BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0288.7
(1771 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-li... 198 1e-50
BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At... 104 5e-33
BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [impo... 140 6e-33
BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - ... 89 1e-30
BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgari... 132 1e-30
TC81386 similar to GP|10140689|gb|AAG13524.1 putative non-LTR re... 122 1e-27
TC83226 weakly similar to PIR|G86419|G86419 probable reverse tra... 104 3e-22
TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imp... 101 3e-21
BG647708 weakly similar to GP|13786450|gb| putative reverse tran... 99 2e-20
BG586283 similar to GP|7267666|em RNA-directed DNA polymerase-li... 85 4e-20
BG587113 weakly similar to PIR|A84888|A8 hypothetical protein At... 81 3e-15
BG586862 79 2e-14
TC93101 74 5e-13
BQ148771 65 2e-10
BG585866 65 3e-10
BE248682 similar to GP|18568269|gb putative gag-pol polyprotein ... 65 3e-10
BG585499 62 2e-09
BG584442 59 2e-08
TC81772 46 2e-07
TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative ret... 51 2e-07
>BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
{Arabidopsis thaliana}, partial (18%)
Length = 789
Score = 198 bits (504), Expect = 1e-50
Identities = 98/252 (38%), Positives = 148/252 (57%)
Frame = -3
Query: 907 VVQFRPISCCNYILKVISRIMVTRLKDDLNLLISPNQSAFVGGRLIQDNITVSQEAFHLL 966
V ++R I+ CN K+I++I+ R++ L +ISP+QSAFV GR I DN+ ++ + H L
Sbjct: 778 VSEYRTIAPCNTQYKIIAKILSKRMQPLLRSIISPSQSAFVPGRAISDNVLITHKILHYL 599
Query: 967 QRGESRMKDYMAIKVDMSKTYDRLEWTFLEKTLLAYGFHPIWTARVLTLVKGATYKLKVN 1026
++ ++ MA+K DM+K YDR+ W FL + L GFH IW + ++ V +Y +N
Sbjct: 598 RQSGAKKHVSMAVKTDMTKAYDRIAWNFLREVLTRLGFHGIWISWIMECVSTVSYSFLIN 419
Query: 1027 GFLSSTLTPGRGLRQGDPLSPYLFVLATDVLSFMLTQAQRDGEISGFRFTPHSPPLTHLF 1086
G + P RGLRQGDPLSPYLF+L T+VLS + QA R G + G + + PP+ HL
Sbjct: 418 GGPQGRVLPSRGLRQGDPLSPYLFILCTEVLSGLCQQALRKGTLPGVKVARNCPPINHLL 239
Query: 1087 FADDSLLFAEATVKEATSIIHILNLYNRASGQRINVAKSGLIFGRSASNRVKRDISNLLH 1146
FADD++ F ++ ++ I++ Y ASG+ IN KS + F S + + L
Sbjct: 238 FADDTMFFGKSNASSCAILLSIMDKYRAASGRCIN*TKSAITFSSKTSQAIIDRVKGELK 59
Query: 1147 MAIWDSPGQYLG 1158
+A G+YLG
Sbjct: 58 IAKEGGTGKYLG 23
>BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
[imported] - Arabidopsis thaliana, partial (16%)
Length = 794
Score = 104 bits (260), Expect(2) = 5e-33
Identities = 64/185 (34%), Positives = 97/185 (51%), Gaps = 3/185 (1%)
Frame = +3
Query: 712 QDRPNHLVDWNEVKNIKL---EIDTLWRQEELFWGQRSRVKWA*YGDKNSKFFHASTLKR 768
QDR + +N+ + + L E++ + EE+FW Q+SR+ W GD+N+KFFHA T R
Sbjct: 36 QDRRGNTKLFNKGEELSLLRSELNEEYHNEEIFWMQKSRLNWLRSGDRNTKFFHAVTKNR 215
Query: 769 RNRNRIDRVCDAQGTWKEGQTEVMHAFVSHYEEIFQSEGVNQIEDCLRGFPRKVTAELNN 828
R +NRI + D + ++ SH++ ++ SE V + P VT E N
Sbjct: 216 RAQNRILSLIDDDDKEWFVEEDLGRLADSHFKLLYSSEDVGITLEDWNSIPAIVTEEQNA 395
Query: 829 RLIMPASDAEIAEAVNLLGGLKAPGPDGLNGLFFKNHWATIQDSVCYAIKEFFST*NL*A 888
+L+ S E+ EAV + K PGPDG+N FF+ W T+ D + +EF T L
Sbjct: 396 QLMAQISREEVREAVFDINPHKCPGPDGMNVFFFQQFWDTMGDDLTSMAQEFLRTGKLEE 575
Query: 889 EINET 893
IN+T
Sbjct: 576 GINKT 590
Score = 56.6 bits (135), Expect(2) = 5e-33
Identities = 30/75 (40%), Positives = 45/75 (60%)
Frame = +1
Query: 885 NL*AEINETIVALVPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKDDLNLLISPNQS 944
NL E + LVPK + +V+FRPIS CN K++S+++ RLK L +I+ Q+
Sbjct: 565 NLKRESTKQTSGLVPKKLEAKRLVEFRPISLCNVAYKIVSKVLSKRLKSVLPWIITETQA 744
Query: 945 AFVGGRLIQDNITVS 959
AF +LI DNI ++
Sbjct: 745 AFGRRQLISDNILIA 789
>BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [imported] -
Arabidopsis thaliana, partial (7%)
Length = 687
Score = 140 bits (352), Expect = 6e-33
Identities = 71/210 (33%), Positives = 116/210 (54%)
Frame = +2
Query: 750 WA*YGDKNSKFFHASTLKRRNRNRIDRVCDAQGTWKEGQTEVMHAFVSHYEEIFQSEGVN 809
W GDKN+KFFH+ +RR N I ++ D G W +G+ V ++++ +F S
Sbjct: 5 WLKDGDKNTKFFHSKASQRRKVNEIKKLKDETGNWCKGEENVERLLITYFNNLFTSSNPT 184
Query: 810 QIEDCLRGFPRKVTAELNNRLIMPASDAEIAEAVNLLGGLKAPGPDGLNGLFFKNHWATI 869
IE+ K++ E ++ E+ EA+N + +KAPGPDGL LFF+ +W +
Sbjct: 185 AIEETCEVVKGKLSHEHIVWCEKEFTEEEVLEAINQMHPVKAPGPDGLPALFFQKYWHIV 364
Query: 870 QDSVCYAIKEFFST*NL*AEINETIVALVPKVDSPESVVQFRPISCCNYILKVISRIMVT 929
V + + + E+N+T + L+PK +P + +RPIS CN ++K+I++++
Sbjct: 365 GKEVQQMVLQVLNNSMETEELNKTFIVLIPKGKNPNTPKDYRPISLCNVVMKIITKVIAN 544
Query: 930 RLKDDLNLLISPNQSAFVGGRLIQDNITVS 959
R+K L +I QSAFV GRLI DN ++
Sbjct: 545 RVKQTLPDVIDVEQSAFVQGRLITDNALIA 634
>BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - Arabidopsis
thaliana, partial (17%)
Length = 677
Score = 88.6 bits (218), Expect(2) = 1e-30
Identities = 46/136 (33%), Positives = 73/136 (52%)
Frame = +2
Query: 727 IKLEIDTLWRQEELFWGQRSRVKWA*YGDKNSKFFHASTLKRRNRNRIDRVCDAQGTWKE 786
+K ++ ++ EE +W Q+SR W GD N KF+HA T +R RNRI + D G W
Sbjct: 8 LKEKLQEAYKDEEDYWQQKSRNMWHISGDLNKKFYHALTKQRHARNRIVGLYDYDGNWIT 187
Query: 787 GQTEVMHAFVSHYEEIFQSEGVNQIEDCLRGFPRKVTAELNNRLIMPASDAEIAEAVNLL 846
+ V V ++E++FQ + L +T ++N RL+ A++ E+ A+ ++
Sbjct: 188 EEQGVEKVAVDYFEDLFQRTTPTGFDGFLDEITSSITPQMNQRLLRLATEEEVRLALFIM 367
Query: 847 GGLKAPGPDGLNGLFF 862
KAPGPDG+ L F
Sbjct: 368 HPEKAPGPDGMTTLLF 415
Score = 65.1 bits (157), Expect(2) = 1e-30
Identities = 34/89 (38%), Positives = 50/89 (55%)
Frame = +3
Query: 861 FFKNHWATIQDSVCYAIKEFFST*NL*AEINETIVALVPKVDSPESVVQFRPISCCNYIL 920
FF++ W I+ + + F ++ L +N T + L+PK P + + RPIS CN
Sbjct: 411 FFQHSWHIIKMDLLKMVNSFLASGKLDTRLNTTNICLIPKKKRPTRMTELRPISLCNVGY 590
Query: 921 KVISRIMVTRLKDDLNLLISPNQSAFVGG 949
K+IS+++ RLK L LIS QSAFV G
Sbjct: 591 KIISKVLCQRLKVCLPSLISETQSAFVHG 677
>BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgaris}, partial
(69%)
Length = 616
Score = 132 bits (332), Expect = 1e-30
Identities = 78/193 (40%), Positives = 109/193 (56%)
Frame = +3
Query: 838 EIAEAVNLLGGLKAPGPDGLNGLFFKNHWATIQDSVCYAIKEFFST*NL*AEINETIVAL 897
E+ A+ + KAPG DG N FFK W I DSV AI +FF T + IN T V L
Sbjct: 36 EVKNALFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKIINCTYVTL 215
Query: 898 VPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKDDLNLLISPNQSAFVGGRLIQDNIT 957
+PK + SV FRPI+CC+ I K+IS+I+ +R++ LN ++S NQSAFV GR+I DNI
Sbjct: 216 LPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNII 395
Query: 958 VSQEAFHLLQRGESRMKDYMAIKVDMSKTYDRLEWTFLEKTLLAYGFHPIWTARVLTLVK 1017
+S E R + +K+D+ K YD EW F++ +L GF + V+ +
Sbjct: 396 LSHELVKSYSR--KGISPRCMVKIDLXKAYDSXEWPFIKHLMLELGFPYKFVNWVMAXLT 569
Query: 1018 GATYKLKVNGFLS 1030
A+Y NG L+
Sbjct: 570 TASYTFNXNGDLT 608
>TC81386 similar to GP|10140689|gb|AAG13524.1 putative non-LTR retroelement
reverse transcriptase {Oryza sativa (japonica
cultivar-group)}, partial (1%)
Length = 798
Score = 122 bits (306), Expect = 1e-27
Identities = 71/266 (26%), Positives = 128/266 (47%), Gaps = 5/266 (1%)
Frame = -1
Query: 514 RRRFLWPQITALRFRDNTPWCLLGDFNEILFAHEKEGMRPQPPSVLQRFREFVHNSGLMD 573
+RR LW I+ ++ + WC +GDFN IL +HE +G + F+++ + L
Sbjct: 798 KRRQLWSAISNIQTQHKLSWCCIGDFNTILGSHEHQGSHTPARLPMLDFQQWSDVNNLFH 619
Query: 574 VDLKGSRFTWHSNPRDGFVTREKIDRVLTNWSWRNIFPNASAMAYPQISSDHSPILLDLS 633
+ +GS FTW + R TR+++DR + N + + SA ++ SDH PIL +L
Sbjct: 618 LPTRGSAFTWTNGRRGRNNTRKRLDRSIVNQLMIDNCESLSACTLTKLRSDHFPILFELQ 439
Query: 634 PPTWS-KTPFKYEVFWDEHEQCSEVVAEGWLKPLHNEDCWKDLENRIKSSKRTIWSWQRK 692
+ FK+ W H C ++ + W + + L ++K+ K + W +
Sbjct: 438 TQNIQFSSSFKFMKMWSAHPDCINIIKQCWANQVVGCPMFV-LNQKLKNLKEVLKVWNKN 262
Query: 693 TFKVAEKEIGRLKQELQSKQDRPNHL----VDWNEVKNIKLEIDTLWRQEELFWGQRSRV 748
TF ++ +EL Q + + + V ++ K +L +++ EE+FW ++S+V
Sbjct: 261 TFGNVHSQVDNAYKELDDIQVKIDSIGYSDVLMDQEKAAQLNLESALNIEEVFWHEKSKV 82
Query: 749 KWA*YGDKNSKFFHASTLKRRNRNRI 774
W GD+N+ FFH +R + I
Sbjct: 81 NWHCEGDRNTAFFHRVAKIKRTSSLI 4
>TC83226 weakly similar to PIR|G86419|G86419 probable reverse transcriptase
100033-105622 [imported] - Arabidopsis thaliana, partial
(2%)
Length = 885
Score = 104 bits (260), Expect = 3e-22
Identities = 83/306 (27%), Positives = 148/306 (48%), Gaps = 11/306 (3%)
Frame = +3
Query: 1407 WPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPE-LLWRTIWKSQLPQKVKVFLWKA 1465
W H P G Y+V SG+ R+ + Q +++ S + E L+W+ IW + KV LW+
Sbjct: 6 WMHNPTGIYSVKSGYNTLRT--WQTQQINNTSTSSDETLIWKKIWSLHTIPRHKVLLWRI 179
Query: 1466 SHNSLAVKYNLWRKRILPSGQCPVCCEAQETVEHMFFVCPWTRAVWFGSSL----QWVVS 1521
++SL V+ +L ++ I CP C ET+ H+F CP ++ VWFGS+L + +
Sbjct: 180 LNDSLPVRSSLRKRGIQCYPLCPRCHSKTETITHLFMSCPLSKRVWFGSNLCINFDNLPN 359
Query: 1522 PQGLGSFDVWLLQKITALQTISLDFNKDFSTLACILWSIWRGRNKAVFNAIRPDPTFAIQ 1581
P + +L K + +A I++++W RN +V IQ
Sbjct: 360 PNFIN*LYEAIL*KDECITI----------*IAAIIYNLWHARNLSVLEDQTILEMDIIQ 509
Query: 1582 QVASTLS----AIDLAKPVTEKVISD-GNQNTNQRPTAWRPPFGNLLKINVDASWVSSVP 1636
+ ++ +S A A P + D +Q+ + T W+ P L+K+N DA+ + +
Sbjct: 510 RASNCISDYKQANTQAPPSMARTGYDPRSQHRPAKNTKWKRPNLGLVKVNTDAN-LQNHG 686
Query: 1637 QSAVGVLIRDKFSTLLAGSHAKVYSSS-PLTAEASAIREGLSLAHNLGCPEIIMESDSKI 1695
+ +G++IRD+ ++A S + + L AEA A+ G+ A + G ++ E D++
Sbjct: 687 KWGLGIIIRDEVGLVMAASTWETDGNDRALEAEAYALLTGMRFAKDCGFXKVXFEGDNEK 866
Query: 1696 LIDACK 1701
L+ K
Sbjct: 867 LMKMVK 884
>TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imported] -
Arabidopsis thaliana, partial (6%)
Length = 951
Score = 101 bits (251), Expect = 3e-21
Identities = 87/346 (25%), Positives = 153/346 (44%), Gaps = 11/346 (3%)
Frame = +2
Query: 877 IKEFFST*NL*AEINETIVALVPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKDDLN 936
+ EF L IN T +AL+PKVD+P+ + FRPIS + K++ +++ RL+ +
Sbjct: 11 VSEFHRNRKLFKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILGKLLANRLRVVIG 190
Query: 937 LLISPNQSAFVGGRLIQDNITVSQEAFHLLQRGESRMKDYMAIKVDMSKTYDRLEWTFLE 996
+IS QSAFV R I + + + Q M+ +M ++ + K + L W
Sbjct: 191 SVISDAQSAFVKNRQILEMVFL*Q------------MRLWMRLR-N*RKIFCCLRWILKR 331
Query: 997 KTLLAYG-----------FHPIWTARVLTLVKGATYKLKVNGFLSSTLTPGRGLRQGDPL 1045
L+ G F +W + V AT + VNG ++ L + L Q
Sbjct: 332 LITLSIGLIWILF*VGMSFLVLWRKWIKECVSTATTSVLVNGSPTNVLM--KSLVQTQLF 505
Query: 1046 SPYLFVLATDVLSFMLTQAQRDGEISGFRFTPHSPPLTHLFFADDSLLFAEATVKEATSI 1105
+ Y F + V+ ++HL FA+D+LL ++
Sbjct: 506 TRYSFGVVNPVV------------------------VSHLQFANDTLLLETKNWANIRAL 613
Query: 1106 IHILNLYNRASGQRINVAKSGLIFGRSASNRVKRDISNLLHMAIWDSPGQYLGLPAIWGR 1165
L ++ SG ++N KSGL+ A + + + +++L + P YLG+P
Sbjct: 614 RAALVIF*AMSGLKVNFHKSGLVCVNIAPSWLS-EAASVLSWKVGKVPFLYLGMPIEGNS 790
Query: 1166 NKCHSLAWIEERVKEKLEGWKETLLNQAGKEVLIKAIIQAIPLYAM 1211
+ I R+K +L GW L+ G+ VL+K+++ ++ +YA+
Sbjct: 791 RRLSFWEPIVNRIKARLTGWNSRFLSFGGRLVLLKSVLTSLSVYAL 928
>BG647708 weakly similar to GP|13786450|gb| putative reverse transcriptase
{Oryza sativa}, partial (9%)
Length = 708
Score = 98.6 bits (244), Expect = 2e-20
Identities = 49/107 (45%), Positives = 68/107 (62%)
Frame = +1
Query: 1035 PGRGLRQGDPLSPYLFVLATDVLSFMLTQAQRDGEISGFRFTPHSPPLTHLFFADDSLLF 1094
P +GLRQGDPLSPYLF+L +VLS +L + + G + P +THL FADDSLLF
Sbjct: 4 PEKGLRQGDPLSPYLFILCANVLSGLLKREGNKQNLHGIQVARSDPKITHLLFADDSLLF 183
Query: 1095 AEATVKEATSIIHILNLYNRASGQRINVAKSGLIFGRSASNRVKRDI 1141
A A + EA +I+ +L+ Y ASGQ +N KS + + ++ N+ K I
Sbjct: 184 ARANLTEAATIMQVLHSYQSASGQLVNFEKSEVSYSQNVPNQEKEMI 324
Score = 38.5 bits (88), Expect(2) = 2e-04
Identities = 24/93 (25%), Positives = 38/93 (40%)
Frame = +3
Query: 1344 NWLSSGEALIQPHNAPDMKVSELISPHGEGWNSALVRSLFQPELALKVLQTPVSKLNQTD 1403
+W+ S H + + V ELI + WN L+ F A ++++ P+S D
Sbjct: 345 DWIPSKREFKLNHVSGSLSVDELIDYDTKQWNRDLIFHSFNNYAAHQIIKIPLSMRQPED 524
Query: 1404 VLFWPHTPKGDYTVSSGFEIARSNSIKPQALSS 1436
+ W G Y+V S + QA SS
Sbjct: 525 KIIWHWEKDGIYSVRSAHHALCDENFSNQAESS 623
Score = 25.8 bits (55), Expect(2) = 2e-04
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = +2
Query: 1444 LLWRTIWKSQLPQKVKVFLWK 1464
++W+ IW + + V+ FLW+
Sbjct: 638 VIWKAIWNTPASRSVQNFLWR 700
>BG586283 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
{Arabidopsis thaliana}, partial (7%)
Length = 774
Score = 84.7 bits (208), Expect(2) = 4e-20
Identities = 48/121 (39%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Frame = +2
Query: 380 STSHYY----QQG*GGGPNHAPPITMMILSWNCRGVAATPTGRELRTLCSKNKPTIVFLM 435
ST+H Y ++ G + + +++ + WNC+G+ + T R LR +K+ P I+FLM
Sbjct: 128 STAHKYHTSFEEERIGFSSRSKSSSLVNMCWNCQGIGSDLTVRRLREFQTKDSPDIMFLM 307
Query: 436 ETRSKKENLEVIRRSLGFDYLFTVNPRGLSGGLALFWKREVHIQILHSSQNYIHTSIFAN 495
ET+ K E++ + R F FTV P GLSGGLAL WK V ++IL SS N I T + N
Sbjct: 308 ETKRKDEDVYKMYRGTEFTNHFTVPPVGLSGGLALSWKDNVQVEILASSANVIDTKVNYN 487
Query: 496 N 496
+
Sbjct: 488 D 490
Score = 33.5 bits (75), Expect(2) = 4e-20
Identities = 14/43 (32%), Positives = 23/43 (52%)
Frame = +3
Query: 508 GDPSSQRRRFLWPQITALRFRDNTPWCLLGDFNEILFAHEKEG 550
G P + R W +++ + + + W L GDFN++L EK G
Sbjct: 519 GVPQPEHRAKFWDELSTIGAQRDGAWLLTGDFNDLLDNSEKVG 647
>BG587113 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
[imported] - Arabidopsis thaliana, partial (10%)
Length = 767
Score = 81.3 bits (199), Expect = 3e-15
Identities = 60/228 (26%), Positives = 95/228 (41%), Gaps = 13/228 (5%)
Frame = -3
Query: 1302 LNASLGRNPSWMWRSLLAGRDFISRYIRWAVGGGLLIEVWGDNWLSSGEALIQPHNAPDM 1361
LNA LG S+ WRS+ + + I + + +G G +W + N
Sbjct: 762 LNAPLGSWASYAWRSIHSAQHLIKQGAKVIIGNGENTNIWEREMAWKLTCVTNHPNKHSS 583
Query: 1362 KVSELISPHG-EGW----------NSALVRSLFQPELALKVLQTPVSKLNQTDVLFWPHT 1410
+ + +G EG N+ L+ S+F K+L D W ++
Sbjct: 582 RAY*APTLYGYEGCRSDDPMRRERNANLINSIFPEGTRRKILSIHPQGPIGEDSYSWEYS 403
Query: 1411 PKGDYTVSSGFEIARSNSIKPQALSSRSHNIPEL--LWRTIWKSQLPQKVKVFLWKASHN 1468
G Y+V SG+ + +I A + + P L L++ +WK KV+ FLW+ N
Sbjct: 402 KSGHYSVKSGYYV--QTNIIAAANQRGTVDQPSLDDLYQRVWKYNTSPKVRHFLWRCISN 229
Query: 1469 SLAVKYNLWRKRILPSGQCPVCCEAQETVEHMFFVCPWTRAVWFGSSL 1516
SL N+ + I G C C ETV H+ F CP+ R +W S +
Sbjct: 228 SLPTAANMRSRHISKDGSCSRCGMESETVNHILFQCPYARLIWATSPI 85
>BG586862
Length = 804
Score = 78.6 bits (192), Expect = 2e-14
Identities = 67/250 (26%), Positives = 108/250 (42%), Gaps = 1/250 (0%)
Frame = -1
Query: 1449 IWKSQLPQKVKVFLWKASHNSLAVKYNLWRKRILPSGQCPVCCEAQETVEHMFFVCPWTR 1508
+W + + K FLW+ HN+L VK L ++ I S CP C ETV+H+F C T+
Sbjct: 654 VWGIKTIPRHKSFLWRLLHNALPVKDELHKRGIRCSLLCPRCESKIETVQHLFLNCEVTQ 475
Query: 1509 AVWFGSSLQWVVSPQGLGSFDVWLLQKITALQTISLDFNKDFSTLACILWSIWRGRNKAV 1568
WFGS L G+ F W+ I + + L +L+SIW RN+ V
Sbjct: 474 KEWFGSQLGINFHSSGVLHFHDWITNFILK------NDEETIIALTALLYSIWHARNQKV 313
Query: 1569 FNAIRPDPTFAIQQVASTLSAIDLAKPVTEKVISDGNQNTNQRPTAWRPPFGNLLKINVD 1628
F I IQ+ +S+L + +A+ +SD +N P+
Sbjct: 312 FENIDVPGDVVIQRASSSLHSFKMAQ------VSDSVLPSNAIPSY-------------- 193
Query: 1629 ASWVSSVPQSAVGVLIRD-KFSTLLAGSHAKVYSSSPLTAEASAIREGLSLAHNLGCPEI 1687
+ W +GV+ R+ + + +G+ + TAEA I + + A + G +
Sbjct: 192 SLW-------GIGVVARNCEGLAMASGTWLRHGIPCATTAEAWGIYQAMVFAGDCGFSKF 34
Query: 1688 IMESDSKILI 1697
ESD+ L+
Sbjct: 33 EFESDNGNLL 4
>TC93101
Length = 675
Score = 73.9 bits (180), Expect = 5e-13
Identities = 66/235 (28%), Positives = 100/235 (42%), Gaps = 18/235 (7%)
Frame = -1
Query: 1467 HNSLAVKYNLWRKRILPSGQCPVCCEAQETVEHMFFVCPWTRAVWFGSSLQWVVSPQGLG 1526
H +L V+ L ++ + CP C ET H+F C T+ VWFGS L
Sbjct: 672 HTTLPVRXELNKRGVNCPPLCPRCYFNLETTNHIFMSCERTQRVWFGSQLSIRFPDNSTI 493
Query: 1527 SFDVWLLQKITALQTISLDFNKDFSTLACILWSIWRGRNKAVFNAIRPDPTFAIQQVAST 1586
+F WL IS + ++ I +SIW RNKA+F IQ ++
Sbjct: 492 NFSDWL------FDAISNQTEEIIIKISAITYSIWHARNKAIFENQFVSEDTIIQ*AQNS 331
Query: 1587 LSAIDLA--KPVTEKVI-----SDGNQNTNQR----PTAWRPPFGNLLKINVDASWVSSV 1635
+ A + A KP ++ + N NT +R + W+ P N+LK N DA+ +
Sbjct: 330 ILAYEQATIKPQNPNIVLSSLSATSNTNTTRRRSNVRSRWQKPLNNILKANCDAN-LQVQ 154
Query: 1636 PQSAVGVLIRDKFSTLLAGSHAKVYSS-------SPLTAEASAIREGLSLAHNLG 1683
+ +G +IR+ A AKV ++ TAE AI + LA + G
Sbjct: 153 GRWGLGCIIRN------ADGEAKVTATWCINGFDCAATAETYAILAAMYLAKDYG 7
>BQ148771
Length = 680
Score = 65.1 bits (157), Expect = 2e-10
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 1/143 (0%)
Frame = -3
Query: 1177 RVKEKLEGWKETLLNQAGKEVLIKAIIQAIPLYAMAMVHFPKTFCNSLNSLVANFWWKGQ 1236
+V L WK L+ A + L K++I+A+PLY M PK + L F W
Sbjct: 588 QVHVMLANWKANHLSLARRVTLAKSVIEAVPLYPMMTTIIPKACIEEIQKLQRKFVWGDT 409
Query: 1237 GKDRGIHWRSWEKMTLSKDEGGMGFREFRMQNLAILAKQAWRVLTNPEALWVCVLKSVYF 1296
R H WE M+ K G+G R + N A + K W + + +L V++ Y
Sbjct: 408 EVSRRYHAVGWETMSKPKTIYGLGLRRLDVMNKACIMKLGWSIYSGSNSLCTEVMRGKYQ 229
Query: 1297 PTSDFLNASLGR-NPSWMWRSLL 1318
+ L + S +W++L+
Sbjct: 228 RSESLEEIFLEKPTDSSLWKALV 160
>BG585866
Length = 828
Score = 64.7 bits (156), Expect = 3e-10
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 6/188 (3%)
Frame = +3
Query: 1330 WAVGGGLLIEVWGDNWLSSG-----EALIQPHNAPDMKVSELISPHGEGWNSALVRSLFQ 1384
W G G W NW S G + H+ + V ++ + G+ S + ++
Sbjct: 123 WRAGSGNS-SFWYTNWSSLGLLGTQAPFVDIHDL-HLTVKDVFTTGGQHTQS--LYTILP 290
Query: 1385 PELALKVLQTPVS-KLNQTDVLFWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPE 1443
++A + T ++ + D WPH G YT SG+ S + + N
Sbjct: 291 TDIAEVINNTHLNFNASIGDAYIWPHNSNGVYTAKSGYSWILSQT--------ETVNYNN 446
Query: 1444 LLWRTIWKSQLPQKVKVFLWKASHNSLAVKYNLWRKRILPSGQCPVCCEAQETVEHMFFV 1503
W IW+ ++P+K K FLW A HN++ L + ++ S C C E +E+ H
Sbjct: 447 SSWSWIWRLKIPEKYKFFLWLACHNAVPTLSLLNHRNMVNSAICSRCGEHEESFFHCVRD 626
Query: 1504 CPWTRAVW 1511
C +++ +W
Sbjct: 627 CRFSKIIW 650
>BE248682 similar to GP|18568269|gb putative gag-pol polyprotein {Zea mays},
partial (1%)
Length = 441
Score = 64.7 bits (156), Expect = 3e-10
Identities = 41/124 (33%), Positives = 61/124 (49%)
Frame = +3
Query: 1037 RGLRQGDPLSPYLFVLATDVLSFMLTQAQRDGEISGFRFTPHSPPLTHLFFADDSLLFAE 1096
RGL+QGDPL+P+LF+L + +S ++ A GF ++HL +ADD+L
Sbjct: 24 RGLKQGDPLAPFLFLLVAEGISGLMKNAVNRNLFQGFDVKRGGTRVSHLQYADDTLCIGM 203
Query: 1097 ATVKEATSIIHILNLYNRASGQRINVAKSGLIFGRSASNRVKRDISNLLHMAIWDSPGQY 1156
TV ++ +L + ASG ++N KS LI G + L+ P Y
Sbjct: 204 PTVDNLWTLKALLQGFEMASGLKVNFHKSSLI-GINVPRDFMEAACRFLNCREESIPFIY 380
Query: 1157 LGLP 1160
LGLP
Sbjct: 381 LGLP 392
>BG585499
Length = 792
Score = 62.4 bits (150), Expect = 2e-09
Identities = 49/194 (25%), Positives = 78/194 (39%), Gaps = 6/194 (3%)
Frame = +3
Query: 1446 WRTIWKSQLPQKVKVFLWKASHNSLAVKY--NLWRKRILPSGQCPVCCEAQETVEHMFFV 1503
W+ +W + P + + F+W +H + Y + W R+L + CP C A ETV H+
Sbjct: 225 WKMLWGWRGPHRTQTFMWLVAHGCILTNYRRSRWGTRVLAT--CPCCGNADETVLHVLCD 398
Query: 1504 CPWTRAVWFG-SSLQWVVSPQGLGSFDVWLLQKITALQTISLDFNKDFSTLACILWSIWR 1562
C VW W+ + W+ + ++ F K T W +W
Sbjct: 399 CRPASQVWIRLVPSDWITNFFSFDDCRDWVFKNLSKRSNGVSKF-KWQPTFMTTCWHMWT 575
Query: 1563 GRNKAVFNA--IRPD-PTFAIQQVASTLSAIDLAKPVTEKVISDGNQNTNQRPTAWRPPF 1619
RNKA+F RPD PT+ IQ + ++ EK S G W
Sbjct: 576 WRNKAIFEEGFQRPDNPTYVIQNFIMAIER-SCSRSFAEKTSS*GKMCILHGKDHWMGG- 749
Query: 1620 GNLLKINVDASWVS 1633
NL+ +++ WV+
Sbjct: 750 RNLIVMDMQR*WVA 791
>BG584442
Length = 775
Score = 58.9 bits (141), Expect = 2e-08
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +1
Query: 1196 EVLIKAIIQAIPLYAMAMVHFPKTFCNSLNSLVANFWWKGQGKDR-GIHWRSWEKMTLSK 1254
EV+IK +Q+I Y M++ + + + ++ F W G++R G+HW S EK+ + K
Sbjct: 427 EVMIKYALQSISSYVMSIFLLLNSQVDEIEKIMNTFSWVHVGENRKGMHWMS*EKLFVHK 606
Query: 1255 DEGGMGFREFRMQNLAILAKQAWRVLTNPEALWV 1288
+ GGMGF +F N+ +L KQ L N L++
Sbjct: 607 NYGGMGFTDFTTFNIPMLGKQV*SFLLNRTTLFL 708
>TC81772
Length = 982
Score = 46.2 bits (108), Expect(2) = 2e-07
Identities = 21/57 (36%), Positives = 31/57 (53%)
Frame = -2
Query: 1291 LKSVYFPTSDFLNASLGRNPSWMWRSLLAGRDFISRYIRWAVGGGLLIEVWGDNWLS 1347
L+S F T + L +G NPS++W S+ R + W +G G I +W D+WLS
Sbjct: 762 LRSKIFFTLELLGVVIGHNPSYIWCSV*TLRMVLEEGHHWKIGDGSSINIWTDHWLS 592
Score = 28.9 bits (63), Expect(2) = 2e-07
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = -1
Query: 1260 GFREFRMQNLAILAKQAWRVLTNP 1283
GF + +L +L KQ W++LTNP
Sbjct: 853 GFHDIYGLDLVMLGKQVWKLLTNP 782
>TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative retroelement
{Oryza sativa (japonica cultivar-group)}, partial (1%)
Length = 625
Score = 50.8 bits (120), Expect(2) = 2e-07
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = +2
Query: 1016 VKGATYKLKVNGFLSSTLTPGRGLRQGDPLSPYLFVLATDVLSFMLTQAQRDGEISGFRF 1075
V+ Y + VN + P RGL+QGD LSPY+F++ + LSF++ A+ G+ G
Sbjct: 107 VESNDYYVLVNNDAVDPIIPSRGLQQGDHLSPYIFIICVEGLSFLIPHAKERGDTHGTSI 286
Query: 1076 TPHSPPLT 1083
+PP++
Sbjct: 287 *RGAPPVS 310
Score = 23.9 bits (50), Expect(2) = 2e-07
Identities = 8/26 (30%), Positives = 18/26 (68%)
Frame = +1
Query: 983 MSKTYDRLEWTFLEKTLLAYGFHPIW 1008
+SK Y+R++ +L++ ++ GF+ W
Sbjct: 7 ISKVYNRVD*DYLKEIMIKMGFNNRW 84
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.334 0.144 0.487
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,264,866
Number of Sequences: 36976
Number of extensions: 992108
Number of successful extensions: 7866
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 4313
Number of HSP's successfully gapped in prelim test: 393
Number of HSP's that attempted gapping in prelim test: 3305
Number of HSP's gapped (non-prelim): 5130
length of query: 1771
length of database: 9,014,727
effective HSP length: 110
effective length of query: 1661
effective length of database: 4,947,367
effective search space: 8217576587
effective search space used: 8217576587
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0288.7