BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0280a.7
(121 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86748 similar to GP|15485584|emb|CAC67503. SET-domain-containi... 41 1e-04
TC92618 weakly similar to PIR|T02416|T02416 probable SET-domain ... 34 0.015
TC89006 weakly similar to GP|20466308|gb|AAM20471.1 unknown prot... 33 0.034
TC76881 homologue to GP|3043422|emb|CAA06217.1 endoxyloglucan tr... 32 0.076
TC79435 similar to GP|21555364|gb|AAM63841.1 unknown {Arabidopsi... 29 0.38
TC90743 GP|16025115|gb|AAL11411.1 major histocompatibility class... 27 1.9
TC89979 similar to GP|17979351|gb|AAL49901.1 unknown protein {Ar... 26 3.2
TC85358 similar to GP|7270022|emb|CAB79838.1 predicted protein {... 26 3.2
TC76880 homologue to GP|3043422|emb|CAA06217.1 endoxyloglucan tr... 26 3.2
TC87702 weakly similar to SP|O48923|C7DA_SOYBN Cytochrome P450 7... 26 4.2
TC91139 similar to GP|15292825|gb|AAK92781.1 unknown protein {Ar... 25 5.5
TC89196 similar to GP|19401700|gb|AAL87667.1 transcription facto... 25 7.1
TC78971 similar to GP|20260346|gb|AAM13071.1 unknown protein {Ar... 25 7.1
TC89665 similar to GP|13898655|gb|AAK48848.1 expansin {Prunus ce... 25 7.1
BG587693 weakly similar to GP|17066863|gb Su(VAR)3-9-related pro... 25 9.3
BQ139044 similar to GP|9857294|dbj CpABA1 {Vigna unguiculata}, p... 25 9.3
TC86701 weakly similar to SP|Q9MB73|LGT_CITUN Limonoid UDP-gluco... 25 9.3
TC85151 homologue to GP|9758155|dbj|BAB08712.1 40S ribosomal pro... 25 9.3
>TC86748 similar to GP|15485584|emb|CAC67503. SET-domain-containing protein
{Nicotiana tabacum}, partial (61%)
Length = 2742
Score = 40.8 bits (94), Expect = 1e-04
Identities = 23/72 (31%), Positives = 40/72 (54%), Gaps = 1/72 (1%)
Frame = +1
Query: 23 NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVEL-VIDSVSECGF 81
NRISQ L++ L+V+ +KGW + + D I GT + EY E+ N ++ + +E +
Sbjct: 1825 NRISQAGLKFRLEVFRTSNKGWGLRSWDAIRAGTFICEYAGEVIDNARAEMLGAENEDEY 2004
Query: 82 EIDCLKIINEVE 93
D +I ++E
Sbjct: 2005 IFDSTRIYQQLE 2040
>TC92618 weakly similar to PIR|T02416|T02416 probable SET-domain
transcription regulator At2g23750 [imported] -
Arabidopsis thaliana, partial (77%)
Length = 781
Score = 33.9 bits (76), Expect = 0.015
Identities = 18/48 (37%), Positives = 28/48 (57%)
Frame = +3
Query: 23 NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVE 70
NRI Q ++ L+V++ KG+ V + IL GT V EY+ E+ + E
Sbjct: 54 NRILQNGVRVKLEVFMTEKKGFGVRAGEAILRGTFVCEYIGEVLEQQE 197
>TC89006 weakly similar to GP|20466308|gb|AAM20471.1 unknown protein
{Arabidopsis thaliana}, partial (48%)
Length = 1715
Score = 32.7 bits (73), Expect = 0.034
Identities = 15/43 (34%), Positives = 25/43 (57%)
Frame = +3
Query: 23 NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKEL 65
NR+SQ L++ ++V+ KGW + + D I G + EY E+
Sbjct: 843 NRVSQTGLKHQMEVFKTKDKGWGLRSWDPIRAGAFICEYAGEV 971
>TC76881 homologue to GP|3043422|emb|CAA06217.1 endoxyloglucan transferase
{Cicer arietinum}, partial (94%)
Length = 1442
Score = 31.6 bits (70), Expect = 0.076
Identities = 12/43 (27%), Positives = 25/43 (57%)
Frame = -2
Query: 32 YCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVID 74
+C+QV + + + N+ + +FG P+L Y E ++ E+ +D
Sbjct: 1054 FCIQVEFEANVSYRCNSYKWCIFGAPILVYAIEQHQDHEIQVD 926
>TC79435 similar to GP|21555364|gb|AAM63841.1 unknown {Arabidopsis
thaliana}, partial (74%)
Length = 776
Score = 29.3 bits (64), Expect = 0.38
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 2/49 (4%)
Frame = -2
Query: 27 QKDLQYCLQVYLK--ISKGWAVNTRDFILFGTPVLEYVKELRKNVELVI 73
Q ++QY + V+ K I + W +N ILFG+ Y LR+N+ ++I
Sbjct: 649 QTNIQYIVTVFFKNTIHRNWIMNC---ILFGSNSALYPWSLRRNICIII 512
>TC90743 GP|16025115|gb|AAL11411.1 major histocompatibility class I receptor
{Stizostedion vitreum}, partial (2%)
Length = 685
Score = 26.9 bits (58), Expect = 1.9
Identities = 16/38 (42%), Positives = 19/38 (49%)
Frame = -3
Query: 42 KGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSEC 79
KG VNT LFG VL +V ++K E SV C
Sbjct: 230 KGRCVNTNLLCLFGFFVLGFVSHVQKKEEKESSSV*RC 117
>TC89979 similar to GP|17979351|gb|AAL49901.1 unknown protein {Arabidopsis
thaliana}, partial (87%)
Length = 867
Score = 26.2 bits (56), Expect = 3.2
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +3
Query: 25 ISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGFEID 84
I KD++ + Y K+ W V+ D + G P L + L ++ +L V C +D
Sbjct: 408 IEHKDMEKVCKTYGKVYHFWQVDRGDKLPLGIPQL--MMALTRDGQLYDHLVQGC---VD 572
Query: 85 CLKIINEVEGRNR 97
+ + E E +NR
Sbjct: 573 RMGVDFEKERKNR 611
>TC85358 similar to GP|7270022|emb|CAB79838.1 predicted protein {Arabidopsis
thaliana}, partial (32%)
Length = 1298
Score = 26.2 bits (56), Expect = 3.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 12 RAKLWLWT*FDNRISQKDLQYCLQVYLKISKGW 44
R K W W+ RI +++ ++CL + L+ GW
Sbjct: 667 RIKKW*WSKM-RRIMRRECRWCLMLLLEKKMGW 572
>TC76880 homologue to GP|3043422|emb|CAA06217.1 endoxyloglucan transferase
{Cicer arietinum}, partial (98%)
Length = 1170
Score = 26.2 bits (56), Expect = 3.2
Identities = 11/43 (25%), Positives = 23/43 (52%)
Frame = -2
Query: 32 YCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVID 74
+C+ V L+ + + N+ +F P+L Y E ++ E+ +D
Sbjct: 905 FCILVELEANVFYQCNSCKLCIFDAPILAYAIEQHQDHEIQVD 777
>TC87702 weakly similar to SP|O48923|C7DA_SOYBN Cytochrome P450 71D10 (EC
1.14.-.-). [Soybean] {Glycine max}, partial (51%)
Length = 1732
Score = 25.8 bits (55), Expect = 4.2
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -2
Query: 77 SECGFEIDCLKIINEVEGRNRLLHNVSLPA 106
S C F I C +IN +R+++ VSLPA
Sbjct: 1026 SACAFFITCGFLINSDIAHSRVVNVVSLPA 937
>TC91139 similar to GP|15292825|gb|AAK92781.1 unknown protein {Arabidopsis
thaliana}, partial (22%)
Length = 1108
Score = 25.4 bits (54), Expect = 5.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 40 ISKGWAVNTRDFILFGTPVL 59
I +GW + T+ FIL G P +
Sbjct: 464 IKRGWDIKTQRFILEGAPTI 523
>TC89196 similar to GP|19401700|gb|AAL87667.1 transcription factor RAU1 {Oryza
sativa}, partial (63%)
Length = 1312
Score = 25.0 bits (53), Expect = 7.1
Identities = 7/21 (33%), Positives = 18/21 (85%)
Frame = +1
Query: 59 LEYVKELRKNVELVIDSVSEC 79
+EY+K+LRK ++++ ++ ++C
Sbjct: 1072 VEYIKDLRKQLKILTETKAKC 1134
>TC78971 similar to GP|20260346|gb|AAM13071.1 unknown protein {Arabidopsis
thaliana}, partial (48%)
Length = 2260
Score = 25.0 bits (53), Expect = 7.1
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +1
Query: 58 VLEYVKELRKNVE---LVIDSVSECGFEIDCLKIINEVEG 94
VLEY E ++ + L SVS GFE+D I+ E+ G
Sbjct: 520 VLEYRDESQRLDQCNRLYDSSVSNDGFEVDASHIVQELGG 639
>TC89665 similar to GP|13898655|gb|AAK48848.1 expansin {Prunus cerasus},
partial (92%)
Length = 1006
Score = 25.0 bits (53), Expect = 7.1
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +3
Query: 53 LFGTPVLEYVKELRKNVELVIDSVSECGFEIDCLKIINEVEGR 95
LF P L + K + D E G D +IN V+GR
Sbjct: 3 LFSCPPLSNILTKSKKKKKNSDGNGEYGLRCDSYYVINNVDGR 131
>BG587693 weakly similar to GP|17066863|gb Su(VAR)3-9-related protein 4
{Arabidopsis thaliana}, partial (29%)
Length = 688
Score = 24.6 bits (52), Expect = 9.3
Identities = 11/27 (40%), Positives = 16/27 (58%), Gaps = 1/27 (3%)
Frame = +2
Query: 23 NRISQKDLQYCLQVYL-KISKGWAVNT 48
NR+ Q+ + Y LQV+ KGW + T
Sbjct: 44 NRVIQRGITYNLQVFFTSEGKGWGLRT 124
>BQ139044 similar to GP|9857294|dbj CpABA1 {Vigna unguiculata}, partial
(35%)
Length = 668
Score = 24.6 bits (52), Expect = 9.3
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 38 LKISKGWAVNTRDFIL 53
LKI KGW NT D IL
Sbjct: 72 LKIFKGWCDNTIDLIL 119
>TC86701 weakly similar to SP|Q9MB73|LGT_CITUN Limonoid
UDP-glucosyltransferase (EC 2.4.1.210) (Limonoid
glucosyltransferase) (Limonoid GTase), partial (16%)
Length = 827
Score = 24.6 bits (52), Expect = 9.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 51 FILFGTPVLEYVKELRKNVELVIDSVSE 78
F+ FGT VLE +K L K +++++ E
Sbjct: 711 FLSFGTLVLEQIKNLSKVFCVLVETYEE 794
>TC85151 homologue to GP|9758155|dbj|BAB08712.1 40S ribosomal protein S3
{Arabidopsis thaliana}, partial (91%)
Length = 1066
Score = 24.6 bits (52), Expect = 9.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 71 LVIDSVSECGFEIDCLKIINEVEGRNRLLHNVSLPASFC 109
L+ ++VS C F +D L I++ G LLH+V + FC
Sbjct: 799 LLFENVSIC-FGVDLL--ISDASGLTVLLHSVIVIKDFC 906
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.337 0.148 0.478
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,885,002
Number of Sequences: 36976
Number of extensions: 46337
Number of successful extensions: 338
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of query: 121
length of database: 9,014,727
effective HSP length: 84
effective length of query: 37
effective length of database: 5,908,743
effective search space: 218623491
effective search space used: 218623491
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0280a.7