSSMFLNKGTLL*DNKL 421


>TC76502 weakly similar to GP|1311386|pdb|1CBG| Cyanogenic Beta-Glucosidase
            Mol_id: 1; Molecule: Cyanogenic Beta-Glucosidase; Chain:
            Null; Ec: 3.2., partial (32%)
          Length = 1738

 Score = 25.0 bits (53), Expect = 5.4
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +1

Query: 49   KMK*IIENSRGR*GSR 64
            KM+*IIE SR R*GSR
Sbjct: 1627 KMR*IIEYSRXR*GSR 1674


>CB891406 weakly similar to GP|10176783|dbj contains similarity to protein
           kinase~gene_id:MIK19.26 {Arabidopsis thaliana}, partial
           (5%)
          Length = 826

 Score = 25.0 bits (53), Expect = 5.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 3   LLIHRQRWLRPNNSLSNGFFRSN 25
           L++HRQ    P N LS   +RSN
Sbjct: 437 LVLHRQTPNNPRNKLSESVWRSN 505


>TC81437 similar to GP|10177523|dbj|BAB10918. gene_id:K1F13.7~similar to
           unknown protein~sp|P55606 {Arabidopsis thaliana},
           partial (47%)
          Length = 1426

 Score = 24.6 bits (52), Expect = 7.1
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = +1

Query: 2   LLLIHRQRWLRPNNSLSNGFFRSN-TLSESYQYLSNMFLSNGTL-------LDNTKMK*I 53
           +LLIH+Q +L+ +       FR N  L     +L+N  + N  L         N K+K*I
Sbjct: 268 ILLIHQQPFLKLSKMFMRVLFRKNQALGPLSMHLANSQMQNQKLWRKHS*YCSNLKIK*I 447

Query: 54  IE 55
            E
Sbjct: 448 KE 453


>TC83830 similar to GP|18146966|dbj|BAB82502. cig3 {Nicotiana tabacum},
           partial (4%)
          Length = 790

 Score = 24.6 bits (52), Expect = 7.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 2   LLLIHRQRWLRPNNSLSNGFFRSNTLSESYQ 32
           LL  H Q+ L+P   L+NG     +L E +Q
Sbjct: 429 LLKAHHQQQLQPPQPLTNGNQHFTSLPEQFQ 521


>CB892753 similar to GP|10172595|d multidrug resistance-associated protein
           (MRP); ABC-transoprter {Arabidopsis thaliana}, partial
           (14%)
          Length = 783

 Score = 24.3 bits (51), Expect = 9.3
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 13  PNNSLSNGFFRSNTLSESYQYLS-NMFLSNGTL 44
           PN+ +S  FF+ +  S ++ YLS  MF  N  L
Sbjct: 493 PNDKISKSFFKEHA-SSTFSYLSLTMFSPNNIL 398


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.350    0.154    0.482 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,093,525
Number of Sequences: 36976
Number of extensions: 20324
Number of successful extensions: 296
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of query: 80
length of database: 9,014,727
effective HSP length: 56
effective length of query: 24
effective length of database: 6,944,071
effective search space: 166657704
effective search space used: 166657704
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 51 (24.3 bits)