BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0276.7
(180 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC89725 similar to PIR|T05494|T05494 glycine-rich protein T19K4.... 37 1e-05
TC86766 weakly similar to PIR|T06291|T06291 extensin homolog T9E... 45 2e-05
TC93504 weakly similar to PIR|S46286|S46286 RNA-binding protein ... 39 0.001
TC81307 weakly similar to GP|4335772|gb|AAD17449.1| unknown prot... 39 0.001
TC87476 homologue to PIR|T11622|T11622 extensin class 1 precurso... 38 0.002
NP212732 NP212732|AF106929.1|AAD39890.1 putative cell wall protein 38 0.002
TC80881 similar to PIR|T11622|T11622 extensin class 1 precursor ... 38 0.002
TC89427 weakly similar to GP|4557063|gb|AAD22502.1| expressed pr... 37 0.004
TC87869 similar to GP|23504577|emb|CAD51456. chromosome condensa... 37 0.004
TC79502 similar to GP|19881712|gb|AAM01113.1 Unknown protein {Or... 37 0.006
TC90933 similar to SP|P27484|GRP2_NICSY Glycine-rich protein 2. ... 36 0.007
TC89001 similar to GP|5726567|gb|AAD48471.1| glycine-rich RNA-bi... 36 0.009
TC76523 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - ... 36 0.009
AL374421 similar to PIR|S59529|S59 RNA-binding glycine-rich prot... 36 0.009
TC80072 similar to GP|14423520|gb|AAK62442.1 Unknown protein {Ar... 35 0.012
TC93166 homologue to GP|6091768|gb|AAF03478.1| hypothetical prot... 35 0.012
TC88123 similar to GP|8777484|dbj|BAA97064.1 contains similarity... 35 0.016
TC81043 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproli... 35 0.016
TC79934 similar to GP|20259633|gb|AAM14173.1 putative GAR1 prote... 32 0.021
TC92293 similar to SP|Q64733|FXB2_MOUSE Forkhead box protein B2 ... 32 0.14
>TC89725 similar to PIR|T05494|T05494 glycine-rich protein T19K4.150 -
Arabidopsis thaliana, partial (17%)
Length = 378
Score = 36.6 bits (83), Expect(2) = 1e-05
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 22 GSGDTECWLGWWRRWCW**WWWRWWR 47
G G + W WW + W WWWR WR
Sbjct: 45 GEGVYQRWRWWWWKVWWWWWWWRRWR 122
Score = 31.2 bits (69), Expect = 0.23
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 29 WLGWWRRWCW**WWWRW 45
W WW W W W WRW
Sbjct: 81 WKVWWWWWWWRRWRWRW 131
Score = 28.1 bits (61), Expect(2) = 1e-05
Identities = 23/59 (38%), Positives = 31/59 (51%), Gaps = 5/59 (8%)
Frame = +2
Query: 48 VVVTALAVVVQVVAATVVVLEVMVIMVVTLAAV--EEGGRGDSGG---GGPLWYILVMA 101
VVV AV V V AAT VV V + +V AA+ E GD GG G + +L+++
Sbjct: 95 VVVVVEAVAVAVEAATAVVNLVTLQEIVQQAALVRSE*SGGDGGGLVVSGVAFLVLILS 271
Score = 26.9 bits (58), Expect = 4.4
Identities = 24/81 (29%), Positives = 32/81 (38%)
Frame = +2
Query: 46 WRVVVTALAVVVQVVAATVVVLEVMVIMVVTLAAVEEGGRGDSGGGGPLWYILVMAMTTT 105
WR V A+ VVV VVV+E + + V AV V +T
Sbjct: 44 WRGSVPAVEVVVVEGMVVVVVVEAVAVAVEAATAV------------------VNLVTLQ 169
Query: 106 SEVVEAVVVVLEGEGDDGGSV 126
V +A +V E G DGG +
Sbjct: 170 EIVQQAALVRSE*SGGDGGGL 232
>TC86766 weakly similar to PIR|T06291|T06291 extensin homolog T9E8.80 -
Arabidopsis thaliana, partial (18%)
Length = 1260
Score = 44.7 bits (104), Expect = 2e-05
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 6/25 (24%)
Frame = -3
Query: 29 WLGW------WRRWCW**WWWRWWR 47
W W WRRW W* WWWRWWR
Sbjct: 100 WWRW*EYRSRWRRWWW*IWWWRWWR 26
Score = 35.0 bits (79), Expect(2) = 7e-04
Identities = 14/22 (63%), Positives = 15/22 (67%), Gaps = 3/22 (13%)
Frame = -3
Query: 32 WWR-RWCW**--WWWRWWRVVV 50
WWR RW W * WWWRW +VV
Sbjct: 172 WWRXRWWWR*VSWWWRW*AIVV 107
Score = 32.0 bits (71), Expect(2) = 0.016
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 13/30 (43%)
Frame = -3
Query: 31 GWW-----RRWCW**WW--------WRWWR 47
GWW W W *WW WRWWR
Sbjct: 388 GWWWVIRCLMWRWR*WWWRFYTRWRWRWWR 299
Score = 30.0 bits (66), Expect = 0.52
Identities = 15/42 (35%), Positives = 21/42 (49%), Gaps = 2/42 (4%)
Frame = -1
Query: 118 GEGDDGG--SVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDGG 157
G+GD GG V + +D G ++G GG + G DGG
Sbjct: 396 GDGDGGG**GV*CGAGDDGGGGSTQGGGGGGGGSTQGGGDGG 271
Score = 27.7 bits (60), Expect = 2.6
Identities = 10/21 (47%), Positives = 12/21 (56%), Gaps = 5/21 (23%)
Frame = -3
Query: 32 WWR-----RWCW**WWWRWWR 47
WWR RW W ++ RWWR
Sbjct: 340 WWRFYTRWRWRWWRFYTRWWR 278
Score = 27.7 bits (60), Expect = 2.6
Identities = 13/31 (41%), Positives = 14/31 (44%), Gaps = 15/31 (48%)
Frame = -3
Query: 32 WWRRWCW**------------WWWR---WWR 47
+WRRW ** WWWR WWR
Sbjct: 238 YWRRWWG**IWIYGWSR*VRWWWWRXRWWWR 146
Score = 27.7 bits (60), Expect = 2.6
Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 7/22 (31%)
Frame = -3
Query: 32 WWR-RWCW**WWW------RWW 46
WWR RW WWW RWW
Sbjct: 286 WWRWRWW*IDWWWR*VYWRRWW 221
Score = 27.7 bits (60), Expect = 2.6
Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Frame = -3
Query: 32 WWR---RWCW**WWWRWW 46
WWR RW W WRWW
Sbjct: 307 WWRFYTRW----WRWRWW 266
Score = 27.3 bits (59), Expect = 3.4
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Frame = -3
Query: 32 WWRRWC---W**WW-WRWWRVV 49
WWR W* WW W WW V+
Sbjct: 436 WWR*GIGIYW*WWW*WGWWWVI 371
Score = 23.5 bits (49), Expect(2) = 7e-04
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 1 GGGQGSCDNNDEGDGGDGCRDGSGDTEC 28
GGG G GDGG G G G EC
Sbjct: 318 GGGGGGGSTQGGGDGGGGE*TGGGG-EC 238
Score = 21.9 bits (45), Expect(2) = 0.016
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -1
Query: 1 GGGQGSCDNNDEGDGGDG 18
GGG+G D G GDG
Sbjct: 435 GGGEG*AYTGDGGGDGDG 382
>TC93504 weakly similar to PIR|S46286|S46286 RNA-binding protein - wood
tobacco, partial (55%)
Length = 576
Score = 38.9 bits (89), Expect = 0.001
Identities = 25/75 (33%), Positives = 30/75 (39%), Gaps = 11/75 (14%)
Frame = +2
Query: 29 WLGWWRRWCW-----------**WWWRWWRVVVTALAVVVQVVAATVVVLEVMVIMVVTL 77
WL WWRRW W * WWW+ W VV A ++V E+M
Sbjct: 404 WL-WWRRWLWRRRWLWWWWWL*WWWWKLWWVV------------AEIMVAEIM------- 523
Query: 78 AAVEEGGRGDSGGGG 92
G G+ GGGG
Sbjct: 524 ------GGGNYGGGG 550
Score = 31.2 bits (69), Expect(2) = 0.005
Identities = 20/47 (42%), Positives = 24/47 (50%)
Frame = +1
Query: 49 VVTALAVVVQVVAATVVVLEVMVIMVVTLAAVEEGGRGDSGGGGPLW 95
V A AV + VV A VVV+E+MV GG G+ GGG W
Sbjct: 421 VAMAAAVAMVVVVAIVVVVEIMV-----------GGGGNYGGGNYGW 528
Score = 30.0 bits (66), Expect = 0.52
Identities = 16/46 (34%), Positives = 19/46 (40%)
Frame = +3
Query: 1 GGGQGSCDNNDEGDGGDGCRDGSGDTECWLGWWRRWCW**WWWRWW 46
GGG G G G G SG + GWWR+ WW + W
Sbjct: 399 GGGYGGGGGYGGGGGYGGGGGYSGGGGNYGGWWRKL----WWRKLW 524
Score = 24.6 bits (52), Expect(2) = 0.005
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +2
Query: 36 WCW**WWWRWWR 47
W W W W WWR
Sbjct: 389 WVW--WRWLWWR 418
>TC81307 weakly similar to GP|4335772|gb|AAD17449.1| unknown protein
{Arabidopsis thaliana}, partial (31%)
Length = 1171
Score = 38.5 bits (88), Expect = 0.001
Identities = 20/58 (34%), Positives = 35/58 (59%)
Frame = -2
Query: 99 VMAMTTTSEVVEAVVVVLEGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDG 156
V M+T +E + +V V GDDGG D+D +++ G+ + ++GGD+ ND + +G
Sbjct: 750 VHQMSTPAEWLNSVGVF--HYGDDGGECP*DTDVEDEKGECKNEDGGDSANDFREGEG 583
Score = 28.1 bits (61), Expect = 2.0
Identities = 10/24 (41%), Positives = 14/24 (57%)
Frame = -2
Query: 4 QGSCDNNDEGDGGDGCRDGSGDTE 27
+G C N D GD + R+G G+ E
Sbjct: 645 KGECKNEDGGDSANDFREGEGEAE 574
>TC87476 homologue to PIR|T11622|T11622 extensin class 1 precursor - cowpea,
partial (48%)
Length = 939
Score = 38.1 bits (87), Expect = 0.002
Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 34/83 (40%)
Frame = -3
Query: 1 GGGQGSCDNNDEGDGGD-----GCRDGSGD----TECWLGW-----------------WR 34
GGG+G EG GGD G +G G + W W WR
Sbjct: 439 GGGEG------EGGGGDL*TYGGGGEGDGGRW*LVDIWRRW*RRWWRRRFINVWRWWGWR 278
Query: 35 RWCW**---WW-----WRWWRVV 49
RW W* WW WRWWR++
Sbjct: 277 RWRW*LVNIWWGRRGRWRWWRLI 209
Score = 30.8 bits (68), Expect = 0.30
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 9/29 (31%)
Frame = -3
Query: 28 CW-----LGWWRRWCW**WWWR----WWR 47
CW + WR W W WWW WWR
Sbjct: 184 CWWRRRLVDIWRWW*WRGWWWTLIDIWWR 98
Score = 25.0 bits (53), Expect(2) = 2.4
Identities = 22/79 (27%), Positives = 25/79 (30%), Gaps = 8/79 (10%)
Frame = -1
Query: 83 GGRGDSGGGGPLWYILVMAMTTTSEVVEAVVVVLEGEGDDGGSVSDDSDEDNDSGDSEGD 142
GG GD GGG + + G G +G D GD EG
Sbjct: 243 GGEGDGGGGD---------------------L*I*GGGGEGVGGGGDL*TYGGGGDGEGG 127
Query: 143 NG--------GDNDNDGGD 153
G GD D GGD
Sbjct: 126 GGLL*TYGGGGDGDGGGGD 70
Score = 21.2 bits (43), Expect(2) = 2.4
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -2
Query: 41 WWWRWWRVVVTA--LAVVVQVVAATVVVLEVMVIMVVTLAAV 80
WW R W VVT + VV+ + + + V+ + T+ V
Sbjct: 389 WW*RGWWSVVTCRYMEAVVKEMVEEEIYKRMEVVGMETVEVV 264
>NP212732 NP212732|AF106929.1|AAD39890.1 putative cell wall protein
Length = 576
Score = 37.7 bits (86), Expect = 0.002
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 29 WLGWWRRWCW**WWWRWW 46
W WW WCW WWW W
Sbjct: 150 WWWWWCSWCWFCWWWCSW 97
Score = 29.3 bits (64), Expect = 0.88
Identities = 10/29 (34%), Positives = 10/29 (34%), Gaps = 10/29 (34%)
Frame = -1
Query: 28 CWLGWWRRWCW**WW----------WRWW 46
C WW WCW W W WW
Sbjct: 390 CSFWWWSSWCWCCSWCCSWCCSWCCWCWW 304
Score = 26.2 bits (56), Expect = 7.5
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -1
Query: 28 CWLGWWRRWCW 38
CW WW WCW
Sbjct: 117 CW--WWCSWCW 91
>TC80881 similar to PIR|T11622|T11622 extensin class 1 precursor - cowpea,
partial (34%)
Length = 597
Score = 37.7 bits (86), Expect = 0.002
Identities = 26/93 (27%), Positives = 33/93 (34%), Gaps = 33/93 (35%)
Frame = -3
Query: 1 GGGQGSCDNNDEGDGGDGCRDGSGDTECWLGW------------WRRWCW**W------- 41
GGG+G +G GGD G G W W WR W W W
Sbjct: 388 GGGEG------DGGGGDL*TYGGGGEGRWWRWRFVVIRWVFVDIWRWWRWRRWRWGFVVI 227
Query: 42 --------------WWRWWRVVVTALAVVVQVV 60
WW W R+VV LA +V+++
Sbjct: 226 WR*FEIIWWLLSMTWWCWLRIVVVWLAAIVRLI 128
Score = 35.4 bits (80), Expect = 0.012
Identities = 37/110 (33%), Positives = 40/110 (35%), Gaps = 21/110 (19%)
Frame = -3
Query: 83 GGRGDSGGGGPLWYILVMAMTTTSEVVEAVVVVLEGEGDD-----GGSVSDDSDED---- 133
GG GD GGG + T E EG G D GGS D D
Sbjct: 577 GGEGDGGGGD---------L*TYGGGGEG-----EGGGGDLYT*FGGSEGDGGGGDL*TY 440
Query: 134 NDSGDSEGDNG--------GDNDNDGGD----SDGGW**KQ*WWRWRVVV 171
GD EG G G+ D GGD GG + WWRWR VV
Sbjct: 439 GGGGDGEGGGGLL*TYGGGGEGDGGGGDL*TYGGGG---EGRWWRWRFVV 299
Score = 28.5 bits (62), Expect(2) = 0.074
Identities = 9/18 (50%), Positives = 9/18 (50%), Gaps = 4/18 (22%)
Frame = -2
Query: 33 WRRWCW**WWWR----WW 46
WR W W WWW WW
Sbjct: 440 WRWW*WRGWWWTLIDIWW 387
Score = 27.7 bits (60), Expect = 2.6
Identities = 10/23 (43%), Positives = 12/23 (51%), Gaps = 5/23 (21%)
Frame = -2
Query: 32 WWRR-----WCW**WWWRWWRVV 49
WWRR W W *W WW ++
Sbjct: 467 WWRRRLVDIWRWW*WRGWWWTLI 399
Score = 23.1 bits (48), Expect(2) = 0.074
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
Frame = -1
Query: 74 VVTLAAVEEGGRGDSGG------GGPLW 95
VVT +EE +GD GG GG LW
Sbjct: 363 VVTCRRMEEVVKGDGGGGDL***GGYLW 280
>TC89427 weakly similar to GP|4557063|gb|AAD22502.1| expressed protein
{Arabidopsis thaliana}, partial (50%)
Length = 753
Score = 37.0 bits (84), Expect = 0.004
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 122 DGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 155
+G SDD DED+D D + D+G D D D + D
Sbjct: 430 NGAGGSDDDDEDDDDDDDDNDDGEDEDEDEEEDD 531
Score = 31.2 bits (69), Expect = 0.23
Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +1
Query: 119 EGDDGGSVSDDSDEDNDSGDSEGDNGGDNDND-GGDSD 155
E DG DD DE D D D DND D GD D
Sbjct: 286 ENKDGSETEDDDDE--DDDDDVNDEDDDNDEDFSGDED 393
Score = 29.3 bits (64), Expect = 0.88
Identities = 17/58 (29%), Positives = 25/58 (42%), Gaps = 18/58 (31%)
Frame = +1
Query: 117 EGEGDDGGSVSDDSDED------------------NDSGDSEGDNGGDNDNDGGDSDG 156
E + DD DD+DED N +G S+ D+ D+D+D + DG
Sbjct: 325 EDDDDDVNDEDDDNDEDFSGDEDDEDADPEDDPVPNGAGGSDDDDEDDDDDDDDNDDG 498
Score = 28.1 bits (61), Expect = 2.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 118 GEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDGG 157
G+ DD + +D N +G S+ D+ D+D+D D+D G
Sbjct: 382 GDEDDEDADPEDDPVPNGAGGSDDDDEDDDDDD-DDNDDG 498
Score = 26.6 bits (57), Expect = 5.7
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 120 GDDGGSVSDDSDE-DNDSGDSEGDNGGDNDND 150
G D DD D+ DND G+ E ++ ++D++
Sbjct: 442 GSDDDDEDDDDDDDDNDDGEDEDEDEEEDDDE 537
>TC87869 similar to GP|23504577|emb|CAD51456. chromosome condensation
protein putative {Plasmodium falciparum 3D7}, partial
(0%)
Length = 1154
Score = 37.0 bits (84), Expect = 0.004
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Frame = +1
Query: 116 LEGEGDDGGSVSD------DSDEDNDSGDSEGDNGGDNDNDGGDSD 155
++ G DG + +D D D+D +SG S D+G DND D D+D
Sbjct: 478 IDSGGFDGDTETDNVVDAFDKDKDCNSGSSSDDDGSDNDGDDADAD 615
Score = 33.5 bits (75), Expect = 0.047
Identities = 25/81 (30%), Positives = 36/81 (43%)
Frame = +1
Query: 70 MVIMVVTLAAVEEGGRGDSGGGGPLWYILVMAMTTTSEVVEAVVVVLEGEGDDGGSVSDD 129
M + L A+ E DSGG T T VV+A + + + GS SDD
Sbjct: 430 MTLWKPPLHAIHEDEDIDSGGFD--------GDTETDNVVDAFD---KDKDCNSGSSSDD 576
Query: 130 SDEDNDSGDSEGDNGGDNDND 150
DND D++ DN G++ +
Sbjct: 577 DGSDNDGDDADADNTGEDSEE 639
Score = 32.0 bits (71), Expect = 0.14
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +1
Query: 117 EGEGDDGGSVSDDSDEDN--DSGDSEGD--NGGDNDNDGGDSDG 156
E E D G D++ DN D+ D + D +G +D+DG D+DG
Sbjct: 466 EDEDIDSGGFDGDTETDNVVDAFDKDKDCNSGSSSDDDGSDNDG 597
>TC79502 similar to GP|19881712|gb|AAM01113.1 Unknown protein {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 720
Score = 36.6 bits (83), Expect = 0.006
Identities = 23/67 (34%), Positives = 29/67 (42%), Gaps = 20/67 (29%)
Frame = +1
Query: 28 CWLGWWR--RWC--------W**W-WWRWWRV---------VVTALAVVVQVVAATVVVL 67
C WW RWC W W WW WW V VVT L ++V +A V L
Sbjct: 28 CRCLWWLSIRWCFKWRWKCRWRLWGWWLWWEVALDQVPIMGVVTILLLIVSELAMLVAAL 207
Query: 68 EVMVIMV 74
++V M+
Sbjct: 208ALLVDMM 228
>TC90933 similar to SP|P27484|GRP2_NICSY Glycine-rich protein 2. [Wood
tobacco] {Nicotiana sylvestris}, partial (44%)
Length = 368
Score = 36.2 bits (82), Expect = 0.007
Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = +2
Query: 32 WWRRWCW**WW-WRWWR 47
WWRRW * WW W WWR
Sbjct: 305 WWRRWWL*AWWRWLWWR 355
Score = 29.3 bits (64), Expect = 0.88
Identities = 11/26 (42%), Positives = 12/26 (45%), Gaps = 4/26 (15%)
Frame = +2
Query: 25 DTECWLGWWR----RWCW**WWWRWW 46
+T W WW RW W W RWW
Sbjct: 296 ETRWWRRWWL*AWWRWLW---WRRWW 364
>TC89001 similar to GP|5726567|gb|AAD48471.1| glycine-rich RNA-binding
protein {Glycine max}, partial (90%)
Length = 488
Score = 35.8 bits (81), Expect = 0.009
Identities = 11/24 (45%), Positives = 12/24 (49%)
Frame = +2
Query: 24 GDTECWLGWWRRWCW**WWWRWWR 47
G W+ WWR WWW WWR
Sbjct: 434 GRRRSWIWWWR------WWWLWWR 487
Score = 34.3 bits (77), Expect = 0.027
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2
Query: 29 WLGWWRRWCW**WWWRWWR 47
WL WWRRW W WW W R
Sbjct: 326 WL-WWRRWLWRRRWWIWRR 379
Score = 33.5 bits (75), Expect = 0.047
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 4/19 (21%)
Frame = +2
Query: 32 WWRRW----CW**WWWRWW 46
WWR W W WWWRWW
Sbjct: 419 WWRLWGRRRSW-IWWWRWW 472
Score = 30.4 bits (67), Expect = 0.40
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Frame = +2
Query: 32 WWRRWC-W**WWW--RWW 46
WWRRW W W W RWW
Sbjct: 314 WWRRWLWWRRWLWRRRWW 367
Score = 27.7 bits (60), Expect = 2.6
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Frame = +2
Query: 32 WWRRWCW**WW--WRWWR 47
WWRR * WW W WWR
Sbjct: 296 WWRR---*RWWRRWLWWR 340
>TC76523 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - alfalfa,
partial (69%)
Length = 1615
Score = 35.8 bits (81), Expect = 0.009
Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Frame = +2
Query: 32 WWRRWCW**WWWR-WWR 47
WW RW W WWW WWR
Sbjct: 1112 WW*RWRWKEWWWSIWWR 1162
Score = 33.9 bits (76), Expect = 0.036
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Frame = +2
Query: 29 WLGWWR---RWCW**WWWRWWRVV 49
W WWR RW W * WW+ WR +
Sbjct: 1145 WSIWWRWKKRWIWW*EWWKRWRSI 1216
Score = 26.2 bits (56), Expect = 7.5
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Frame = +2
Query: 29 WLGW-WRRWCW**WWWRW 45
W W W+ W W WWRW
Sbjct: 1115 W*RWRWKEWWWS-IWWRW 1165
>AL374421 similar to PIR|S59529|S59 RNA-binding glycine-rich protein-1
(RGP-1c) - wood tobacco, partial (62%)
Length = 310
Score = 35.8 bits (81), Expect = 0.009
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +1
Query: 26 TECWLGWWRR--WCW**WWWRWW 46
+E W WWRR W W WWW WW
Sbjct: 244 SEPW*WWWRRPWWRWIRWWW-WW 309
>TC80072 similar to GP|14423520|gb|AAK62442.1 Unknown protein {Arabidopsis
thaliana}, partial (17%)
Length = 746
Score = 35.4 bits (80), Expect = 0.012
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 117 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDG 156
E + DD + +D D DND D +GD D+D++ + DG
Sbjct: 433 ESDEDDEMPIFNDKDIDNDETDEDGDEEEDDDDEDDEYDG 552
>TC93166 homologue to GP|6091768|gb|AAF03478.1| hypothetical protein
{Arabidopsis thaliana}, partial (38%)
Length = 1163
Score = 35.4 bits (80), Expect = 0.012
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Frame = +3
Query: 28 CWLGWWRRWCW---**WWWRWWR 47
CW GW WCW W W WWR
Sbjct: 474 CWWGWCWCWCWGWSWSWCWCWWR 542
Score = 32.0 bits (71), Expect = 0.14
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Frame = +3
Query: 28 CWLGWWRRWCW**WWWR---WWRVV 49
CW GW WCW WWR WW V+
Sbjct: 501 CW-GWSWSWCW--CWWRRRVWWFVL 566
>TC88123 similar to GP|8777484|dbj|BAA97064.1 contains similarity to
RNA-binding protein~gene_id:K15M2.15 {Arabidopsis
thaliana}, partial (11%)
Length = 815
Score = 35.0 bits (79), Expect = 0.016
Identities = 12/18 (66%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = +3
Query: 31 GW-WRRWCW**WWWRWWR 47
GW WR W W WWW WWR
Sbjct: 117 GWLWR*WWWW-WWWLWWR 167
Score = 30.8 bits (68), Expect = 0.30
Identities = 15/39 (38%), Positives = 18/39 (45%), Gaps = 8/39 (20%)
Frame = +3
Query: 29 WLGWWRRWCW**W------WWRW--WRVVVTALAVVVQV 59
W WWR+WC W WW W WR T +VQ+
Sbjct: 150 WWLWWRQWC--DWSRCGSRWWTWFCWR*WWTWTCFLVQI 260
Score = 30.4 bits (67), Expect = 0.40
Identities = 11/27 (40%), Positives = 15/27 (54%), Gaps = 1/27 (3%)
Frame = +3
Query: 26 TECWLGWWRRWCW**WW-WRWWRVVVT 51
+ C WW +CW *WW W + V +T
Sbjct: 183 SRCGSRWWTWFCWR*WWTWTCFLVQIT 263
Score = 29.6 bits (65), Expect = 0.68
Identities = 10/26 (38%), Positives = 11/26 (41%), Gaps = 5/26 (19%)
Frame = +3
Query: 28 CW-----LGWWRRWCW**WWWRWWRV 48
CW WW W W WW WR+
Sbjct: 33 CWESGSVFNWWSWWVW---WWSLWRL 101
Score = 26.2 bits (56), Expect = 7.5
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3
Query: 29 WLGWWRRWCW**WWWRW 45
W WW W W WW +W
Sbjct: 126 WR*WWWWWWWL-WWRQW 173
>TC81043 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproline-rich
glycoprotein DZ-HRGP {Volvox carteri f. nagariensis},
partial (19%)
Length = 555
Score = 35.0 bits (79), Expect = 0.016
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 9/28 (32%)
Frame = -1
Query: 28 CWLGW--WRRWCW**WW-------WRWW 46
CW W W WCW WW W WW
Sbjct: 288 CWCWWTPWTWWCWWLWWTPRTWRRWWWW 205
Score = 34.7 bits (78), Expect = 0.021
Identities = 11/21 (52%), Positives = 12/21 (56%), Gaps = 3/21 (14%)
Frame = -1
Query: 29 WLGWWRR---WCW**WWWRWW 46
W +WR WCW* WWW W
Sbjct: 405 WTAFWRCRLWWCW*CWWWTRW 343
Score = 32.0 bits (71), Expect = 0.14
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -1
Query: 28 CWLGWWRRWCW**WWWRWW 46
CW WW W WWW W
Sbjct: 255 CWWLWWTPRTWRRWWWWLW 199
Score = 31.6 bits (70), Expect = 0.18
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 6/25 (24%)
Frame = -1
Query: 28 CWLGWWRRW------CW**WWWRWW 46
CW WW RW CW W RWW
Sbjct: 363 CW--WWTRWTPWTWWCWWTWRNRWW 295
Score = 29.6 bits (65), Expect = 0.68
Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 7/26 (26%)
Frame = -1
Query: 28 CWLGW---WRRWCW**----WWWRWW 46
CW W W WCW WW WW
Sbjct: 324 CWWTWRNRWWCWCWCWWTPWTWWCWW 247
Score = 26.2 bits (56), Expect = 7.5
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = -1
Query: 32 WWRRWCW**WWWRW 45
WW W W WW W
Sbjct: 330 WWCWWTWRNRWWCW 289
>TC79934 similar to GP|20259633|gb|AAM14173.1 putative GAR1 protein
{Arabidopsis thaliana}, partial (87%)
Length = 814
Score = 32.3 bits (72), Expect(2) = 0.021
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Frame = +3
Query: 29 WLGWW--RRWCW**WWWRW 45
W WW RRW W WWRW
Sbjct: 147 WTWWWSIRRWTW---WWRW 194
Score = 28.9 bits (63), Expect = 1.2
Identities = 9/17 (52%), Positives = 10/17 (57%)
Frame = +3
Query: 29 WLGWWRRWCW**WWWRW 45
W W RRW W WW+ W
Sbjct: 534 WWFWQRRWSW-RWWFSW 581
Score = 28.1 bits (61), Expect = 2.0
Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 13/37 (35%)
Frame = +3
Query: 23 SGDTEC--WLGWWRRWCW**WW-----------WRWW 46
+ +T C W WW W *WW W WW
Sbjct: 48 NNETPCKRWRPWWWIQRWT*WWIQRWS*RRRFSWTWW 158
Score = 27.3 bits (59), Expect = 3.4
Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 4/18 (22%)
Frame = +3
Query: 33 WRRWCW**W---W-WRWW 46
WR W W W W WRWW
Sbjct: 519 WRPWRWWFWQRRWSWRWW 572
Score = 21.2 bits (43), Expect(2) = 0.021
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +1
Query: 1 GGGQGSCDNNDEGDGGDGCRDGSG 24
GGG+G G G RDG G
Sbjct: 70 GGGRGGGFRGGRDGGFRGGRDGGG 141
>TC92293 similar to SP|Q64733|FXB2_MOUSE Forkhead box protein B2
(Transcription factor FKH-4). [Mouse] {Mus musculus},
partial (4%)
Length = 626
Score = 32.0 bits (71), Expect = 0.14
Identities = 12/22 (54%), Positives = 15/22 (67%), Gaps = 2/22 (9%)
Frame = -3
Query: 24 GDTECWLGWW--RRWCW**WWW 43
G+ E + GWW R+ W**WWW
Sbjct: 531 GERERYGGWW*WDRFSW**WWW 466
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.328 0.147 0.543
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,030,000
Number of Sequences: 36976
Number of extensions: 102603
Number of successful extensions: 4651
Number of sequences better than 10.0: 450
Number of HSP's better than 10.0 without gapping: 2820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3932
length of query: 180
length of database: 9,014,727
effective HSP length: 90
effective length of query: 90
effective length of database: 5,686,887
effective search space: 511819830
effective search space used: 511819830
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0276.7