TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0290.7
         (47 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC79189 similar to GP|21593647|gb|AAM65614.1 replication protein...    30  0.15
BG644922 similar to GP|8778232|gb F10B6.19 {Arabidopsis thaliana...    27  2.2
BQ079323 similar to PIR|F81738|F817 hypothetical protein TC0114 ...    25  4.9
TC77397 homologue to PIR|S37159|S37159 NADPH--ferrihemoprotein r...    25  4.9
TC82242 weakly similar to GP|21592781|gb|AAM64730.1 putative mem...    25  6.4
TC80573 similar to GP|9759187|dbj|BAB09724.1 importin beta {Arab...    25  8.3

>TC79189 similar to GP|21593647|gb|AAM65614.1 replication protein A1-like
           {Arabidopsis thaliana}, partial (79%)
          Length = 1251

 Score = 30.4 bits (67), Expect = 0.15
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 4   INPDYGFNPTG-WEVQELGFKSKPNVWAYFSVKS 36
           ++ D  FNP   ++ QE  FKS PN W+Y S K+
Sbjct: 913 VHSDM*FNPASCFDSQESRFKSHPN*WSYESAKA 1014


>BG644922 similar to GP|8778232|gb F10B6.19 {Arabidopsis thaliana}, partial
           (20%)
          Length = 788

 Score = 26.6 bits (57), Expect = 2.2
 Identities = 10/30 (33%), Positives = 18/30 (59%), Gaps = 2/30 (6%)
 Frame = -1

Query: 5   NPDYGFNPTGWEVQEL--GFKSKPNVWAYF 32
           N ++ F P  W+VQE+   F  + ++W Y+
Sbjct: 680 NHNHIFEPLSWQVQEIFCQFHQRRHIWFYY 591


>BQ079323 similar to PIR|F81738|F817 hypothetical protein TC0114 [imported] -
           Chlamydia muridarum (strain Nigg), partial (57%)
          Length = 298

 Score = 25.4 bits (54), Expect = 4.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 8   YGFNPTGWEVQELGFKSKPNVWAYFSV 34
           YG +P   EV+ELG K +  VW+  SV
Sbjct: 139 YGCSPFK-EVRELGLKRRETVWSLSSV 216


>TC77397 homologue to PIR|S37159|S37159 NADPH--ferrihemoprotein reductase (EC
            1.6.2.4) - spring vetch, complete
          Length = 2519

 Score = 25.4 bits (54), Expect = 4.9
 Identities = 7/22 (31%), Positives = 15/22 (67%)
 Frame = -3

Query: 15   WEVQELGFKSKPNVWAYFSVKS 36
            WE  +   + +P++W++F+V S
Sbjct: 2169 WENHQTSLR*RPSIWSFFTVAS 2104


>TC82242 weakly similar to GP|21592781|gb|AAM64730.1 putative membrane
          protein {Arabidopsis thaliana}, partial (9%)
          Length = 580

 Score = 25.0 bits (53), Expect = 6.4
 Identities = 9/17 (52%), Positives = 11/17 (63%)
 Frame = -2

Query: 19 ELGFKSKPNVWAYFSVK 35
          +LGFK K N+W    VK
Sbjct: 90 DLGFKRKANIWIVLKVK 40


>TC80573 similar to GP|9759187|dbj|BAB09724.1 importin beta {Arabidopsis
           thaliana}, partial (27%)
          Length = 1220

 Score = 24.6 bits (52), Expect = 8.3
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -1

Query: 23  KSKPNVWAYFS 33
           KSKP+VWAY S
Sbjct: 359 KSKPDVWAYIS 327


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.318    0.142    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,740,457
Number of Sequences: 36976
Number of extensions: 16888
Number of successful extensions: 74
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of query: 47
length of database: 9,014,727
effective HSP length: 23
effective length of query: 24
effective length of database: 8,164,279
effective search space: 195942696
effective search space used: 195942696
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)