TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0262.4
         (180 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG647389                                                               55  6e-13
BE999414                                                               46  7e-06
BG644741                                                               32  0.14
BQ137174                                                               28  2.0
TC87974 homologue to PIR|S71750|S71750 import intermediate-assoc...    27  3.4
AW774198                                                               26  7.5
BG648465 similar to GP|9955545|emb| ankyrin-repeat containing pr...    26  7.5

>BG647389 
          Length = 718

 Score = 55.5 bits (132), Expect(2) = 6e-13
 Identities = 30/87 (34%), Positives = 52/87 (59%)
 Frame = +1

Query: 63  MFKGTAMAWFTTLPLGSIVKFRDFSSKFLIQFSASKIKQVTIDDLYNVRQLERETLKQYV 122
           + K     W+  LP  SI  +++ + K + QFSASK  +V+  +L+NVRQ   E+L +Y+
Sbjct: 445 ILKEATQQWYMNLPRFSITGYQNMTHKLVHQFSASKHCKVSTTNLFNVRQDPNESLPEYL 624

Query: 123 KRYSAASVKIEELEP*ACARAFKDGLL 149
             ++ A++K+   +    A AF++GLL
Sbjct: 625 V*FNNATIKVVNPKQELFAGAFQNGLL 705



 Score = 34.3 bits (77), Expect(2) = 6e-13
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +2

Query: 7   PFSAVVREVAIPDNMKSLALEAYSGGTDPKDHLLYFSMKMVISAASDAVKC 57
           P S  +    + +N+KSL+L ++   +DP +H   F+ +M +  A  +++C
Sbjct: 281 PLSMDIWNAPVLENLKSLSLLSFDDKSDPVEHATTFNTQMAVIGALKSLRC 433


>BE999414 
          Length = 613

 Score = 46.2 bits (108), Expect = 7e-06
 Identities = 21/73 (28%), Positives = 37/73 (49%)
 Frame = +3

Query: 26 LEAYSGGTDPKDHLLYFSMKMVISAASDAVKCRMFPSMFKGTAMAWFTTLPLGSIVKFRD 85
          +++Y G  DP +H+    + +   +   AVKC++F +  +  AM WF  L   SI  + D
Sbjct: 9  MDSYDGT*DPDEHMENIEVVLTYRSVRGAVKCKLFVTTLRRGAMTWFKNLRRNSIGSWGD 188

Query: 86 FSSKFLIQFSASK 98
             +F   F+ S+
Sbjct: 189LCHEFTTHFTVSR 227


>BG644741 
          Length = 735

 Score = 32.0 bits (71), Expect = 0.14
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = -2

Query: 58  RMFPSMFKGTAMAWFTTLPLGSIVKFRDFSSKFLIQFSASKIKQVTIDDLYNVRQLERET 117
           R+FP    G A  WFT LP  SI  +      FL ++     K    D + N   L  E+
Sbjct: 584 RVFPLSLMGEADIWFTELPYNSIFTWNQLRDVFLARYYPVSKKLNHNDRVNNFVALPGES 405

Query: 118 LKQYVKRYSA 127
           +     R+++
Sbjct: 404 VSSSWDRFTS 375


>BQ137174 
          Length = 977

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
 Frame = -3

Query: 64  FKGT----AMAWFTTLPLGSIVKFRDFSSKFLI 92
           +KGT    +++WF TL  G +V   D  +KFL+
Sbjct: 240 YKGTESIESLSWFKTLGEGVVVSIHDAQNKFLL 142


>TC87974 homologue to PIR|S71750|S71750 import intermediate-associated 100K
            protein precursor - garden pea, partial (68%)
          Length = 2331

 Score = 27.3 bits (59), Expect = 3.4
 Identities = 15/35 (42%), Positives = 19/35 (53%)
 Frame = +1

Query: 13   REVAIPDNMKSLALEAYSGGTDPKDHLLYFSMKMV 47
            REV I   MK LA+EAY  G  P + + + S   V
Sbjct: 2062 REVCILVIMKCLAVEAYWRGQSPHNSVFFVSFHFV 2166


>AW774198 
          Length = 554

 Score = 26.2 bits (56), Expect = 7.5
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 9   SAVVREVAIPDNMKSLALEAYSGGTDPKDHLLYFSMKMVISAASDAVKCRMFPSM 63
           SAV++ +    N+KSL ++ Y G + P          M+    S+ V C   PS+
Sbjct: 257 SAVLKHLQPSTNLKSLTIKGYGGTSFPNWLGDNVFGNMLYLRISNCVNCLWLPSL 421


>BG648465 similar to GP|9955545|emb| ankyrin-repeat containing protein
           {Arabidopsis thaliana}, partial (9%)
          Length = 787

 Score = 26.2 bits (56), Expect = 7.5
 Identities = 17/63 (26%), Positives = 28/63 (43%)
 Frame = +3

Query: 22  KSLALEAYSGGTDPKDHLLYFSMKMVISAASDAVKCRMFPSMFKGTAMAWFTTLPLGSIV 81
           KSL +     GT  K+  L+F   ++ SA S  ++C   P       +   T  P  S+ 
Sbjct: 264 KSLVVRCAKRGTTKKNEFLFFFNAVMASAKSVFLECSHLPPTLISHVLVAATCPP--SVT 437

Query: 82  KFR 84
           +F+
Sbjct: 438 QFK 446


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.323    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,979,966
Number of Sequences: 36976
Number of extensions: 40841
Number of successful extensions: 236
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of query: 180
length of database: 9,014,727
effective HSP length: 90
effective length of query: 90
effective length of database: 5,686,887
effective search space: 511819830
effective search space used: 511819830
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)