BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0265.9
(456 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW686630 similar to GP|9454542|gb| Unknown protein {Arabidopsis ... 107 7e-24
AW560705 similar to PIR|D86469|D86 protein F12K21.12 [imported] ... 90 2e-18
TC82023 similar to PIR|D86469|D86469 protein F12K21.12 [imported... 85 5e-17
CB893779 similar to GP|10177269|db gb|AAC32911.1~gene_id:MJB21.3... 61 8e-10
CB892194 similar to GP|3461817|gb|A unknown protein {Arabidopsis... 53 3e-07
BQ148194 homologue to GP|17064856|gb| Unknown protein {Arabidops... 45 6e-05
TC78573 similar to GP|20197309|gb|AAC63626.2 unknown protein {Ar... 30 1.5
BI271791 homologue to SP|Q8UVR5|BA1A_ ATP-utilizing chromatin as... 30 2.5
TC78706 similar to PIR|B85344|B85344 hypothetical protein AT4g29... 29 4.3
TC85931 similar to GP|10177452|dbj|BAB10843. hypersensitive-indu... 29 4.3
TC79331 similar to GP|10798760|dbj|BAB16432. WRKY transcription ... 28 5.6
BM780181 28 7.4
TC88242 similar to GP|15100049|gb|AAK84220.1 transcription facto... 28 7.4
TC78586 similar to PIR|T01041|T01041 hypothetical protein YUP8H1... 28 7.4
BG587776 weakly similar to PIR|F86242|F86 unknown protein 98896... 28 9.6
TC85932 homologue to GP|10177452|dbj|BAB10843. hypersensitive-in... 28 9.6
TC77994 weakly similar to PIR|T39903|T39903 serine-rich protein ... 28 9.6
TC80007 28 9.6
TC90445 homologue to PIR|C84507|C84507 hypothetical protein At2g... 28 9.6
CA920590 homologue to GP|20197033|gb expressed protein {Arabidop... 28 9.6
>AW686630 similar to GP|9454542|gb| Unknown protein {Arabidopsis thaliana},
partial (34%)
Length = 544
Score = 107 bits (268), Expect = 7e-24
Identities = 50/144 (34%), Positives = 90/144 (61%)
Frame = +3
Query: 147 FPISDSDRIAMEKCKNVVVVSAIFNDHDKIRQPKGLGSKTLENVCFFIFIDDITLKRLEH 206
F + D + +++ +++V SAIF ++D I+QP+ + + +N+ F++FID+ T + +
Sbjct: 42 FDFDEEDLLELDQYHDIIVASAIFGNYDVIQQPRNISKQARKNIPFYMFIDEETEMYMRN 221
Query: 207 HDLISRKSSEYKIGVWRVVKVSKEYLYLNPAMNGVIPKYLVHRLFPNSQFSIWIDAKLKL 266
++ S ++G+WR++ V + Y + NG IPK L+HR+FPN ++SIWID KL+L
Sbjct: 222 ASILD---SRRRVGLWRIIVV-RNIPYADSRRNGKIPKLLLHRIFPNIRYSIWIDGKLEL 389
Query: 267 MVDPLLLIHSLVISENADMAISKH 290
+ DP ++ + NA AIS+H
Sbjct: 390 VKDPYQILERFLWRPNATFAISRH 461
>AW560705 similar to PIR|D86469|D86 protein F12K21.12 [imported] -
Arabidopsis thaliana, partial (23%)
Length = 497
Score = 89.7 bits (221), Expect = 2e-18
Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 7/165 (4%)
Frame = +1
Query: 252 PNSQFSIWIDAKLKLMVDPLLLIHSLVISENADMAISKHPFYVHTMEEAMATARWKKWWD 311
P + SIW+ +KL+L +DPLL++ + + + AIS H + H + E +A + ++
Sbjct: 1 PCALHSIWLASKLRLQLDPLLILEYFLWRKGYEFAISNH-YDRHCVWEEVAQNKKLNKYN 177
Query: 312 INALKMQMETYCENGLQPWNPSKLPYV--SDVPDSALILRKHGLGSNLFSCLVFNELEAF 369
+ Q Y +GLQ +N S L + S+VP+ + I+ H SNLF+CL FNE+E F
Sbjct: 178 HTVIDQQFAFYRADGLQKFNASDLNKLLPSNVPEGSFIIMAHTPMSNLFNCLWFNEVERF 357
Query: 370 NPRDQLAFAFV-----RDNMNPKLKLNMFEVEVFEQVTMEFRHNL 409
PRDQL+FA+ R N + LNMF+ + F H +
Sbjct: 358 TPRDQLSFAYTYQKLRRMNPDKPFHLNMFKDCERRHMAKLFHHRM 492
>TC82023 similar to PIR|D86469|D86469 protein F12K21.12 [imported] -
Arabidopsis thaliana, partial (17%)
Length = 389
Score = 85.1 bits (209), Expect = 5e-17
Identities = 48/126 (38%), Positives = 77/126 (61%), Gaps = 2/126 (1%)
Frame = +3
Query: 149 ISDSDRIAMEKCKNVVVVSAIFNDHDKIRQP--KGLGSKTLENVCFFIFIDDITLKRLEH 206
+S+ D + +C ++ V+S IF + D++R P K + + +NVCF +F D+IT++ L
Sbjct: 24 MSEDDESYISRC-HIAVISCIFGNSDRLRTPATKTISRLSRKNVCFVMFTDEITVRTLTS 200
Query: 207 HDLISRKSSEYKIGVWRVVKVSKEYLYLNPAMNGVIPKYLVHRLFPNSQFSIWIDAKLKL 266
+ IG W++V V K Y + G IPK L HRLFP++++SIW+D+KL+L
Sbjct: 201 EGHPPDRMGF--IGFWKLVVV-KNLPYDDMRRVGKIPKLLAHRLFPSARYSIWLDSKLRL 371
Query: 267 MVDPLL 272
+DPLL
Sbjct: 372 QLDPLL 389
>CB893779 similar to GP|10177269|db gb|AAC32911.1~gene_id:MJB21.3~similar to
unknown protein {Arabidopsis thaliana}, partial (19%)
Length = 932
Score = 61.2 bits (147), Expect = 8e-10
Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Frame = +1
Query: 117 FGGNLSTHLRFSYFDHQNDSTEVPCGFFKK---FPISDSDRIAMEKCKNVVVVSAIFNDH 173
F GN + R F+ + ++T CGF+ F ISD D+ M+ CK VVV + F
Sbjct: 571 FTGNQTFEERDRSFEVK-ETTTAHCGFYSANGGFRISDKDKSFMQGCK-VVVSTCAFGGG 744
Query: 174 DKIRQPKGLGSKTLENVCFFIFIDDITLKRLEHHDLISRKSSEYK-IGVWRVVKV 227
D + QP G+ +L+ VC+ F D+ITLK E L+ R+ + +G WRV+ V
Sbjct: 745 DDLYQPIGMSEASLKKVCYVAFWDEITLKAQE---LVGRRVGDNGFVGKWRVIVV 900
>CB892194 similar to GP|3461817|gb|A unknown protein {Arabidopsis thaliana},
partial (19%)
Length = 741
Score = 52.8 bits (125), Expect = 3e-07
Identities = 28/69 (40%), Positives = 41/69 (58%)
Frame = +3
Query: 188 ENVCFFIFIDDITLKRLEHHDLISRKSSEYKIGVWRVVKVSKEYLYLNPAMNGVIPKYLV 247
+NVCF +F+DD TL +L + IG+W+VV V + Y + G +PK+L
Sbjct: 543 DNVCFVMFLDDQTLSKLSSEG--NPPDERGYIGLWKVVVV-ENLPYEDMRRTGKVPKFLS 713
Query: 248 HRLFPNSQF 256
HRLFPNS++
Sbjct: 714 HRLFPNSKY 740
>BQ148194 homologue to GP|17064856|gb| Unknown protein {Arabidopsis
thaliana}, partial (8%)
Length = 673
Score = 45.1 bits (105), Expect = 6e-05
Identities = 23/48 (47%), Positives = 32/48 (65%), Gaps = 2/48 (4%)
Frame = +2
Query: 348 LRKHGLGSNLFSCLVFNELEAFNPRDQLAFAFVRDNMNPKL--KLNMF 393
+R+H SNLF+CL FNE++ F RDQ++F+ VRD K+ NMF
Sbjct: 2 IREHVPISNLFTCLWFNEVDRFTSRDQISFSTVRDKFLSKVDFHFNMF 145
>TC78573 similar to GP|20197309|gb|AAC63626.2 unknown protein {Arabidopsis
thaliana}, partial (31%)
Length = 2016
Score = 30.4 bits (67), Expect = 1.5
Identities = 26/106 (24%), Positives = 45/106 (41%), Gaps = 1/106 (0%)
Frame = +2
Query: 47 SPFDPIQTSLISYPSSYGEH-KYAVSTTRSSCSSPVLFSDYRDVLKEIKNFRKSSTSSTK 105
S F+ + S I+YP G+H +A T SS S P + Y
Sbjct: 566 SSFEEGEFSSIAYPDIIGQHAAFAEHTAVSSASHPCPYVAY------------------- 688
Query: 106 MLGYMHGNADSFGGNLSTHLRFSYFDHQNDSTEVPCGFFKKFPISD 151
G +H ++ + GG +S F++++ + +E+P + FP D
Sbjct: 689 -FGPIHPSSSNSGGAVSEAPNFNHWNGSSVPSEMPASY--TFPAVD 817
>BI271791 homologue to SP|Q8UVR5|BA1A_ ATP-utilizing chromatin assembly and
remodely factor 1 (xACF1) (Fragment). [African clawed
frog], partial (2%)
Length = 689
Score = 29.6 bits (65), Expect = 2.5
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = -2
Query: 13 IQSKLLCFSLFYLFTSLFLA-LYTISFQSKCLFRSSPFDPIQTSLIS---YPSS 62
I +K+LC + F+LF L A +++ + CL S P ++L S +PS+
Sbjct: 679 ISNKMLCLNQFFLFMFLLTASALXLTYSADCLVFSEPLSETLSALASASAFPSA 518
>TC78706 similar to PIR|B85344|B85344 hypothetical protein AT4g29490
[imported] - Arabidopsis thaliana, partial (63%)
Length = 893
Score = 28.9 bits (63), Expect = 4.3
Identities = 14/39 (35%), Positives = 18/39 (45%), Gaps = 6/39 (15%)
Frame = +3
Query: 291 PFYVHTMEEAMATARWK--KW----WDINALKMQMETYC 323
PFY M+E + T RWK W W++N M C
Sbjct: 762 PFYTTGMQELLMTRRWKMETWHCLIWELNTTSMGRNITC 878
>TC85931 similar to GP|10177452|dbj|BAB10843. hypersensitive-induced
response protein {Arabidopsis thaliana}, partial (71%)
Length = 779
Score = 28.9 bits (63), Expect = 4.3
Identities = 24/74 (32%), Positives = 32/74 (42%), Gaps = 6/74 (8%)
Frame = -1
Query: 16 KLLCFSLFYLFTSLFLALYTISFQSKCLFRSSPFDPIQTSLISYP------SSYGEHKYA 69
K+ S F L +L LA ISF ++ + S I ISYP SS +A
Sbjct: 716 KIFSASAFSLAANLILAAALISFIARFTWTSGSISVISV*TISYP*ADIAFSSSSSTAFA 537
Query: 70 VSTTRSSCSSPVLF 83
+S S SS + F
Sbjct: 536 ISFFCSKVSSKLSF 495
>TC79331 similar to GP|10798760|dbj|BAB16432. WRKY transcription factor
Nt-SubD48 {Nicotiana tabacum}, partial (51%)
Length = 1336
Score = 28.5 bits (62), Expect = 5.6
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = +3
Query: 6 TISKPLIIQ---SKLLCFSLFYLFTSLFLALYTISFQSKCLFRSSPFDPIQTSLISYPSS 62
T+ +P+I + SK L FS S F++ T +K SSP Q + +S+ SS
Sbjct: 543 TLHRPIIKRNDSSKTLNFSYSSAGNS-FISSLTGDDNNKQPSMSSPAGAFQITNLSHVSS 719
Query: 63 YGEHKYAVSTTRSSCSSPVLFS 84
G+ + S+ + CSS L S
Sbjct: 720 VGKPPLSSSSLKRKCSSETLGS 785
>BM780181
Length = 513
Score = 28.1 bits (61), Expect = 7.4
Identities = 22/70 (31%), Positives = 33/70 (46%), Gaps = 6/70 (8%)
Frame = +3
Query: 5 ITISKPLIIQSKL------LCFSLFYLFTSLFLALYTISFQSKCLFRSSPFDPIQTSLIS 58
I SK L+ KL + F +F L T+ A + ++ K +SPFD +S S
Sbjct: 153 IRTSKKLVCVIKLFRWNY*ISFQIFNLITTFTHASVSFNWVKK----NSPFDIHHSSYKS 320
Query: 59 YPSSYGEHKY 68
+PS Y H +
Sbjct: 321 FPSFYACHLF 350
>TC88242 similar to GP|15100049|gb|AAK84220.1 transcription factor bZIP29
{Arabidopsis thaliana}, partial (39%)
Length = 1930
Score = 28.1 bits (61), Expect = 7.4
Identities = 15/49 (30%), Positives = 26/49 (52%)
Frame = +1
Query: 11 LIIQSKLLCFSLFYLFTSLFLALYTISFQSKCLFRSSPFDPIQTSLISY 59
++I L + F++FT +FL+ Y F S+CL S ++ +SY
Sbjct: 1669 ILIYLVLFHCTQFHIFTEVFLSCYGRKFDSQCLSSSVTKSIYKS*FLSY 1815
>TC78586 similar to PIR|T01041|T01041 hypothetical protein YUP8H12R.24 -
Arabidopsis thaliana, partial (38%)
Length = 2831
Score = 28.1 bits (61), Expect = 7.4
Identities = 17/46 (36%), Positives = 23/46 (49%), Gaps = 1/46 (2%)
Frame = -2
Query: 11 LIIQSKLLCFSLFYL-FTSLFLALYTISFQSKCLFRSSPFDPIQTS 55
L ++S L CFS + T L + S+Q CL PF +QTS
Sbjct: 1372 LSLKSTLACFSFCHFQATDLMPPYFFFSYQISCL*IFYPFPSVQTS 1235
>BG587776 weakly similar to PIR|F86242|F86 unknown protein 98896-95855
[imported] - Arabidopsis thaliana, partial (23%)
Length = 608
Score = 27.7 bits (60), Expect = 9.6
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = -2
Query: 20 FSLFYLFTSLFLALYTIS 37
F +F+LFTSLFL L++++
Sbjct: 523 FKIFFLFTSLFLLLFSLN 470
>TC85932 homologue to GP|10177452|dbj|BAB10843. hypersensitive-induced
response protein {Arabidopsis thaliana}, partial (98%)
Length = 1555
Score = 27.7 bits (60), Expect = 9.6
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Frame = -2
Query: 16 KLLCFSLFYLFTSLFLALYTISFQSKCLFRSSPFDPIQTSLISYP------SSYGEHKYA 69
K+ S F L +L LA ISF ++ + S I ISYP SS +A
Sbjct: 819 KIFSASAFSLAANLILAAALISFIARFTWSSGSISVISV*TISYP*ADIAFSSSSSTAFA 640
Query: 70 VSTTRSSCSS 79
+S S SS
Sbjct: 639 ISFFCSKASS 610
>TC77994 weakly similar to PIR|T39903|T39903 serine-rich protein - fission
yeast (Schizosaccharomyces pombe), partial (5%)
Length = 1571
Score = 27.7 bits (60), Expect = 9.6
Identities = 21/51 (41%), Positives = 24/51 (46%), Gaps = 2/51 (3%)
Frame = +1
Query: 35 TISFQSKCLFRSSPFDPIQTSLISYPSSYGEHKYAVSTT--RSSCSSPVLF 83
T+ FQS LF SS +S S S H A STT S SSP +F
Sbjct: 1267 TVFFQSSALFLSSDLSFSTSSSSSGGQSSFSHSLAFSTTVEVSGSSSPFVF 1419
>TC80007
Length = 1599
Score = 27.7 bits (60), Expect = 9.6
Identities = 17/49 (34%), Positives = 25/49 (50%)
Frame = -1
Query: 20 FSLFYLFTSLFLALYTISFQSKCLFRSSPFDPIQTSLISYPSSYGEHKY 68
F L +LF L ++ F+S C F++ PF SL S S +H+Y
Sbjct: 1263 FPLILQVRNLFSQLISLCFESLCFFKNFPF-----SLRSCDLSRLKHRY 1132
>TC90445 homologue to PIR|C84507|C84507 hypothetical protein At2g13370
[imported] - Arabidopsis thaliana, partial (29%)
Length = 1672
Score = 27.7 bits (60), Expect = 9.6
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 21 SLFYLFT-SLFLALYTISFQSKCLFRSSPFDPIQTSLISYPSSY 63
+L Y+ T FLA + ISF K LFRS D Q I SS+
Sbjct: 1546 NLIYIHT*ESFLAFFIISFFLKKLFRSKS*DCRQLVFIKVTSSF 1415
>CA920590 homologue to GP|20197033|gb expressed protein {Arabidopsis
thaliana}, partial (39%)
Length = 755
Score = 27.7 bits (60), Expect = 9.6
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -1
Query: 4 LITISKPLIIQSKLLCFSLFYLFTSLFLALYT 35
+I K I S LLC L+Y+F SLF ALY+
Sbjct: 587 VIDACKTCQILSWLLCL-LYYIFCSLFAALYS 495
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.322 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,137,230
Number of Sequences: 36976
Number of extensions: 244016
Number of successful extensions: 1463
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of query: 456
length of database: 9,014,727
effective HSP length: 99
effective length of query: 357
effective length of database: 5,354,103
effective search space: 1911414771
effective search space used: 1911414771
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0265.9