TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0265.5
         (404 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC87818 similar to GP|20197082|gb|AAC26698.2 putative katanin {A...   418  e-117
TC87817 homologue to GP|20161224|dbj|BAB90151. katanin p60 subun...   326  1e-89
TC79040 homologue to PIR|F84674|F84674 probable AAA-type ATPase ...   258  3e-69
TC85904 similar to PIR|F84674|F84674 probable AAA-type ATPase [i...   252  2e-67
AW696218 homologue to PIR|B96835|B96 CAD ATPase (AAA1)  35570-33...   230  6e-61
BG644335 similar to GP|18461184|db putative katanin {Oryza sativ...   171  2e-59
TC78210 similar to GP|6056413|gb|AAF02877.1| Unknown protein {Ar...   202  1e-52
TC81332 similar to GP|15810167|gb|AAL06985.1 At1g64110/F22C12_22...   200  9e-52
TC86562 similar to GP|21553404|gb|AAM62497.1 26S proteasome regu...   190  7e-49
TC88876 similar to PIR|G96537|G96537 hypothetical protein F2J10....   174  2e-47
TC85768 homologue to SP|P54774|CC48_SOYBN Cell division cycle pr...   177  8e-45
TC88085 similar to GP|20259341|gb|AAM13995.1 unknown protein {Ar...   171  5e-43
TC78797 similar to GP|15810167|gb|AAL06985.1 At1g64110/F22C12_22...   124  3e-40
TC86159 homologue to GP|21387177|gb|AAM47992.1 26S proteasome AA...   155  2e-38
TC85936 homologue to GP|13537115|dbj|BAB40755. AtSUG1 {Arabidops...   146  1e-35
TC77261 homologue to GP|8777330|dbj|BAA96920.1 26S proteasome AA...   145  3e-35
TC77012 homologue to SP|P54776|PRSA_LYCES 26S protease regulator...   142  2e-34
AW774182 homologue to PIR|F84674|F84 probable AAA-type ATPase [i...   142  3e-34
BF647954 homologue to GP|11094192|db 26S proteasome regulatory p...   139  1e-33
TC85744 homologue to PIR|T08959|T08959 proteinase homolog F19B15...   139  1e-33

>TC87818 similar to GP|20197082|gb|AAC26698.2 putative katanin {Arabidopsis
           thaliana}, partial (62%)
          Length = 984

 Score =  418 bits (1075), Expect = e-117
 Identities = 210/240 (87%), Positives = 223/240 (92%)
 Frame = +2

Query: 165 PPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDE 224
           P G  + MLAKAVATEC TTFFNISASS+ SKWRGDSEKLVKVLF+LARHHAP+TIFLDE
Sbjct: 5   PQGLERPMLAKAVATECNTTFFNISASSMFSKWRGDSEKLVKVLFELARHHAPATIFLDE 184

Query: 225 IDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLRRLE 284
           IDAIISQRGE RSEHEASRRLKTELLIQMDGL RTDELVFVLAATNLPWELDAAMLRRLE
Sbjct: 185 IDAIISQRGEGRSEHEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLRRLE 364

Query: 285 KRILVPLPEPEARVAMFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLR 344
           KRILVPLPEPEAR AMFEELLP QPDEE +PYDLLV++TEGYSGSDIRLLCKE AMQPLR
Sbjct: 365 KRILVPLPEPEARRAMFEELLPLQPDEEPMPYDLLVDRTEGYSGSDIRLLCKETAMQPLR 544

Query: 345 RLMSQLEQREDLVPEEELPKVGPIRPEDIQAALKNTRPSAHLHAHKYDKFNADYGSQILQ 404
           RLM+QLEQ  D+VPEEELPKVGP+ PED++AAL+NTRPSAHL AHKYD FNADYGSQILQ
Sbjct: 545 RLMTQLEQEPDVVPEEELPKVGPVVPEDVEAALRNTRPSAHLLAHKYDTFNADYGSQILQ 724


>TC87817 homologue to GP|20161224|dbj|BAB90151. katanin p60 subunit A 1-like
           {Oryza sativa (japonica cultivar-group)}, partial (25%)
          Length = 768

 Score =  326 bits (835), Expect = 1e-89
 Identities = 159/205 (77%), Positives = 176/205 (85%)
 Frame = +2

Query: 2   ADEEPMPTRWSFQDFKLYYDSKFGRKKVVQNGENADKAVGNGSSMSVVSNGNVHSKRSSD 61
           AD+EPMPTRWSF++FK YYD + GRKK+V+NGENA   V NG+S  + SNGN H K +SD
Sbjct: 140 ADDEPMPTRWSFEEFKKYYDVRLGRKKLVENGENA---VSNGNSSGIASNGNSHGKVTSD 310

Query: 62  MAIYEQLRSQGQNGIHTNDVSPNNMDERPQKSLLPPFESAEMRTLAESLSRDIIRGSPDV 121
            AIY+Q +SQGQN  HTN   PN +DE+P+KSLLPPFESAEMRTLAESLSRDIIRGSP+V
Sbjct: 311 RAIYDQFQSQGQNPTHTNGFGPNGVDEKPKKSLLPPFESAEMRTLAESLSRDIIRGSPNV 490

Query: 122 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 181
           KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC
Sbjct: 491 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 670

Query: 182 KTTFFNISASSVVSKWRGDSEKLVK 206
            TTFFNI +     KWR DS+KLVK
Sbjct: 671 NTTFFNIFSIVYCHKWRSDSKKLVK 745



 Score = 27.7 bits (60), Expect = 8.3
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 164 GPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLAR 213
           GP G  +  L + +       F   SASS+V+      +   KVLF+LAR
Sbjct: 618 GPQGLERQCLQRQLQLSATLHFLIFSASSIVTNGEVIQKN**KVLFELAR 767


>TC79040 homologue to PIR|F84674|F84674 probable AAA-type ATPase [imported]
           - Arabidopsis thaliana, partial (74%)
          Length = 1193

 Score =  258 bits (659), Expect = 3e-69
 Identities = 131/241 (54%), Positives = 175/241 (72%), Gaps = 1/241 (0%)
 Frame = +3

Query: 106 LAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP 165
           L   L   IIR  P+VKW  + GLE+AK+ L+EAV++P+K+P++FTG   PW+  LL+GP
Sbjct: 6   LRAGLISAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGP 185

Query: 166 PGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEI 225
           PGTGK+ LAKAVATE  +TFF+IS+S +VSKW G+SEKLV  LFQ+AR  APS IF+DEI
Sbjct: 186 PGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEI 365

Query: 226 DAIISQRGEARSEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLRRLEK 285
           D++  QRGE  +E EASRR+KTELL+QM G+   D+ V VLAATN P+ LD A+ RR +K
Sbjct: 366 DSLCGQRGEG-NESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDK 542

Query: 286 RILVPLPEPEARVAMFEELLPPQPDE-ESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLR 344
           RI +PLP+ +AR  MF+  L   P       Y+ L ++TEG+SGSDI +  K+V  +P+R
Sbjct: 543 RIYIPLPDLKARQHMFKVHLGDTPHNLTEKDYEYLASRTEGFSGSDISVCVKDVLFEPVR 722

Query: 345 R 345
           +
Sbjct: 723 K 725


>TC85904 similar to PIR|F84674|F84674 probable AAA-type ATPase [imported] -
           Arabidopsis thaliana, complete
          Length = 1793

 Score =  252 bits (644), Expect = 2e-67
 Identities = 126/241 (52%), Positives = 174/241 (71%), Gaps = 1/241 (0%)
 Frame = +2

Query: 106 LAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP 165
           L   L+  I+R  P+VKW  + GLE+AK+ L+EAV++P+K+P++FTG   PW+  LL+GP
Sbjct: 524 LRAGLNSAIVREKPNVKWNDVAGLESAKQSLQEAVILPVKFPQFFTGKRRPWRAFLLYGP 703

Query: 166 PGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEI 225
           PGTGK+ LAKAVATE  +TFF++S+S +VSKW G+SEKLV  LF++AR  APS IF+DEI
Sbjct: 704 PGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEI 883

Query: 226 DAIISQRGEARSEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLRRLEK 285
           D++   RGE  +E EASRR+KTELL+QM G+   D+ V VLAATN P+ LD A+ RR +K
Sbjct: 884 DSLCGTRGEG-NESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDK 1060

Query: 286 RILVPLPEPEARVAMFEELLPPQPDE-ESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLR 344
           RI +PLP+ +AR  MF+  L   P       ++ L  +TEG+SGSDI +  K+V  +P+R
Sbjct: 1061RIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARKTEGFSGSDIAVCVKDVLFEPVR 1240

Query: 345 R 345
           +
Sbjct: 1241K 1243


>AW696218 homologue to PIR|B96835|B96 CAD ATPase (AAA1)  35570-33019
           [imported] - Arabidopsis thaliana, partial (34%)
          Length = 556

 Score =  230 bits (587), Expect = 6e-61
 Identities = 109/185 (58%), Positives = 148/185 (79%), Gaps = 7/185 (3%)
 Frame = +3

Query: 108 ESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPG 167
           E L RD++  SP V+W+ + GL  AKRLL+EAVV+P+  P+YF G+  PWKG+L+FGPPG
Sbjct: 3   EMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPG 182

Query: 168 TGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDA 227
           TGKT+LAKAVATEC TTFFN+S++++ SKWRG+SE++V+ LF LAR +APSTIF+DEID+
Sbjct: 183 TGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDS 362

Query: 228 IISQRGEARSEHEASRRLKTELLIQMDGLTR-------TDELVFVLAATNLPWELDAAML 280
           + + RG A  EHE+SRR+K+ELL+Q+DG++        + +LV VLAATN PW++D A+ 
Sbjct: 363 LCNARG-ASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKLVMVLAATNFPWDIDEALR 539

Query: 281 RRLEK 285
           RRLEK
Sbjct: 540 RRLEK 554


>BG644335 similar to GP|18461184|db putative katanin {Oryza sativa (japonica
           cultivar-group)}, partial (41%)
          Length = 566

 Score =  171 bits (432), Expect(2) = 2e-59
 Identities = 83/112 (74%), Positives = 96/112 (85%)
 Frame = -3

Query: 272 PWELDAAMLRRLEKRILVPLPEPEARVAMFEELLPPQPDEESIPYDLLVNQTEGYSGSDI 331
           PWELDAAMLRRLEKRILVPLPE EAR  MFEELLP  P++  +PYDLLV +T+G+SGSDI
Sbjct: 384 PWELDAAMLRRLEKRILVPLPEAEARCGMFEELLPSLPEQAPLPYDLLVEKTKGFSGSDI 205

Query: 332 RLLCKEVAMQPLRRLMSQLEQREDLVPEEELPKVGPIRPEDIQAALKNTRPS 383
           RLLCKE AMQPLR LM++L++RE+LVPE+ELP VGPI   DI+ AL NTRPS
Sbjct: 204 RLLCKEAAMQPLRCLMAELDKREELVPEDELPNVGPITVTDIEMALMNTRPS 49



 Score = 76.6 bits (187), Expect(2) = 2e-59
 Identities = 40/49 (81%), Positives = 42/49 (85%)
 Frame = -1

Query: 212 ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTD 260
           ARHHAPSTIFLDEIDAIISQRGEARSEHE+SRRLKTE L   DG   +D
Sbjct: 566 ARHHAPSTIFLDEIDAIISQRGEARSEHESSRRLKTE-LAHTDGRFESD 423



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/26 (88%), Positives = 23/26 (88%)
 Frame = -2

Query: 246 KTELLIQMDGLTRTDELVFVLAATNL 271
           K  LLIQMDGL RTDELVFVLAATNL
Sbjct: 463 KQSLLIQMDGLNRTDELVFVLAATNL 386


>TC78210 similar to GP|6056413|gb|AAF02877.1| Unknown protein {Arabidopsis
           thaliana}, partial (23%)
          Length = 1254

 Score =  202 bits (515), Expect = 1e-52
 Identities = 111/242 (45%), Positives = 154/242 (62%), Gaps = 8/242 (3%)
 Frame = +3

Query: 137 KEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 194
           KE V++P+K P+ F    L  P KGILLFGPPGTGKTMLAKAVATE    F NIS SS+ 
Sbjct: 3   KELVMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 182

Query: 195 SKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 254
           SKW G+ EK VK +F LA   APS IF+DE+D+++ +R E   EHEA R++K E ++  D
Sbjct: 183 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR-ENPGEHEAMRKMKNEFMVNWD 359

Query: 255 GL-TRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARVAMFEELLPPQPDEES 313
           GL T+  E + VLAATN P++LD A++RRL +R++V LP+   R  +   +L  +     
Sbjct: 360 GLRTKEKERILVLAATNRPFDLDEAVIRRLPRRLMVDLPDAPNRGKILRVILAKEDLAAD 539

Query: 314 IPYDLLVNQTEGYSGSDIRLLCKEVAMQPLRRLMSQLEQREDLV-----PEEELPKVGPI 368
           +  + + N T+GYSGSD++ LC   A  P+R ++ + ++ + L      PE EL     I
Sbjct: 540 VDLEAIANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKDKSLALAENKPEPELCSSADI 719

Query: 369 RP 370
           RP
Sbjct: 720 RP 725


>TC81332 similar to GP|15810167|gb|AAL06985.1 At1g64110/F22C12_22 {Arabidopsis
            thaliana}, partial (39%)
          Length = 1514

 Score =  200 bits (508), Expect = 9e-52
 Identities = 103/225 (45%), Positives = 153/225 (67%), Gaps = 3/225 (1%)
 Frame = +1

Query: 121  VKWESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVA 178
            V +  I  L++ K  L+EAV++P++ P  F G  +L P KG+LLFGPPGTGKTMLAKA+A
Sbjct: 829  VTFSDIGALDDVKESLQEAVMLPLRRPDLFKGDGVLKPCKGVLLFGPPGTGKTMLAKAIA 1008

Query: 179  TECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGEARSE 238
             E   +F N+S S++ S W+G SEK V+ LF LA   AP+ IF+DE+D+++ QR   R E
Sbjct: 1009 NEAGASFINVSPSTITSMWQGQSEKNVRALFSLAAKVAPTIIFIDEVDSMLGQRSSTR-E 1185

Query: 239  HEASRRLKTELLIQMDG-LTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEAR 297
            H + RR+K E + + DG L++ DE + VLAATN+P++LD A++RR ++RI+V LP  + R
Sbjct: 1186 HSSMRRVKNEFMSRWDGLLSKPDEKITVLAATNMPFDLDEAIIRRFQRRIMVGLPSADNR 1365

Query: 298  VAMFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQP 342
              + + +L  +   E++ ++ L   TEGYSGSD++ LC   A +P
Sbjct: 1366 ETILKTILAKE-KSENMNFEELSTMTEGYSGSDLKNLCMTAAYRP 1497


>TC86562 similar to GP|21553404|gb|AAM62497.1 26S proteasome regulatory
           particle chain RPT6-like protein {Arabidopsis thaliana},
           partial (77%)
          Length = 1564

 Score =  190 bits (483), Expect = 7e-49
 Identities = 109/280 (38%), Positives = 167/280 (58%), Gaps = 3/280 (1%)
 Frame = +1

Query: 120 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAV 177
           DV+++SI GLE  K+ L E V++P++ P  F+   LL P KG+LL+GPPGTGKTMLAKA+
Sbjct: 394 DVEFDSIGGLETIKQTLFELVILPLQRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAI 573

Query: 178 ATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGEARS 237
           A E    F N+  S+++SKW GD++KLV  +F LA    PS IF+DE+D+ + QR    S
Sbjct: 574 AKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPSIIFIDEVDSFLGQR--RSS 747

Query: 238 EHEASRRLKTELLIQMDGL-TRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEA 296
           +HEA   +KTE +   DG  T     V VLAATN P ELD A+LRRL +   +  P+ + 
Sbjct: 748 DHEAVLNMKTEFMALWDGFATDQSARVMVLAATNRPSELDEAILRRLPQAFEIGYPDRKE 927

Query: 297 RVAMFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLRRLMSQLEQREDL 356
           R  + + +L  +  E++I +  +    +GY+GSD+  LCK+ A  P+R ++   +  E  
Sbjct: 928 RADILKVILKGEKVEDNIDFSYIAGLCKGYTGSDLFDLCKKAAYFPIREILHNEKNGEQS 1107

Query: 357 VPEEELPKVGPIRPEDIQAALKNTRPSAHLHAHKYDKFNA 396
                     P+   D++ AL  +R ++ + A++Y +  +
Sbjct: 1108CEPR------PLSQADLEKALSTSRKTS-VAANEYSRMTS 1206


>TC88876 similar to PIR|G96537|G96537 hypothetical protein F2J10.1 [imported]
            - Arabidopsis thaliana, partial (72%)
          Length = 1572

 Score =  174 bits (442), Expect(2) = 2e-47
 Identities = 91/199 (45%), Positives = 135/199 (67%), Gaps = 3/199 (1%)
 Frame = +2

Query: 110  LSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPG 167
            +S  +  G   VK++ I  LE+ K+ L+E V++P++ P+ F+   LL P KGILLFGPPG
Sbjct: 878  VSAVVAPGEIGVKFDDIGALEDVKKALQELVILPMRRPELFSHGNLLRPCKGILLFGPPG 1057

Query: 168  TGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDA 227
            TGKT+LAKA+ATE    F +++ S++ SKW GD+EKL K LF  A   AP  IF+DE+D+
Sbjct: 1058 TGKTLLAKALATEAGANFISVTGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDS 1237

Query: 228  IISQRGEARSEHEASRRLKTELLIQMDGL-TRTDELVFVLAATNLPWELDAAMLRRLEKR 286
            ++  RG A  EHEA+RR++ E +   DGL ++ ++ + +L ATN P++LD A++RRL +R
Sbjct: 1238 LLGARGGAH-EHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRR 1414

Query: 287  ILVPLPEPEARVAMFEELL 305
            I V LP+ E R+ +    L
Sbjct: 1415 IYVDLPDVENRMKILRIFL 1471



 Score = 32.3 bits (72), Expect(2) = 2e-47
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +1

Query: 316  YDLLVNQTEGYSGSDIRLLCKEVA 339
            YD L + TEGYSGSD++ LC   A
Sbjct: 1501 YDKLASLTEGYSGSDLKNLCVAAA 1572


>TC85768 homologue to SP|P54774|CC48_SOYBN Cell division cycle protein 48
            homolog (Valosin containing protein homolog) (VCP).
            [Soybean], partial (95%)
          Length = 2785

 Score =  177 bits (448), Expect = 8e-45
 Identities = 102/298 (34%), Positives = 170/298 (56%), Gaps = 12/298 (4%)
 Frame = +2

Query: 109  SLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPG 167
            S  R+ +   P+  W+ I GLEN KR L+E V  P+++P+ F    +SP KG+L +GPPG
Sbjct: 1490 SALRETVVEVPNCSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPG 1669

Query: 168  TGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDA 227
             GKT+LAKA+A EC+  F +I    +++ W G+SE  V+ +F  AR  AP  +F DE+D+
Sbjct: 1670 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDS 1849

Query: 228  IISQRGEARSE-HEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLR--RLE 284
            I +QRG +  +   A+ R+  +LL +MDG++   + VF++ ATN P  +D A+LR  RL+
Sbjct: 1850 IATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNRPDIIDPALLRPGRLD 2026

Query: 285  KRILVPLPEPEARVAMFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLR 344
            + I +PLP+ ++R  +F+  L   P  + +    L   T+G+SG+DI  +C+      +R
Sbjct: 2027 QLIYIPLPDEDSRHQIFKACLRKSPISKDVDIRALAKYTQGFSGADITEICQRACKYAIR 2206

Query: 345  RLMSQLEQRE-------DLVPEEELPKVGPIRPEDIQAALKNTRPS-AHLHAHKYDKF 394
              + +  ++E       + + E+   +V  I+    + ++K  R S +     KY  F
Sbjct: 2207 ENIEKDIEKERKRSENPEAMEEDIEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAF 2380



 Score =  152 bits (385), Expect = 2e-37
 Identities = 92/280 (32%), Positives = 157/280 (55%), Gaps = 3/280 (1%)
 Frame = +2

Query: 108 ESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPP 166
           E + R+      +V ++ + G+      ++E V +P+++P+ F  + + P KGILL+GPP
Sbjct: 668 EPIKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPP 847

Query: 167 GTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEID 226
           G+GKT++A+AVA E    FF I+   ++SK  G+SE  ++  F+ A  +APS IF+DEID
Sbjct: 848 GSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEID 1027

Query: 227 AIISQRGEARSEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLR--RLE 284
           +I  +R +   E E  RR+ ++LL  MDGL ++   V V+ ATN P  +D A+ R  R +
Sbjct: 1028SIAPKREKTHGEVE--RRIVSQLLTLMDGL-KSRAHVIVMGATNRPNSIDPALRRFGRFD 1198

Query: 285 KRILVPLPEPEARVAMFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLR 344
           + I + +P+   R+ +           E +  + +  +T GY G+D+  LC E A+Q +R
Sbjct: 1199REIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEKISKETHGYVGADLAALCTEAALQCIR 1378

Query: 345 RLMSQLEQREDLVPEEELPKVGPIRPEDIQAALKNTRPSA 384
             M  ++  ++ +  E L  +  +  E    AL ++ PSA
Sbjct: 1379EKMDVIDLEDETIDAEILNSMA-VTNEHFATALGSSNPSA 1495


>TC88085 similar to GP|20259341|gb|AAM13995.1 unknown protein {Arabidopsis
           thaliana}, partial (29%)
          Length = 1261

 Score =  171 bits (433), Expect = 5e-43
 Identities = 109/258 (42%), Positives = 151/258 (58%), Gaps = 4/258 (1%)
 Frame = +1

Query: 34  ENADKAVGNGSSMSVVSNGNVHSKRSSDMAIYEQLRSQGQNGIHTNDVSPNNMDERPQKS 93
           EN +K +G   S   + +    ++ S  +   E ++  G N +        N ++  +KS
Sbjct: 514 ENVEKIIGWAISYHFMHSSEASTEESKPVISAESIQ-YGFNILQ----GIQNENKSVKKS 678

Query: 94  LLPPFESAEMRTLAESLSRDIIRGSP-DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG 152
           L       E     + L  D+I  +   V +  I  LEN K  LKE V++P++ P+ F  
Sbjct: 679 LKDVVTENEFE---KKLLGDVIPPTDIGVSFNDIGALENVKDTLKELVMLPLQRPELFCK 849

Query: 153 --LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQ 210
             L  P KGILLFGPPGTGKTMLAKAVATE    F NIS SS+ SKW G+ EK VK +F 
Sbjct: 850 GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFS 1029

Query: 211 LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TRTDELVFVLAAT 269
           LA   APS IF+DE+D+++ +R E   EHEA R++K E ++  DGL T+  E V VLAAT
Sbjct: 1030LASKIAPSVIFVDEVDSMLGRR-ENPGEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAAT 1206

Query: 270 NLPWELDAAMLRRLEKRI 287
           N P++LD A++RRL +R+
Sbjct: 1207NRPFDLDEAVIRRLPRRL 1260


>TC78797 similar to GP|15810167|gb|AAL06985.1 At1g64110/F22C12_22 {Arabidopsis
            thaliana}, partial (74%)
          Length = 2270

 Score =  124 bits (312), Expect(2) = 3e-40
 Identities = 67/141 (47%), Positives = 91/141 (64%), Gaps = 1/141 (0%)
 Frame = +1

Query: 93   SLLPPFESAEMRTLAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG 152
            S +PP    E R   E +  + I    DV +  I  LE  K  L+E V++P++ P  FTG
Sbjct: 1633 SEVPPDNEFEKRIRPEVIPANEI----DVTFSDIGALEETKESLQELVMLPLRRPDLFTG 1800

Query: 153  -LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQL 211
             LL P +GILLFGPPGTGKTMLAKA+A E   +F N+S S++ SKW G+ EK V+ LF L
Sbjct: 1801 GLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTL 1980

Query: 212  ARHHAPSTIFLDEIDAIISQR 232
            A   +P+ IF+DE+D+++ QR
Sbjct: 1981 ASKVSPTIIFVDEVDSMLGQR 2043



 Score = 58.5 bits (140), Expect(2) = 3e-40
 Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
 Frame = +3

Query: 240  EASRRLKTELLIQMDGLT-RTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARV 298
            +A R++K E +   DGLT +  E + VLAATN P++LD A++RR E+RI+V LP  E R 
Sbjct: 2064 KAMRKIKNEFMSHWDGLTTKQGERILVLAATNKPFDLDEAIIRRFERRIMVGLPSVENRE 2243

Query: 299  AMFEELL 305
             +   LL
Sbjct: 2244 KILRTLL 2264


>TC86159 homologue to GP|21387177|gb|AAM47992.1 26S proteasome AAA-ATPase
           subunit RPT4a-like protein {Arabidopsis thaliana},
           complete
          Length = 1640

 Score =  155 bits (393), Expect = 2e-38
 Identities = 93/286 (32%), Positives = 161/286 (55%), Gaps = 4/286 (1%)
 Frame = +2

Query: 120 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 178
           ++ + ++ GL +  R L+E++ +P+  P+ F  + + P KG+LL+GPPGTGKT+LA+A+A
Sbjct: 473 NISYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 652

Query: 179 TECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQR-GEARS 237
           +     F  + +S+++ K+ G+S +L++ +F  AR H P  IF+DEIDAI  +R  E  S
Sbjct: 653 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 832

Query: 238 EHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPEPE 295
                +R   ELL Q+DG  +  ++  ++ ATN P  LD A+LR  RL+++I +PLP  +
Sbjct: 833 ADREIQRTLMELLNQLDGFDQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQ 1009

Query: 296 ARVAMFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLRRLMSQLEQRED 355
           +R+ + +           I Y+ +V   EG++G+D+R +C E  M  +R       +R+ 
Sbjct: 1010SRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR------AERDY 1171

Query: 356 LVPEEELPKVGPIRPEDIQAALKNTRPSAHLHAHKYDKFNADYGSQ 401
           ++ E+ +  V  +         K    SAH        +NAD+G +
Sbjct: 1172VIHEDFMKAVRKLN------EAKKLESSAH--------YNADFGKE 1267


>TC85936 homologue to GP|13537115|dbj|BAB40755. AtSUG1 {Arabidopsis
           thaliana}, partial (98%)
          Length = 1633

 Score =  146 bits (369), Expect = 1e-35
 Identities = 91/241 (37%), Positives = 141/241 (57%), Gaps = 5/241 (2%)
 Frame = +1

Query: 119 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 177
           PD  ++ I GL+   + +KE + +PIK+P+ F  L ++  KG+LL+GPPGTGKT+LA+AV
Sbjct: 607 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAV 786

Query: 178 ATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGEARS 237
           A     TF  +S S +V K+ G+  ++V+ LF +AR HAPS IF+DEID+I S R E+ S
Sbjct: 787 AHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 966

Query: 238 EHEAS--RRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPE 293
            +  S  +R   ELL Q+DG   +++ + VL ATN    LD A+LR  R++++I  P P 
Sbjct: 967 GNGDSEVQRTMLELLNQLDGFEASNK-IKVLMATNRIDILDQALLRPGRIDRKIEFPNPN 1143

Query: 294 PEARVAMFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLRRLMSQLEQR 353
            E+R  + +           I    +  +  G SG++++ +C E  M  LR     + Q 
Sbjct: 1144EESRRDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQE 1323

Query: 354 E 354
           +
Sbjct: 1324D 1326


>TC77261 homologue to GP|8777330|dbj|BAA96920.1 26S proteasome AAA-ATPase
           subunit RPT3 {Arabidopsis thaliana}, partial (94%)
          Length = 1575

 Score =  145 bits (366), Expect = 3e-35
 Identities = 87/256 (33%), Positives = 149/256 (57%), Gaps = 4/256 (1%)
 Frame = +2

Query: 94  LLPPFESAEMRTLAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 153
           +LPP   + +  L++S         PDV +  I G +  K+ ++EAV +P+ + + +  +
Sbjct: 506 VLPPEADSSISLLSQS-------EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQI 664

Query: 154 -LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLA 212
            + P +G+LL+GPPGTGKTMLAKAVA      F  +  S  V K+ G+  ++V+ +F+LA
Sbjct: 665 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA 844

Query: 213 RHHAPSTIFLDEIDAIISQRGEARSEHEAS-RRLKTELLIQMDGLTRTDELVFVLAATNL 271
           + +AP+ IF+DE+DAI + R +A++  +   +R+  ELL QMDG  +T   V V+ ATN 
Sbjct: 845 KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVN-VKVIMATNR 1021

Query: 272 PWELDAAMLR--RLEKRILVPLPEPEARVAMFEELLPPQPDEESIPYDLLVNQTEGYSGS 329
              LD A+LR  RL+++I  PLP+   +  +F+         + +  +  V++ +  S +
Sbjct: 1022ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAA 1201

Query: 330 DIRLLCKEVAMQPLRR 345
           +I  +C+E  M  +R+
Sbjct: 1202EISAICQEAGMHAVRK 1249


>TC77012 homologue to SP|P54776|PRSA_LYCES 26S protease regulatory subunit
           6A homolog (TAT-binding protein homolog 1) (TBP-1)
           (Mg(2+), complete
          Length = 1793

 Score =  142 bits (359), Expect = 2e-34
 Identities = 86/241 (35%), Positives = 139/241 (56%), Gaps = 5/241 (2%)
 Frame = +1

Query: 119 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 177
           P   +  I GLE   + L EA+V+P+ + + F  L + P KG+LL+GPPGTGKT++A+A 
Sbjct: 625 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGIRPPKGVLLYGPPGTGKTLMARAC 804

Query: 178 ATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQR--GEA 235
           A +   TF  ++   +V  + GD  KLV+  FQLA+  +P  IF+DEIDAI ++R   E 
Sbjct: 805 AAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV 984

Query: 236 RSEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPE 293
             + E  R +  ELL Q+DG + +D+ + V+AATN    LD A++R  RL+++I  P P 
Sbjct: 985 SGDREVQRTM-LELLNQLDGFS-SDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPT 1158

Query: 294 PEARVAMFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLRRLMSQLEQR 353
            EAR  + +           + ++ L   T+ ++G+ ++ +C E  M  LRR  +++   
Sbjct: 1159EEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 1338

Query: 354 E 354
           +
Sbjct: 1339D 1341


>AW774182 homologue to PIR|F84674|F84 probable AAA-type ATPase [imported] -
           Arabidopsis thaliana, partial (27%)
          Length = 487

 Score =  142 bits (357), Expect = 3e-34
 Identities = 64/115 (55%), Positives = 90/115 (77%)
 Frame = -1

Query: 120 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT 179
           +VKW  + GL++AK+ L+ AV++P+KY ++ TG   PW+  LL+GPPGTGK+ LAKAVAT
Sbjct: 364 NVKWNDVAGLKSAKQSLQ*AVILPVKYRQFLTGKRRPWRAFLLYGPPGTGKSYLAKAVAT 185

Query: 180 ECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGE 234
           +  +TFF++S+S +VSKW G+SEKLV  LF++AR  APS IF+DEID++   RGE
Sbjct: 184 KADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGTRGE 20


>BF647954 homologue to GP|11094192|db 26S proteasome regulatory particle
           triple-A ATPase subunit4 {Oryza sativa (japonica
           cultivar-group)}, partial (53%)
          Length = 649

 Score =  139 bits (351), Expect = 1e-33
 Identities = 75/194 (38%), Positives = 119/194 (60%), Gaps = 3/194 (1%)
 Frame = +2

Query: 154 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLAR 213
           + P KG+LL+GPPGTGKT+LA+A+A+     F  + +S+++ K+ G+S +L++ +F  AR
Sbjct: 32  IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESSRLIREMFGYAR 211

Query: 214 HHAPSTIFLDEIDAIISQR-GEARSEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLP 272
            H P  IF+DEIDAI  +R  E  S     +R   ELL Q+DG  +  + V ++ ATN P
Sbjct: 212 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGK-VKIIMATNRP 388

Query: 273 WELDAAMLR--RLEKRILVPLPEPEARVAMFEELLPPQPDEESIPYDLLVNQTEGYSGSD 330
             LD A+LR  RL+++I +PLP  ++R+ + +           I Y+ +V   EG++G+D
Sbjct: 389 DVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGAD 568

Query: 331 IRLLCKEVAMQPLR 344
           +R +C E  M  +R
Sbjct: 569 LRNICTEAGMSAIR 610


>TC85744 homologue to PIR|T08959|T08959 proteinase homolog F19B15.70 -
           Arabidopsis thaliana, complete
          Length = 1629

 Score =  139 bits (351), Expect = 1e-33
 Identities = 84/234 (35%), Positives = 136/234 (57%), Gaps = 4/234 (1%)
 Frame = +2

Query: 115 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTML 173
           +  +P   +  I GL+   + +KEAV +P+ +P+ +  + + P KG++L+G PGTGKT+L
Sbjct: 626 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLL 805

Query: 174 AKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRG 233
           AKAVA     TF  +  S ++ K+ GD  KLV+ LF++A   +PS +F+DEIDA+ ++R 
Sbjct: 806 AKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY 985

Query: 234 EARSEHEAS-RRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLR--RLEKRILVP 290
           +A S  E   +R   ELL Q+DG     + V V+ ATN    LD A+LR  R++++I  P
Sbjct: 986 DAHSGGEREIQRTMLELLNQLDGFDSRGD-VKVILATNRIESLDPALLRPGRIDRKIEFP 1162

Query: 291 LPEPEARVAMFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLR 344
           LP+ + R  +F          + +  +  V   + +SG+DI+ +C E  +  LR
Sbjct: 1163LPDIKTRRRIFTIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 1324


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.315    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,999,319
Number of Sequences: 36976
Number of extensions: 137411
Number of successful extensions: 821
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of query: 404
length of database: 9,014,727
effective HSP length: 98
effective length of query: 306
effective length of database: 5,391,079
effective search space: 1649670174
effective search space used: 1649670174
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)