Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0280a.7
         (121 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC86748 similar to GP|15485584|emb|CAC67503. SET-domain-containi...    41  1e-04
TC92618 weakly similar to PIR|T02416|T02416 probable SET-domain ...    34  0.015
TC89006 weakly similar to GP|20466308|gb|AAM20471.1 unknown prot...    33  0.034
TC76881 homologue to GP|3043422|emb|CAA06217.1 endoxyloglucan tr...    32  0.076
TC79435 similar to GP|21555364|gb|AAM63841.1 unknown {Arabidopsi...    29  0.38
TC90743 GP|16025115|gb|AAL11411.1 major histocompatibility class...    27  1.9
TC89979 similar to GP|17979351|gb|AAL49901.1 unknown protein {Ar...    26  3.2
TC85358 similar to GP|7270022|emb|CAB79838.1 predicted protein {...    26  3.2
TC76880 homologue to GP|3043422|emb|CAA06217.1 endoxyloglucan tr...    26  3.2
TC87702 weakly similar to SP|O48923|C7DA_SOYBN Cytochrome P450 7...    26  4.2
TC91139 similar to GP|15292825|gb|AAK92781.1 unknown protein {Ar...    25  5.5
TC89196 similar to GP|19401700|gb|AAL87667.1 transcription facto...    25  7.1
TC78971 similar to GP|20260346|gb|AAM13071.1 unknown protein {Ar...    25  7.1
TC89665 similar to GP|13898655|gb|AAK48848.1 expansin {Prunus ce...    25  7.1
BG587693 weakly similar to GP|17066863|gb Su(VAR)3-9-related pro...    25  9.3
BQ139044 similar to GP|9857294|dbj CpABA1 {Vigna unguiculata}, p...    25  9.3
TC86701 weakly similar to SP|Q9MB73|LGT_CITUN Limonoid UDP-gluco...    25  9.3
TC85151 homologue to GP|9758155|dbj|BAB08712.1 40S ribosomal pro...    25  9.3

>TC86748 similar to GP|15485584|emb|CAC67503. SET-domain-containing protein
            {Nicotiana tabacum}, partial (61%)
          Length = 2742

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 23/72 (31%), Positives = 40/72 (54%), Gaps = 1/72 (1%)
 Frame = +1

Query: 23   NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVEL-VIDSVSECGF 81
            NRISQ  L++ L+V+   +KGW + + D I  GT + EY  E+  N    ++ + +E  +
Sbjct: 1825 NRISQAGLKFRLEVFRTSNKGWGLRSWDAIRAGTFICEYAGEVIDNARAEMLGAENEDEY 2004

Query: 82   EIDCLKIINEVE 93
              D  +I  ++E
Sbjct: 2005 IFDSTRIYQQLE 2040


>TC92618 weakly similar to PIR|T02416|T02416 probable SET-domain
           transcription regulator At2g23750 [imported] -
           Arabidopsis thaliana, partial (77%)
          Length = 781

 Score = 33.9 bits (76), Expect = 0.015
 Identities = 18/48 (37%), Positives = 28/48 (57%)
 Frame = +3

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVE 70
           NRI Q  ++  L+V++   KG+ V   + IL GT V EY+ E+ +  E
Sbjct: 54  NRILQNGVRVKLEVFMTEKKGFGVRAGEAILRGTFVCEYIGEVLEQQE 197


>TC89006 weakly similar to GP|20466308|gb|AAM20471.1 unknown protein
           {Arabidopsis thaliana}, partial (48%)
          Length = 1715

 Score = 32.7 bits (73), Expect = 0.034
 Identities = 15/43 (34%), Positives = 25/43 (57%)
 Frame = +3

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKEL 65
           NR+SQ  L++ ++V+    KGW + + D I  G  + EY  E+
Sbjct: 843 NRVSQTGLKHQMEVFKTKDKGWGLRSWDPIRAGAFICEYAGEV 971


>TC76881 homologue to GP|3043422|emb|CAA06217.1 endoxyloglucan transferase
            {Cicer arietinum}, partial (94%)
          Length = 1442

 Score = 31.6 bits (70), Expect = 0.076
 Identities = 12/43 (27%), Positives = 25/43 (57%)
 Frame = -2

Query: 32   YCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVID 74
            +C+QV  + +  +  N+  + +FG P+L Y  E  ++ E+ +D
Sbjct: 1054 FCIQVEFEANVSYRCNSYKWCIFGAPILVYAIEQHQDHEIQVD 926


>TC79435 similar to GP|21555364|gb|AAM63841.1 unknown {Arabidopsis
           thaliana}, partial (74%)
          Length = 776

 Score = 29.3 bits (64), Expect = 0.38
 Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 2/49 (4%)
 Frame = -2

Query: 27  QKDLQYCLQVYLK--ISKGWAVNTRDFILFGTPVLEYVKELRKNVELVI 73
           Q ++QY + V+ K  I + W +N    ILFG+    Y   LR+N+ ++I
Sbjct: 649 QTNIQYIVTVFFKNTIHRNWIMNC---ILFGSNSALYPWSLRRNICIII 512


>TC90743 GP|16025115|gb|AAL11411.1 major histocompatibility class I receptor
           {Stizostedion vitreum}, partial (2%)
          Length = 685

 Score = 26.9 bits (58), Expect = 1.9
 Identities = 16/38 (42%), Positives = 19/38 (49%)
 Frame = -3

Query: 42  KGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSEC 79
           KG  VNT    LFG  VL +V  ++K  E    SV  C
Sbjct: 230 KGRCVNTNLLCLFGFFVLGFVSHVQKKEEKESSSV*RC 117


>TC89979 similar to GP|17979351|gb|AAL49901.1 unknown protein {Arabidopsis
           thaliana}, partial (87%)
          Length = 867

 Score = 26.2 bits (56), Expect = 3.2
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = +3

Query: 25  ISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGFEID 84
           I  KD++   + Y K+   W V+  D +  G P L  +  L ++ +L    V  C   +D
Sbjct: 408 IEHKDMEKVCKTYGKVYHFWQVDRGDKLPLGIPQL--MMALTRDGQLYDHLVQGC---VD 572

Query: 85  CLKIINEVEGRNR 97
            + +  E E +NR
Sbjct: 573 RMGVDFEKERKNR 611


>TC85358 similar to GP|7270022|emb|CAB79838.1 predicted protein {Arabidopsis
           thaliana}, partial (32%)
          Length = 1298

 Score = 26.2 bits (56), Expect = 3.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 12  RAKLWLWT*FDNRISQKDLQYCLQVYLKISKGW 44
           R K W W+    RI +++ ++CL + L+   GW
Sbjct: 667 RIKKW*WSKM-RRIMRRECRWCLMLLLEKKMGW 572


>TC76880 homologue to GP|3043422|emb|CAA06217.1 endoxyloglucan transferase
           {Cicer arietinum}, partial (98%)
          Length = 1170

 Score = 26.2 bits (56), Expect = 3.2
 Identities = 11/43 (25%), Positives = 23/43 (52%)
 Frame = -2

Query: 32  YCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVID 74
           +C+ V L+ +  +  N+    +F  P+L Y  E  ++ E+ +D
Sbjct: 905 FCILVELEANVFYQCNSCKLCIFDAPILAYAIEQHQDHEIQVD 777


>TC87702 weakly similar to SP|O48923|C7DA_SOYBN Cytochrome P450 71D10 (EC
            1.14.-.-). [Soybean] {Glycine max}, partial (51%)
          Length = 1732

 Score = 25.8 bits (55), Expect = 4.2
 Identities = 13/30 (43%), Positives = 18/30 (59%)
 Frame = -2

Query: 77   SECGFEIDCLKIINEVEGRNRLLHNVSLPA 106
            S C F I C  +IN     +R+++ VSLPA
Sbjct: 1026 SACAFFITCGFLINSDIAHSRVVNVVSLPA 937


>TC91139 similar to GP|15292825|gb|AAK92781.1 unknown protein {Arabidopsis
           thaliana}, partial (22%)
          Length = 1108

 Score = 25.4 bits (54), Expect = 5.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 40  ISKGWAVNTRDFILFGTPVL 59
           I +GW + T+ FIL G P +
Sbjct: 464 IKRGWDIKTQRFILEGAPTI 523


>TC89196 similar to GP|19401700|gb|AAL87667.1 transcription factor RAU1 {Oryza
            sativa}, partial (63%)
          Length = 1312

 Score = 25.0 bits (53), Expect = 7.1
 Identities = 7/21 (33%), Positives = 18/21 (85%)
 Frame = +1

Query: 59   LEYVKELRKNVELVIDSVSEC 79
            +EY+K+LRK ++++ ++ ++C
Sbjct: 1072 VEYIKDLRKQLKILTETKAKC 1134


>TC78971 similar to GP|20260346|gb|AAM13071.1 unknown protein {Arabidopsis
           thaliana}, partial (48%)
          Length = 2260

 Score = 25.0 bits (53), Expect = 7.1
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 58  VLEYVKELRKNVE---LVIDSVSECGFEIDCLKIINEVEG 94
           VLEY  E ++  +   L   SVS  GFE+D   I+ E+ G
Sbjct: 520 VLEYRDESQRLDQCNRLYDSSVSNDGFEVDASHIVQELGG 639


>TC89665 similar to GP|13898655|gb|AAK48848.1 expansin {Prunus cerasus},
          partial (92%)
          Length = 1006

 Score = 25.0 bits (53), Expect = 7.1
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 53 LFGTPVLEYVKELRKNVELVIDSVSECGFEIDCLKIINEVEGR 95
          LF  P L  +    K  +   D   E G   D   +IN V+GR
Sbjct: 3  LFSCPPLSNILTKSKKKKKNSDGNGEYGLRCDSYYVINNVDGR 131


>BG587693 weakly similar to GP|17066863|gb Su(VAR)3-9-related protein 4
          {Arabidopsis thaliana}, partial (29%)
          Length = 688

 Score = 24.6 bits (52), Expect = 9.3
 Identities = 11/27 (40%), Positives = 16/27 (58%), Gaps = 1/27 (3%)
 Frame = +2

Query: 23 NRISQKDLQYCLQVYL-KISKGWAVNT 48
          NR+ Q+ + Y LQV+     KGW + T
Sbjct: 44 NRVIQRGITYNLQVFFTSEGKGWGLRT 124


>BQ139044 similar to GP|9857294|dbj CpABA1 {Vigna unguiculata}, partial
          (35%)
          Length = 668

 Score = 24.6 bits (52), Expect = 9.3
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 38 LKISKGWAVNTRDFIL 53
          LKI KGW  NT D IL
Sbjct: 72 LKIFKGWCDNTIDLIL 119


>TC86701 weakly similar to SP|Q9MB73|LGT_CITUN Limonoid
           UDP-glucosyltransferase (EC 2.4.1.210) (Limonoid
           glucosyltransferase) (Limonoid GTase), partial (16%)
          Length = 827

 Score = 24.6 bits (52), Expect = 9.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 51  FILFGTPVLEYVKELRKNVELVIDSVSE 78
           F+ FGT VLE +K L K   +++++  E
Sbjct: 711 FLSFGTLVLEQIKNLSKVFCVLVETYEE 794


>TC85151 homologue to GP|9758155|dbj|BAB08712.1 40S ribosomal protein S3
           {Arabidopsis thaliana}, partial (91%)
          Length = 1066

 Score = 24.6 bits (52), Expect = 9.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 71  LVIDSVSECGFEIDCLKIINEVEGRNRLLHNVSLPASFC 109
           L+ ++VS C F +D L  I++  G   LLH+V +   FC
Sbjct: 799 LLFENVSIC-FGVDLL--ISDASGLTVLLHSVIVIKDFC 906


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.337    0.148    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,885,002
Number of Sequences: 36976
Number of extensions: 46337
Number of successful extensions: 338
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of query: 121
length of database: 9,014,727
effective HSP length: 84
effective length of query: 37
effective length of database: 5,908,743
effective search space: 218623491
effective search space used: 218623491
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 52 (24.6 bits)


Lotus: description of TM0280a.7