BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0269b.2
(2064 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna... 193 5e-49
BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ... 135 2e-31
BG586308 weakly similar to PIR|F84528|F8 probable retroelement p... 64 1e-21
AL367832 weakly similar to GP|14091845|gb Putative retroelement ... 100 6e-21
CB065285 weakly similar to PIR|A84500|A84 probable retroelement ... 99 2e-20
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana... 96 1e-19
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis... 96 2e-19
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro... 91 4e-18
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin... 90 1e-17
BG587127 weakly similar to PIR|H84506|H84 probable retroelement ... 64 8e-10
BG644720 45 2e-06
TC83629 weakly similar to GP|6692261|gb|AAF24611.1| putative RNa... 51 4e-06
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ... 47 6e-05
TC91935 41 0.006
TC91086 39 0.027
BG644740 similar to PIR|A84460|A84 probable retroelement pol pol... 36 0.14
BG454871 weakly similar to GP|10140673|g putative gag-pol polypr... 35 0.30
AL374389 32 2.0
TC78992 similar to GP|20466530|gb|AAM20582.1 protein kinase-like... 30 7.4
TC87899 phosphatidylinositol 3-kinase [Medicago truncatula] 30 9.7
>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
alternata}, partial (21%)
Length = 1540
Score = 193 bits (491), Expect = 5e-49
Identities = 135/416 (32%), Positives = 216/416 (51%), Gaps = 9/416 (2%)
Frame = +1
Query: 997 ALIDPELKDRMVKLLKEFKDCFAWDYDEMPGLSREVVELKLPIKEDKK------PVKQLP 1050
A +DP K +L+EF D F + SR +++ +P+ DK P L
Sbjct: 307 APVDPR-KHVPAGVLEEFPDLFNPEKAYQVPASRGLLDHAIPLIPDKDGNDPPLPWGPLY 483
Query: 1051 RRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATP 1110
++LV +K+ +E LL FI+ + A V+ V K G +R C+D+R LNA T
Sbjct: 484 GMSRQELLV-LKKTLEDLLDKGFIKASGSAAG-APVLFVRKPGGGIRFCVDYRALNAITK 657
Query: 1111 KDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVM 1170
KD Y +P+ + AG + + LD + ++++ I +ED KTAFR G +EW+V
Sbjct: 658 KDRYPLPLISETLRRVAGARWFTKLDVVAAFHKMRIKDEDQEKTAFRT--RYGLFEWIVC 831
Query: 1171 PFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVV-KSPSRDDHLLHLRKSFERMRKYG 1229
PFGL A AT+QR +N H+F++ F+ YIDD+++ + S+ DH +R+ R+ G
Sbjct: 832 PFGLTGAPATFQRYINKTLHEFLDDFVTAYIDDVLIYTTGSKKDHEAQVRRVLRRLADAG 1011
Query: 1230 LKMNPLKCAFGVIAGDFLGFVVHK-KGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFL 1288
L ++P KC F V ++GF++ KG+ + K AI D PP S K +S LG N+
Sbjct: 1012 LSLDPKKCEFSVTTVKYVGFILTAGKGVSCDPLKLAAIRDWLPPGSVKGARSFLGFCNYY 1191
Query: 1289 RRFIANLSEKTKSFSPLLRLKKED-AFRWEAEHQKAFDELKVYLSSPPIMASPIRGKPMK 1347
+ FI SE T+ PL RL ++D FRW AE + AF +LK + P++
Sbjct: 1192 KDFIPGYSEITE---PLTRLTRKDFPFRWGAEQEAAFTKLKRLFAEEPVLRMFDPEAVTT 1362
Query: 1348 LYISATDGTIGSMLAQEDEDSKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVK 1403
+ + +G +L QED + + S+ L+ AE Y + +K L ++ +C++
Sbjct: 1363 VETDCSGFALGGVLTQEDGTGAAHPVAFHSQRLSPAEYNYPIHDKELLAVW-ACLR 1527
>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
thaliana, partial (13%)
Length = 763
Score = 135 bits (339), Expect = 2e-31
Identities = 66/136 (48%), Positives = 97/136 (70%)
Frame = +2
Query: 1149 EDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKS 1208
+D+ KTAF GTY + VMPFGLKNAG+TYQR++N +F D + M+VYIDD++VKS
Sbjct: 11 DDLEKTAFITDR--GTYCYKVMPFGLKNAGSTYQRLVNRMFADKLGNTMEVYIDDMLVKS 184
Query: 1209 PSRDDHLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILD 1268
DHL HL++ F+ + +Y +K+NP KC FGV +G+FLG++V ++GIE+N + AILD
Sbjct: 185 LRATDHLNHLKE*FKTLDEYIMKLNPAKCTFGVTSGEFLGYIVTQQGIEVNPKQITAILD 364
Query: 1269 TSPPTSKKQLQSLLGK 1284
P + +++Q L G+
Sbjct: 365 LPSPKNSREVQRLTGE 412
Score = 82.4 bits (202), Expect = 2e-15
Identities = 49/145 (33%), Positives = 80/145 (54%), Gaps = 7/145 (4%)
Frame = +3
Query: 1266 ILDTSPPTSKKQLQSLL-------GKINFLRRFIANLSEKTKSFSPLLRLKKEDAFRWEA 1318
IL SPP +Q + G+I L RFI+ ++K F LL K F W+
Sbjct: 336 ILSRSPPY*TSLVQRIAERSSDSRGRIAALNRFISRSTDKCLPFYKLLCGNKR--FVWDE 509
Query: 1319 EHQKAFDELKVYLSSPPIMASPIRGKPMKLYISATDGTIGSMLAQEDEDSKERAIFYLSR 1378
+ ++AF++LK YL++PP+++ P G + LYI+ + + S+L +ED +++ IFY S+
Sbjct: 510 KCEEAFEQLKQYLTTPPVLSKPEAGDTLSLYIAISSTAVSSVLIREDR-GEQKPIFYTSK 686
Query: 1379 VLNDAETRYTMIEKLCLCLYFSCVK 1403
+ D ETRY +EK+ + S K
Sbjct: 687 RMTDPETRYPTLEKMAFAVITSARK 761
>BG586308 weakly similar to PIR|F84528|F8 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 686
Score = 63.9 bits (154), Expect(2) = 1e-21
Identities = 30/70 (42%), Positives = 41/70 (57%)
Frame = -2
Query: 1824 GLPESLTTDQGTVFVGQKVASFAESWGIKLLTSTPYYAQANGQVEAANKTLISLIKKHVG 1883
GLP + TD G+ F+ K F E W I+L T++P Y Q+NGQ EA+NK +I +KK +
Sbjct: 682 GLPYEIVTDNGSHFISNKFREFCERWRIRLNTASPRYPQSNGQAEASNKIIIDGLKKRLD 503
Query: 1884 RKPKNWHQTL 1893
K W L
Sbjct: 502 LKKGCWADEL 473
Score = 59.3 bits (142), Expect(2) = 1e-21
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Frame = -3
Query: 1896 VLWAYRNSPKESTGATPFRLAYGQEAVLPVEVYLQS---CRIQRQEEIPSEDYWNMMLDE 1952
VLW++R +P+ +T +TPF +A+ EA+ P EV + S R+ + E+ ++ +N
Sbjct: 465 VLWSHRTNPRGATKSTPFSMAHRVEAMAPAEVNVTSL*RSRMPQNIELNNDRLFN----A 298
Query: 1953 LVNLDEERLLVLDTLTRQKDRIAKAYNKKVRAKSFMLGDYVWKVVLPINKKDKRYRKWVP 2012
L ++E R L + + +I YNK V+++ LGD V V N K+ K
Sbjct: 297 LETIEERRDQALLRIQNYQHQIESYYNKTVKSQPLKLGDIVLCKVFE-NTKELNAGKLGT 121
Query: 2013 NWEG 2016
NWEG
Sbjct: 120 NWEG 109
>AL367832 weakly similar to GP|14091845|gb Putative retroelement {Oryza
sativa}, partial (2%)
Length = 384
Score = 100 bits (249), Expect = 6e-21
Identities = 46/119 (38%), Positives = 78/119 (64%)
Frame = -1
Query: 976 QDPLEEVDLGDGLEKRPTYISALIDPELKDRMVKLLKEFKDCFAWDYDEMPGLSREVVEL 1035
Q+ +E ++LG KR + A ++ +K ++ +LL+E+ D FA Y++MPGL ++VE
Sbjct: 357 QEEIELINLGTEENKREIKVGAALEEGVKRKIFQLLREYLDIFACSYEDMPGLDPKIVEH 178
Query: 1036 KLPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNG 1094
++P K + PV+ RR HPD+ +KIK E+++ + F+ T Y +W+AN+VPV KK+G
Sbjct: 177 RIPTKPECPPVR*KLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDG 1
>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
polyprotein [imported] - Arabidopsis thaliana, partial
(2%)
Length = 592
Score = 99.0 bits (245), Expect = 2e-20
Identities = 65/171 (38%), Positives = 91/171 (53%), Gaps = 2/171 (1%)
Frame = -2
Query: 1482 WKLFFDGSSHKNGTGIGMFIVSPRGIPTKFKFRIKSNCSNNEAEYEALTSGLEILIALGA 1541
W L FDG+ + G GIG IVSP+G F RI C+NN AEYEA G+E I +
Sbjct: 534 WGLVFDGAVNAYGKGIGAVIVSPQGHYIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 355
Query: 1542 KNVVVKGDSELVIKQLTKEYKCISENLARY*TKASNLLAKFDEARLGHVSRVDNQEANEL 1601
K++ + GDS LVI Q+ E++ NL Y A LL F + L H+ R +NQ A+ L
Sbjct: 354 KHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 175
Query: 1602 AQIASGYMVDKCRLKELIEVKEKLNPSDLDIL--VIDNMAPNDWRKPIVDY 1650
A ++S + V+ +I+V+ PS + + VID N +VDY
Sbjct: 174 ATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGNVIDQTGEN-----VVDY 37
>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
(10%)
Length = 624
Score = 95.9 bits (237), Expect = 1e-19
Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 1/188 (0%)
Frame = +2
Query: 1676 LFKKNVDGTLLKCLSEDDAFIAISAVHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCME 1735
L+K+ D ++C++E++ + H H A K + + G +WPT+ KD
Sbjct: 41 LYKQCADNIYIRCVAEEEIPGILFHCHGSNYAGHFAVSKTVSKIQQAGFWWPTMFKDAHS 220
Query: 1736 YAKRCQDCQRHAGIQHVPASELHSIIKPWPFRGWALDLIGEINPCSSRQHKYIIVAIDYF 1795
+ +C CQR I + I++ F W +D +G SS +KYI+VA+DY
Sbjct: 221 FISKCDPCQRQGNIS*RNEMPQNFILEVEVFDVWGIDFMGPFP--SSYNNKYILVAVDYV 394
Query: 1796 TKWVEAIPLQNVTQDTVIEFISSIVY-RFGLPESLTTDQGTVFVGQKVASFAESWGIKLL 1854
+KWVEAI V++ S+++ RFG+P + +D G+ F+ + + G++
Sbjct: 395 SKWVEAIASPTNDATVVVKMFKSVIFPRFGVPRVVISDGGSHFINKVFEKLLKKNGVRHK 574
Query: 1855 TSTPYYAQ 1862
+T Y+ Q
Sbjct: 575 VATAYHPQ 598
>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
chromosome II BAC F26H6; putative retroelement pol
polyprotein, partial (1%)
Length = 636
Score = 95.5 bits (236), Expect = 2e-19
Identities = 55/167 (32%), Positives = 84/167 (49%), Gaps = 25/167 (14%)
Frame = -2
Query: 1392 KLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAP 1451
K C L ++ +L++Y+ + S D IK++ KP L RI +W + L+EY + Y
Sbjct: 635 KTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRS 456
Query: 1452 LKAVKGQAIADFLADQTL----------PQEIITYVGIQP---------------WKLFF 1486
KA+KG +AD LA Q L P E I Y+ ++ W L F
Sbjct: 455 QKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIF 276
Query: 1487 DGSSHKNGTGIGMFIVSPRGIPTKFKFRIKSNCSNNEAEYEALTSGL 1533
DG+ + G GIG +++P+G F R++ +C+NN AEYEA G+
Sbjct: 275 DGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGI 135
>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
blast fungus gypsy retroelement (fragment), partial (14%)
Length = 1708
Score = 91.3 bits (225), Expect = 4e-18
Identities = 83/341 (24%), Positives = 139/341 (40%), Gaps = 13/341 (3%)
Frame = +2
Query: 1702 HDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYAKRCQDCQRHAGIQHVPASELHSII 1761
HD H I+ R+ +WP + + + C C G H+ +
Sbjct: 194 HDSTAAGHPGRNGTLEIVSRK-FFWPGQSQTVRRFVRNCDVC----GGIHIWRQAKRGFL 358
Query: 1762 KPWPFRG-----WALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVIEFI 1816
KP P ++D I + P R +Y+ V +D +K V + + + +
Sbjct: 359 KPLPVPNRLHSDLSMDFITSLPPTRGRGSQYLWVIVDRLSKSVTLEEMDTMEAEACAQRF 538
Query: 1817 SSIVYRF-GLPESLTTDQGTVFVGQKVASFAESWGIKLLTSTPYYAQANGQVEAANKTLI 1875
S YRF G+P+S+ +D+G+ +VG+ F G+ L ST Y+ Q +G E N+ +
Sbjct: 539 LSCHYRFHGMPQSIVSDRGSNWVGRFWREFCRLTGVTQLLSTSYHPQTDGGTERWNQEIQ 718
Query: 1876 SLIKKHVGRKPKNWHQTLGQVLWAYRNSPKESTGATPFRLAYGQEAVLPVEVYLQSCRIQ 1935
++++ +V NW L V A RN S GATPF + +G V P+ + +
Sbjct: 719 AVLRAYVCWSQDNWGDLLPTVQLALRNRHNSSIGATPFFVEHGYH-VDPIPTVEDTGGVV 895
Query: 1936 RQEEIPSEDYWNMMLDELVNLDEERLLVLDTLTRQKDRIAKAYNKKVRAKSFMLGDYVW- 1994
+ E ++ M D + E + Q+ A A ++ A + +GD VW
Sbjct: 896 SEGEAAAQLLVKRMKDVTGFIQAE------IVAAQQRSEASANKRRCPADRYQVGDKVWL 1057
Query: 1995 -----KVVLPINKKDKRYRKW-VPNWEGPFTVEKVLVNNAY 2029
K P K D + K+ V + P VE + Y
Sbjct: 1058 NVSNYKSPRPSKKLDWLHHKYEVTRFVTPHVVELNVPGTVY 1180
>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
Ty3-Gypsy type {Oryza sativa}, partial (15%)
Length = 716
Score = 89.7 bits (221), Expect = 1e-17
Identities = 56/179 (31%), Positives = 101/179 (56%)
Frame = +2
Query: 1052 RFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPK 1111
R +P L +K +++ LL FI+ + Y + V+ + KK+G +R+ ID+ LN K
Sbjct: 92 RINPLKLKVLKLQLKDLLEKGFIQPSIYP*GVV-VLFLKKKDGFLRMSIDYPQLNNVNIK 268
Query: 1112 DEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMP 1171
+Y +P+ + + D+ G ++ +D G +Q + EDV KTAFR G YE +VM
Sbjct: 269 IKYPLPLIDELFDNLQGSKWFFKIDLRLG*HQHRVIGEDVPKTAFRI--RYGHYEILVMS 442
Query: 1172 FGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDHLLHLRKSFERMRKYGL 1230
FG N + +MN +F D++++ + V+ +DI++ S + ++H HLR + + ++ GL
Sbjct: 443 FG*TNPPMAFMELMNRVFQDYLDSLVIVFSNDILIYSKNENEHENHLRLALKVLKDIGL 619
>BG587127 weakly similar to PIR|H84506|H84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(13%)
Length = 415
Score = 63.5 bits (153), Expect = 8e-10
Identities = 41/125 (32%), Positives = 62/125 (48%)
Frame = +3
Query: 1498 GMFIVSPRGIPTKFKFRIKSNCSNNEAEYEALTSGLEILIALGAKNVVVKGDSELVIKQL 1557
G+ + SP K FR++ + SNNE YEAL +G+ + L +N+ DS+LV Q
Sbjct: 3 GIRLTSPTNEILKQSFRLEFHASNNETNYEALIAGVRLAHGLKIRNIHAYCDSQLVASQF 182
Query: 1558 TKEYKCISENLARY*TKASNLLAKFDEARLGHVSRVDNQEANELAQIASGYMVDKCRLKE 1617
+ EY+ E + Y L K D L + R +N +A+ LA +AS LK
Sbjct: 183 SGEYEARDELMDTYLKLVQKLAQKLDYFALTRIPRSENVQADALAALASS---SDPELKR 353
Query: 1618 LIEVK 1622
+I V+
Sbjct: 354 VIPVR 368
>BG644720
Length = 678
Score = 45.1 bits (105), Expect(2) = 2e-06
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 11/154 (7%)
Frame = -3
Query: 1643 WRKPIVDY------LQNPVGTTDRKTKY--RAMSYVIMGNE-LFKKNVDGTLLKCLSEDD 1693
WR+PI+ Y L+NP R++ Y R ++ NE L+ +G LL CL E++
Sbjct: 463 WRQPIIIYMCYGIFLENP-----RRSTYIRRHTPHLH*YNETLYI*LFEGVLL*CLGEEE 299
Query: 1694 AFIAISAVHDGLCGAHQAGIKMKWILFRQGMYWPT--IMKDCMEYAKRCQDCQRHAGIQH 1751
A H +CG+H++ K+ + + R G YW T ++K + A
Sbjct: 298 TIQAFQ*AHSRVCGSHKS--KLYFHIKRMGYYWNT*IMLKGAL-----------LANFIQ 158
Query: 1752 VPASELHSIIKPWPFRGWALDLIGEINPCSSRQH 1785
P LH I F W L++ G + P SS H
Sbjct: 157 QPPEVLHPTITS*LFESWELNVFG-LFPKSSGGH 59
Score = 26.6 bits (57), Expect(2) = 2e-06
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = -1
Query: 1787 YIIVAIDYFTKWVEAIPL 1804
YI+ A+ YF KWVE + L
Sbjct: 54 YILAAVYYF*KWVEVVAL 1
>TC83629 weakly similar to GP|6692261|gb|AAF24611.1| putative RNase H
{Arabidopsis thaliana}, partial (21%)
Length = 1071
Score = 51.2 bits (121), Expect = 4e-06
Identities = 33/92 (35%), Positives = 44/92 (46%), Gaps = 4/92 (4%)
Frame = +2
Query: 1520 SNNEAEYEALTSGLEILIALGAKNVVVKGDSELVIKQLTKEYKCISENLARY*TKASNLL 1579
+ AEY AL GL+ G K V KGDSELVI Q+ +K E+L + +A L
Sbjct: 674 TKESAEYRALLLGLKHASMKGFKYVTAKGDSELVINQILDPWKIKDEHLKKLCAEALELS 853
Query: 1580 AKFDEARLGHVSRVDN----QEANELAQIASG 1607
F R+ H+SR N + AN + G
Sbjct: 854 DNFHSFRIQHISRERNYGAVRNANRAINLTDG 949
>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
melanogaster}, partial (20%)
Length = 192
Score = 47.4 bits (111), Expect = 6e-05
Identities = 22/57 (38%), Positives = 36/57 (62%)
Frame = +1
Query: 1352 ATDGTIGSMLAQEDEDSKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYI 1408
A D IG+ L+Q+DE++ E I Y SR+L AE YT++E+ CL ++ ++Y+
Sbjct: 1 APDWGIGAGLSQKDEENHEHPIAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYL 171
>TC91935
Length = 1144
Score = 40.8 bits (94), Expect = 0.006
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +3
Query: 1367 DSKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKY 1406
D + A +YLS +L D T+YT I+KLCL ++C + Y
Sbjct: 984 DGTKIAAYYLSWILKDVGTKYTHIDKLCLSFLYACNNISY 1103
>TC91086
Length = 697
Score = 38.5 bits (88), Expect = 0.027
Identities = 13/22 (59%), Positives = 21/22 (95%)
Frame = -1
Query: 1073 FIRTARYVDWLANVVPVIKKNG 1094
FI+T+RY+ WL+N++P+IKK+G
Sbjct: 676 FIQTSRYIKWLSNILPIIKKHG 611
>BG644740 similar to PIR|A84460|A84 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 754
Score = 36.2 bits (82), Expect = 0.14
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -1
Query: 1089 VIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVD 1124
V KK+G R+CID+R N T K++Y +P + + D
Sbjct: 223 VRKKDGYFRMCIDYRQFNKVTTKNKYPLPRIDNLFD 116
>BG454871 weakly similar to GP|10140673|g putative gag-pol polyprotein {Oryza
sativa (japonica cultivar-group)}, partial (7%)
Length = 674
Score = 35.0 bits (79), Expect = 0.30
Identities = 26/97 (26%), Positives = 41/97 (41%), Gaps = 8/97 (8%)
Frame = +2
Query: 1850 GIKLLTSTPYYAQANGQVEAANKTLISLIKKHVGRKPKNWHQTLGQVLWAYRNSPKESTG 1909
G L S+ Y+ ++GQ EA NK ++ + P W + + Y S S
Sbjct: 65 GTILTMSSAYHP*SDGQSEALNKGXEMYLRCLMFTDPLKWSKAFPWAEYWYNTSYNISAA 244
Query: 1910 ATPFRLAYGQEAVLPVE--------VYLQSCRIQRQE 1938
TPF+ YG++ + + LQS QR+E
Sbjct: 245 MTPFKALYGRDLSMLIRSKGSSKDTADLQSQLAQREE 355
>AL374389
Length = 335
Score = 32.3 bits (72), Expect = 2.0
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 3/106 (2%)
Frame = -1
Query: 1058 LVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMP 1117
++ +K+ I ++RC F + RY+DW A VC+ T KD ++P
Sbjct: 296 II*LKKNIVHIVRCMFWNSKRYIDWPA----------LT*VCV----XPGXTAKDRENLP 159
Query: 1118 IAEMMVDSAAGHEYLS--LLDGYSGYNQIFIAEED-VSKTAFRCPG 1160
G + L + GY + I E + AF CPG
Sbjct: 158 FPTAKAPENQGDKTLKFYVYGQVLGYRETKIPREG*LQLEAFSCPG 21
>TC78992 similar to GP|20466530|gb|AAM20582.1 protein kinase-like protein
{Arabidopsis thaliana}, partial (73%)
Length = 1801
Score = 30.4 bits (67), Expect = 7.4
Identities = 21/73 (28%), Positives = 36/73 (48%), Gaps = 4/73 (5%)
Frame = -1
Query: 1991 DYVWKVVLPINKKDKRYRKWVPNWEGPFTVEKVLVNNAYSIKE----LGGNRQMTINGKY 2046
+Y+++V LP +K R ++P E PF + +L + + I + G T+N K
Sbjct: 547 NYIYQVCLPTKSHEKVIRFYIP-MEEPFRMH-ILYSGHHLISQHQDSFEGEFSSTVNKKI 374
Query: 2047 LKTYKPTLHEINI 2059
LKT +H +I
Sbjct: 373 LKTRAQQIHNKHI 335
>TC87899 phosphatidylinositol 3-kinase [Medicago truncatula]
Length = 3083
Score = 30.0 bits (66), Expect = 9.7
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -2
Query: 1626 NPSDLDILVIDNMAPND-WRKP 1646
NP+D DI VI N+ PND W +P
Sbjct: 2578 NPTDTDIRVISNIEPNDEWSQP 2513
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.334 0.144 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,861,786
Number of Sequences: 36976
Number of extensions: 878655
Number of successful extensions: 6626
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 3579
Number of HSP's successfully gapped in prelim test: 339
Number of HSP's that attempted gapping in prelim test: 2904
Number of HSP's gapped (non-prelim): 4227
length of query: 2064
length of database: 9,014,727
effective HSP length: 111
effective length of query: 1953
effective length of database: 4,910,391
effective search space: 9589993623
effective search space used: 9589993623
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0269b.2