TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0265.3
         (532 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG453710 weakly similar to GP|21537057|gb| unknown {Arabidopsis ...    31  1.0
TC79742 similar to GP|10177241|dbj|BAB10615. gb|AAC98455.1~gene_...    30  2.3
BQ151241 GP|19917424|gb conserved hypothetical protein {Methanos...    30  3.0
TC90481 weakly similar to PIR|F96526|F96526 hypothetical protein...    30  3.0
TC82544 weakly similar to GP|23559675|emb|CAD52956. unnamed prot...    29  5.1
TC84141 weakly similar to PIR|H96544|H96544 hypothetical protein...    28  8.8

>BG453710 weakly similar to GP|21537057|gb| unknown {Arabidopsis thaliana},
           partial (6%)
          Length = 651

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 156 NPAMLLSSLFFWERSTNSFHVPFGTLSPTLLDV 188
           +P+M+ +    W   T+SFH+P G ++ TL DV
Sbjct: 474 DPSMIRAMCERWHTETSSFHLPMGEMTITLDDV 376


>TC79742 similar to GP|10177241|dbj|BAB10615.
           gb|AAC98455.1~gene_id:MRN17.17~strong similarity to
           unknown protein {Arabidopsis thaliana}, partial (32%)
          Length = 1063

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 15/116 (12%)
 Frame = +2

Query: 94  PSYRFPFLKDPK---RTFRSAPPNPSAGEGAYLRWLDRVEASKFG-------HWKVTGIF 143
           P Y   +LK+P+     F S      A   + +R  D  EA  F        ++     F
Sbjct: 524 PKYNKNWLKNPRCKTHLFASEVAIHRALLTSDVRTFDPYEADFFFVPVYVSCNFSTVNGF 703

Query: 144 DLIQLSRSPITYNPAMLLSSLFFWERSTNSFHV-----PFGTLSPTLLDVAAITGL 194
             I  +RS I+    ++ +   FW RST S HV      FG+   TL DVA   G+
Sbjct: 704 PAIGHARSLISSAVKLISTEYPFWNRSTGSDHVFVASHDFGSCFHTLQDVAMKDGV 871


>BQ151241 GP|19917424|gb conserved hypothetical protein {Methanosarcina
           acetivorans str. C2A}, partial (3%)
          Length = 560

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 16/51 (31%), Positives = 25/51 (48%)
 Frame = +1

Query: 371 LKRFRSSFAPYHKPSYGPRWLRNSYPNLPGSENLSQHQVELWQTILSPRVL 421
           L  F SS +P+   SY P    + +   P    +S H   L+ ++ SPR+L
Sbjct: 208 LALFLSSMSPFIFSSYAPSPSSSGFSLFPSLSAISIHSPSLFTSLSSPRLL 360


>TC90481 weakly similar to PIR|F96526|F96526 hypothetical protein F27K7.9
           [imported] - Arabidopsis thaliana, partial (9%)
          Length = 669

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 21/74 (28%), Positives = 32/74 (42%)
 Frame = +3

Query: 159 MLLSSLFFWERSTNSFHVPFGTLSPTLLDVAAITGLWVVGDDYHSSAAPTNPIAIPTDNI 218
           + LS LF    S + +H PF  LSP+     +IT L+ +  +  S     N       N 
Sbjct: 192 LFLSLLFLNSSSFSEWHFPFANLSPS--SNVSITPLFTIHQEQLSKIPEVN-----VSNQ 350

Query: 219 AFSKFIKDHYVENG 232
            F   +  ++ ENG
Sbjct: 351 GFENTLLGNFSENG 392


>TC82544 weakly similar to GP|23559675|emb|CAD52956. unnamed protein product
           {Eucalyptus grandis}, partial (44%)
          Length = 739

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 12/28 (42%), Positives = 17/28 (59%)
 Frame = +2

Query: 324 PSLPAKNPPPTVSNTRIEAFRLEALTPP 351
           PS+P    PPT SN+ +    ++ LTPP
Sbjct: 218 PSIPIHASPPTFSNSSLLFMAVKPLTPP 301


>TC84141 weakly similar to PIR|H96544|H96544 hypothetical protein F8A12.4
           [imported] - Arabidopsis thaliana, partial (3%)
          Length = 720

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +3

Query: 250 YVFCTKSLRIPAKLLPLANLLHEGRIIAMARLVLGNLYQ---MINEAIADIR 298
           +VF  +   + + L P+A  L  G  IA+A  VL +LY+   +  + I D++
Sbjct: 18  FVFSHRYFIVKSSLFPIAIHLVRGNTIALAPTVLASLYKD*TLFKKQIVDLK 173


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.321    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,349,349
Number of Sequences: 36976
Number of extensions: 305850
Number of successful extensions: 1607
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1607
length of query: 532
length of database: 9,014,727
effective HSP length: 101
effective length of query: 431
effective length of database: 5,280,151
effective search space: 2275745081
effective search space used: 2275745081
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)