TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0269b.11
         (146 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC87006 homologue to SP|P06669|CYF_VICFA Apocytochrome F precurs...   239  3e-64
TC76888 similar to PIR|D75542|D75542 hypothetical protein - Dein...    27  2.2
TC79218 similar to SP|P45432|CSN1_ARATH COP9 signalosome complex...    27  2.9
BQ752111 similar to PIR|JQ2282|JQ22 negatively phytochrome regul...    26  5.0
BQ153879 similar to PIR|D86412|D864 protein F1K23.6 [imported] -...    25  8.5
TC79942 similar to GP|8927657|gb|AAF82148.1| EST gb|N38213 comes...    25  8.5
BQ143774                                                               25  8.5

>TC87006 homologue to SP|P06669|CYF_VICFA Apocytochrome F precursor. [Broad
           bean] {Vicia faba}, partial (78%)
          Length = 1548

 Score =  239 bits (610), Expect = 3e-64
 Identities = 114/128 (89%), Positives = 123/128 (96%)
 Frame = +1

Query: 19  KRGALNVGAVLILPEGFELAPTDRISPEIKEKMGNLSFQSYRPTKKNILVVGPVPGQKYS 78
           K+GALNVGAVLILPEGFELAP DRISPE+KEK+GNLSFQSYRPTKKNILVVGPVPG+KYS
Sbjct: 97  KKGALNVGAVLILPEGFELAPPDRISPEVKEKIGNLSFQSYRPTKKNILVVGPVPGKKYS 276

Query: 79  EITFPILSPDPATNRDVNFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATKSGIINKIIR 138
           EITFPILSPDPAT RDV+FLKYPIYVGGNRGRGQIYPDGSKSNNNVYNAT +GI+NKIIR
Sbjct: 277 EITFPILSPDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATATGIVNKIIR 456

Query: 139 KDKGGIHL 146
           K+KGG  +
Sbjct: 457 KEKGGYEI 480


>TC76888 similar to PIR|D75542|D75542 hypothetical protein - Deinococcus
            radiodurans (strain R1), partial (57%)
          Length = 1749

 Score = 27.3 bits (59), Expect = 2.2
 Identities = 13/16 (81%), Positives = 13/16 (81%)
 Frame = +2

Query: 1    AVVRKVDLFGNLRILA 16
            A VRKVDLFGN RI A
Sbjct: 1622 AAVRKVDLFGNPRIYA 1669


>TC79218 similar to SP|P45432|CSN1_ARATH COP9 signalosome complex subunit 1
           (CSN complex subunit 1) (COP11 protein) (FUSCA protein
           FUS6)., partial (90%)
          Length = 1746

 Score = 26.9 bits (58), Expect = 2.9
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
 Frame = +1

Query: 40  TDRISPEIKEKM------GNLSFQSYRPTKKNILVVGPVPGQKYSEITFPILSPDPAT 91
           TD + P I  K+       NL  + Y+   +  L  GP  G  Y+E+   I + D AT
Sbjct: 712 TDALDPIITSKLRCAAGLANLEAKKYKLAARKFLEAGPELGSTYNEV---IAAQDVAT 876


>BQ752111 similar to PIR|JQ2282|JQ22 negatively phytochrome regulated protein
           I - swollen duckweed, partial (17%)
          Length = 737

 Score = 26.2 bits (56), Expect = 5.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 14  ILANGKRGALNVGAVLILPEGFELAPTDRISPEIKEKMG 52
           +L   + GAL V ++++ P   + AP D IS  + +  G
Sbjct: 457 LLGGVEAGALRVRSLILTPAALQWAPVDIISVHLADAHG 573


>BQ153879 similar to PIR|D86412|D864 protein F1K23.6 [imported] - Arabidopsis
           thaliana, partial (6%)
          Length = 487

 Score = 25.4 bits (54), Expect = 8.5
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -3

Query: 45  PEIKEKMGNLSFQSYRPTKKNILVVGPVPGQKYSEITFPILSPDPATNRDVNFLKY 100
           P I      L F   R +KKNI ++  +  +++      +L P+P  N+ ++  +Y
Sbjct: 464 P*I*HDCSGLQFGKSRQSKKNIYMLVRIREREFLPKLHSLLLPNPMKNKSISAGQY 297


>TC79942 similar to GP|8927657|gb|AAF82148.1| EST gb|N38213 comes from this
           gene. {Arabidopsis thaliana}, partial (9%)
          Length = 879

 Score = 25.4 bits (54), Expect = 8.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
 Frame = +1

Query: 39  PTDRISPEIKEKMGNLSFQ------SYRPTKKNIL 67
           P   ISP +KEK+G+   Q      +YRP K + L
Sbjct: 715 PKSNISPCLKEKLGSCEKQIINCINTYRPNKMSSL 819


>BQ143774 
          Length = 743

 Score = 25.4 bits (54), Expect = 8.5
 Identities = 12/27 (44%), Positives = 16/27 (58%)
 Frame = +1

Query: 30  ILPEGFELAPTDRISPEIKEKMGNLSF 56
           +L  G +L  T  +SPE +EKM N  F
Sbjct: 661 LLKFGIKLPGTGWVSPETQEKMANRPF 741


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.317    0.141    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,682,271
Number of Sequences: 36976
Number of extensions: 46100
Number of successful extensions: 221
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of query: 146
length of database: 9,014,727
effective HSP length: 87
effective length of query: 59
effective length of database: 5,797,815
effective search space: 342071085
effective search space used: 342071085
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)