BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0269a.4
(70 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL371607 GP|13447811|gb plasma membrane integral protein ZmPIP2-... 31 0.10
AL382044 30 0.18
BE203393 homologue to GP|6469135|emb| putative water channel pro... 30 0.18
AL369775 GP|13447811|gb plasma membrane integral protein ZmPIP2-... 30 0.18
AL382124 30 0.18
AL378268 GP|13447811|gb plasma membrane integral protein ZmPIP2-... 30 0.18
AL371976 homologue to GP|17025878|gb| aquaporin {Medicago trunca... 30 0.18
AL370839 GP|17025878|gb aquaporin {Medicago truncatula}, partial... 30 0.18
TC85263 homologue to GP|5139539|emb|CAB45651.1 putative plasma m... 30 0.18
BG454712 similar to GP|6469135|emb| putative water channel prote... 30 0.18
AL368474 GP|17025878|gb aquaporin {Medicago truncatula}, partial... 30 0.18
AL379275 homologue to GP|6469135|emb| putative water channel pro... 30 0.18
AJ500598 30 0.18
BG583971 homologue to GP|6469135|emb putative water channel prot... 30 0.18
AL366443 30 0.18
AL374258 GP|17025878|gb aquaporin {Medicago truncatula}, partial... 30 0.18
BG453920 similar to GP|6469135|emb| putative water channel prote... 30 0.18
BF521341 homologue to GP|6469135|emb| putative water channel pro... 30 0.18
BI272686 30 0.18
AL367790 30 0.18
>AL371607 GP|13447811|gb plasma membrane integral protein ZmPIP2-7 {Zea
mays}, partial (7%)
Length = 432
Score = 30.8 bits (68), Expect = 0.10
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN+ ++ Y EN K T++ +HP
Sbjct: 406 QEKFEKGQRIHKTENKGNI*ELNTYIENKNEKKTQKGYKIHP 281
>AL382044
Length = 286
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 261 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 136
>BE203393 homologue to GP|6469135|emb| putative water channel protein
{Cicer arietinum}, partial (30%)
Length = 581
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 23 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 148
>AL369775 GP|13447811|gb plasma membrane integral protein ZmPIP2-7 {Zea
mays}, partial (8%)
Length = 487
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 409 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 284
>AL382124
Length = 246
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 26 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 151
>AL378268 GP|13447811|gb plasma membrane integral protein ZmPIP2-7 {Zea
mays}, partial (9%)
Length = 442
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 417 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 292
>AL371976 homologue to GP|17025878|gb| aquaporin {Medicago truncatula},
partial (13%)
Length = 487
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 461 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 336
>AL370839 GP|17025878|gb aquaporin {Medicago truncatula}, partial (11%)
Length = 527
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 442 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 317
>TC85263 homologue to GP|5139539|emb|CAB45651.1 putative plasma membrane
intrinsic protein {Pisum sativum}, complete
Length = 1359
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 1241 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 1116
>BG454712 similar to GP|6469135|emb| putative water channel protein {Cicer
arietinum}, partial (32%)
Length = 632
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 50 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 175
>AL368474 GP|17025878|gb aquaporin {Medicago truncatula}, partial (10%)
Length = 523
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 426 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 301
>AL379275 homologue to GP|6469135|emb| putative water channel protein {Cicer
arietinum}, partial (19%)
Length = 506
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 480 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 355
>AJ500598
Length = 334
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 52 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 177
>BG583971 homologue to GP|6469135|emb putative water channel protein {Cicer
arietinum}, partial (42%)
Length = 808
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 640 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 515
>AL366443
Length = 339
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 314 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 189
>AL374258 GP|17025878|gb aquaporin {Medicago truncatula}, partial (11%)
Length = 471
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 446 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 321
>BG453920 similar to GP|6469135|emb| putative water channel protein {Cicer
arietinum}, partial (24%)
Length = 561
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 50 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 175
>BF521341 homologue to GP|6469135|emb| putative water channel protein
{Cicer arietinum}, partial (33%)
Length = 605
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 27 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 152
>BI272686
Length = 206
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 157 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 32
>AL367790
Length = 367
Score = 30.0 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 24 QEKLEK-LKVKSTTEKGNMGNIHIYDENTIRKHTEQMNYLHP 64
QEK EK ++ T KGN ++ Y EN K T++ +HP
Sbjct: 345 QEKFEKGQRIHKTENKGNT*ELNTYIENKNEKKTQKGYKIHP 220
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.311 0.130 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,951,504
Number of Sequences: 36976
Number of extensions: 18494
Number of successful extensions: 144
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of query: 70
length of database: 9,014,727
effective HSP length: 46
effective length of query: 24
effective length of database: 7,313,831
effective search space: 175531944
effective search space used: 175531944
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0269a.4