BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0262.11
(581 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG448304 42 7e-04
TC90113 similar to PIR|C86301|C86301 arginine/serine-rich protei... 41 0.001
TC83528 40 0.002
AW685995 similar to PIR|I51618|I516 nucleolar phosphoprotein - A... 39 0.004
TC81177 similar to GP|15293081|gb|AAK93651.1 unknown protein {Ar... 39 0.006
BQ141681 weakly similar to GP|15145793|gb| basic proline-rich pr... 35 0.061
BQ137814 weakly similar to PIR|G02127|G021 fus-like protein - hu... 35 0.080
BQ137259 homologue to GP|15387793|emb hypothetical predicted pro... 34 0.14
TC86553 similar to PIR|G85436|G85436 hypothetical protein AT4g36... 34 0.14
TC76402 weakly similar to GP|18086561|gb|AAL57705.1 At2g01100/F2... 34 0.14
TC79126 similar to PIR|H96703|H96703 probable RING zinc finger p... 34 0.18
TC89863 similar to PIR|T03986|T03986 transformer-SR ribonucleopr... 34 0.18
TC77695 similar to PIR|T09704|T09704 probable arginine/serine-ri... 34 0.18
TC77786 34 0.18
BQ137236 weakly similar to GP|19070096|emb UL49 tegument protein... 33 0.23
TC87334 similar to GP|15293081|gb|AAK93651.1 unknown protein {Ar... 33 0.30
BQ137255 homologue to PIR|B34768|B347 ORF5 protein - Orf virus (... 32 0.52
TC78771 similar to GP|16612268|gb|AAL27502.1 AT3g61860/F21F14_30... 32 0.52
TC79172 similar to GP|9502381|gb|AAF88088.1| T12C24.29 {Arabidop... 32 0.68
AL369112 weakly similar to GP|13540393|gb| histone H1 {Pisum sat... 32 0.68
>BG448304
Length = 637
Score = 42.0 bits (97), Expect = 7e-04
Identities = 20/53 (37%), Positives = 33/53 (61%), Gaps = 1/53 (1%)
Frame = +2
Query: 273 LRDRPPPMLTKGDK-LDSKRFCEFHDSPDNNTDECLNLKDKVK*LIRAGRLSK 324
L PP T+ +K D ++C FH + TD+C++LKD ++ LI+ GRL++
Sbjct: 50 LGSNPPKTPTQENKGTDKTKYCRFHKCHRHLTDDCIHLKDTIEILIQRGRLNQ 208
>TC90113 similar to PIR|C86301|C86301 arginine/serine-rich protein
[imported] - Arabidopsis thaliana, partial (70%)
Length = 1259
Score = 40.8 bits (94), Expect = 0.001
Identities = 23/51 (45%), Positives = 27/51 (52%)
Frame = +1
Query: 334 PLPRSPTSRRSPTPPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGR 384
P+PR S R P PR+RA +P R R D Y R G +P RRR GR
Sbjct: 658 PVPRRAGSPRRPESPRRRADSPVRRRLDSPYRRGA--GDTPPRRRPVSPGR 804
Score = 35.4 bits (80), Expect = 0.061
Identities = 35/103 (33%), Positives = 41/103 (38%), Gaps = 42/103 (40%)
Frame = +1
Query: 331 GDLPLPRSPTSR---RSPTPPRQRART-----------------------PPRHRTDDRY 364
GD P R P S RSP+PP +R R+ PPR R+ R
Sbjct: 763 GDTPPRRRPVSPGRGRSPSPPPRRLRSPARVSPRRMRGSPGPGRRRSPPPPPRRRSPPRR 942
Query: 365 CRAP--------QNGRSPDRR------RSFD--RGRIPDRHGR 391
R+P + RSP RR RSF RGR P R GR
Sbjct: 943 ARSPPRRSPVGRRRSRSPIRRSARSRSRSFSPRRGRPPMRRGR 1071
>TC83528
Length = 555
Score = 40.0 bits (92), Expect = 0.002
Identities = 36/130 (27%), Positives = 56/130 (42%), Gaps = 17/130 (13%)
Frame = +3
Query: 459 TYTGKEDD-PIVIEALIGNG-----------SSADVMFYDAYKKLHLSVKDLLLYDHDLV 506
T+TG + P+VI+ I N S D++++ A+ K+ L L L
Sbjct: 153 TFTGPDVALPMVIKLQINNNFSVLRVFVNPMSKVDILYWSAFLKMKLQESMLKPCQGFLK 332
Query: 507 GFTGDRVLPLG*FDTCLSLEDPNICRTVKL--IVVECQTK---YNAILGRPSLNSYRAII 561
G G + G D + +T+K+ VVE YN +LG PSL +A++
Sbjct: 333 GTFGKGLPVKGYIDLDTTFGKGENTKTIKVRYFVVESPPSVSIYNVVLGWPSLKDLKAVL 512
Query: 562 STHHLMLKYP 571
S +KYP
Sbjct: 513 SVAEFTIKYP 542
>AW685995 similar to PIR|I51618|I516 nucleolar phosphoprotein - African
clawed frog, partial (5%)
Length = 516
Score = 39.3 bits (90), Expect = 0.004
Identities = 25/52 (48%), Positives = 25/52 (48%)
Frame = +1
Query: 333 LPLPRSPTSRRSPTPPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGR 384
LP PR P RRSP P R RAR P R R P RS RRS R R
Sbjct: 241 LPPPRRPLPRRSPAPRRSRARLSPSPRRRRSPPRRPPPRRSRALRRSRARPR 396
>TC81177 similar to GP|15293081|gb|AAK93651.1 unknown protein {Arabidopsis
thaliana}, partial (28%)
Length = 632
Score = 38.9 bits (89), Expect = 0.006
Identities = 21/47 (44%), Positives = 27/47 (56%), Gaps = 4/47 (8%)
Frame = +1
Query: 341 SRRSPTPPRQRARTPPRH----RTDDRYCRAPQNGRSPDRRRSFDRG 383
+R+ PT R R R+ RH R+ RY R+P+ RSP R RS RG
Sbjct: 223 NRKKPTEMRVRERSSGRHSDRRRSPPRYSRSPRYSRSPPRHRSRSRG 363
>BQ141681 weakly similar to GP|15145793|gb| basic proline-rich protein {Sus
scrofa}, partial (9%)
Length = 516
Score = 35.4 bits (80), Expect = 0.061
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +2
Query: 336 PRSPTSRRSPTPPRQRARTPPRHR 359
P P +RR P PPR RARTPP R
Sbjct: 407 PAPPRTRRGPPPPRARARTPPGAR 478
>BQ137814 weakly similar to PIR|G02127|G021 fus-like protein - human
(fragment), partial (8%)
Length = 1050
Score = 35.0 bits (79), Expect = 0.080
Identities = 26/92 (28%), Positives = 37/92 (39%)
Frame = +2
Query: 331 GDLPLPRSPTSRRSPTPPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHG 390
GDL R+ R P PP +R PP T + + R +RR D + DR
Sbjct: 227 GDLEGRRASPHRAQPWPPATPSRAPPHFHTPQHNIPSESSARRKNRRSVRDIEQQSDR-- 400
Query: 391 RDEVIRHHRMNQISVGSIAGGFAAGGHTSNSR 422
+R H G ++GG + G +SR
Sbjct: 401 ----VRGHARR---AGGVSGGDGSRGADDDSR 475
>BQ137259 homologue to GP|15387793|emb hypothetical predicted protein
LM15-1.83 unknown function {Leishmania major}, partial
(3%)
Length = 1050
Score = 34.3 bits (77), Expect = 0.14
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Frame = +1
Query: 345 PTPPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHGRDEVIRHHRMNQIS 404
P PP +RA PPR R G++P R +G+ +R R + R +Q +
Sbjct: 37 PPPPPERAGGPPR--------RGGWEGQAPPGLR*IRKGKGAERSKRGKKPNQSRHDQTT 192
Query: 405 -----VGSIAGGFAAGGHTSNSRKSSI*VIMSAMGRPRPRHSEPSRQ 446
GG A G T+ +R + PR +H +P+RQ
Sbjct: 193 NQIQPTKKKRGGKEAAGETNTAR--------APPSPPRTKHQKPTRQ 309
>TC86553 similar to PIR|G85436|G85436 hypothetical protein AT4g36980
[imported] - Arabidopsis thaliana, partial (41%)
Length = 1891
Score = 34.3 bits (77), Expect = 0.14
Identities = 29/80 (36%), Positives = 36/80 (44%), Gaps = 9/80 (11%)
Frame = +1
Query: 316 LIRAGRLSKYVALSYGDLPLPRSPTSRRSPTPPRQRARTPPRHRTDDRY-------CRAP 368
L RLS+Y S RS + RSP +R+R+P R R RY R+P
Sbjct: 1255 LAETSRLSRYRRRS-------RSRSYSRSPPRRYRRSRSPSRSRGSRRYHSSSRSRSRSP 1413
Query: 369 QN--GRSPDRRRSFDRGRIP 386
+ RSP R RS R R P
Sbjct: 1414 SHTRSRSPSRNRSPPRSRSP 1473
>TC76402 weakly similar to GP|18086561|gb|AAL57705.1 At2g01100/F23H14.7
{Arabidopsis thaliana}, partial (43%)
Length = 1449
Score = 34.3 bits (77), Expect = 0.14
Identities = 59/267 (22%), Positives = 102/267 (38%), Gaps = 19/267 (7%)
Frame = +3
Query: 179 FLTSLDGKKAKTVEEFQARSEKYINMEDAAALRASNQADQQKAPEWAKDPGDTTRIRESR 238
F+ ++ KK K +E +A + +E AA +A +A ++K + AK + +S
Sbjct: 678 FMQLVEEKKKKIMERKEAPLKWEQKLEAAAKAKADAEAKEKKL-KTAKHKKRSGSDTDSD 854
Query: 239 RKNQDEKKPKRKR----YENYAPLNSLSQILRERASTDLRDRPPPMLTKGDKLDSKRFCE 294
R + DE+K KR + ++ ++S R+ S+ + TK +S F
Sbjct: 855 RDSDDERKRASKRSHRKHRKHSHIDSGDHEKRKEKSSKWK-------TKKRSSESSDFSS 1013
Query: 295 FHDSPDNNTDECLNLKDKVK*LIR--AGRLSKYVALSYGDLPLPRSPTSRRSPTPP---- 348
D +++++E K K + IR R + + SY D R RR
Sbjct: 1014--DESESSSEEEKRRKKKQRKKIRDQDSRSNSSGSDSYADEVNKRKRRHRRRRPSKFSDS 1187
Query: 349 ---------RQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHGRDEVIRHHR 399
R R +H R+ + ++ S D R R RH + H R
Sbjct: 1188DFYSDEGECSDRKRGHGKHHKRHRHSESSESDLSSDESDDIHRKRSHRRHHK----HHRR 1355
Query: 400 MNQISVGSIAGGFAAGGHTSNSRKSSI 426
+ V S + G S S + S+
Sbjct: 1356SHNTEVRSSDSDYHGHGGRSRSSEKSL 1436
>TC79126 similar to PIR|H96703|H96703 probable RING zinc finger protein
T23K23.8 [imported] - Arabidopsis thaliana, partial
(81%)
Length = 1397
Score = 33.9 bits (76), Expect = 0.18
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Frame = +2
Query: 337 RSPTSRRSP-TPPRQRARTP--------PRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPD 387
RS T+ SP TP RQR R+P RHRT+ C +NG + RR S G +
Sbjct: 230 RSTTNTASPLTP*RQRRRSPYFPRSATRTRHRTERTICPGTRNGGA*TRRASCRLGILEA 409
Query: 388 RHGRDEVIRH 397
V+ H
Sbjct: 410 SGSA*HVVEH 439
>TC89863 similar to PIR|T03986|T03986 transformer-SR ribonucleoprotein -
common tobacco (fragment), partial (68%)
Length = 1157
Score = 33.9 bits (76), Expect = 0.18
Identities = 21/56 (37%), Positives = 26/56 (45%)
Frame = +1
Query: 337 RSPTSRRSPTPPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHGRD 392
RS +R P+ R PR R+ + P RSP R R R R PDR+G D
Sbjct: 310 RSLEKQRPPSQSMSREMQRPRSRSRSLERQRP---RSPSRNRGRSRSRSPDRNGGD 468
>TC77695 similar to PIR|T09704|T09704 probable arginine/serine-rich splicing
factor - alfalfa, partial (83%)
Length = 1657
Score = 33.9 bits (76), Expect = 0.18
Identities = 21/56 (37%), Positives = 28/56 (49%), Gaps = 5/56 (8%)
Frame = +1
Query: 334 PLPRSPTSRRSPTP-----PRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGR 384
P RSP+ +RSP+P P++ PR + D R +GRSP R RGR
Sbjct: 661 PARRSPSPKRSPSPKKSISPKKSPSPSPRRESPDTRSR---DGRSPTSRSVSPRGR 819
>TC77786
Length = 1094
Score = 33.9 bits (76), Expect = 0.18
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +3
Query: 278 PPMLTKGDKLDSKRFCEFHDSPDNNTDECLNLKDKVK*LIRAGRLSKYVALSYGDLPLPR 337
P +L + D + C +H S ++T+EC L++ ++ LI+ +L +++ + R
Sbjct: 780 PQLLK*SARTDKAK*CCYHRSRGHDTEECFQLREAIEDLIKKVKLGRFIDKGH------R 941
Query: 338 SPTSRRSP 345
+ R+SP
Sbjct: 942 KNSPRKSP 965
>BQ137236 weakly similar to GP|19070096|emb UL49 tegument protein
{Pseudorabies virus}, partial (10%)
Length = 1224
Score = 33.5 bits (75), Expect = 0.23
Identities = 31/124 (25%), Positives = 47/124 (37%)
Frame = +2
Query: 343 RSPTPPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHGRDEVIRHHRMNQ 402
R+P ++ R PP R D + RA +NG R+R RGR + + D+ +R +
Sbjct: 239 RTPPGDPKKTRPPPHTRKDTKKKRARENG----RKRRPRRGRKDENNTTDQGAGGNRDPE 406
Query: 403 ISVGSIAGGFAAGGHTSNSRKSSI*VIMSAMGRPRPRHSEPSRQKVTIWFSDDDYDTYTG 462
A K + G PRP + + + D DT TG
Sbjct: 407 PKAKGRENAKRARRRRKERGKRTRKGARRRGGNPRPTRTPTTHNTPRRPSAAQDPDTRTG 586
Query: 463 KEDD 466
+E D
Sbjct: 587 RESD 598
>TC87334 similar to GP|15293081|gb|AAK93651.1 unknown protein {Arabidopsis
thaliana}, partial (54%)
Length = 977
Score = 33.1 bits (74), Expect = 0.30
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Frame = +2
Query: 337 RSPTSRRSPTPPRQRARTPPRHRTDDRY---------CRAPQNGRSPDRRRSFDR 382
RSP SP P R PR D+RY R+P RSPDR RS+ R
Sbjct: 596 RSPDYTPSPRPRRYSRSISPR---DERYRRRSYSRSPYRSPYGSRSPDRGRSYSR 751
>BQ137255 homologue to PIR|B34768|B347 ORF5 protein - Orf virus (strain NZ2),
partial (10%)
Length = 1161
Score = 32.3 bits (72), Expect = 0.52
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Frame = +1
Query: 336 PRSPTSRRSPTPPRQRA---RTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHG 390
P PTS+ P PP A TPP R R P G RR + +R RHG
Sbjct: 214 PSQPTSQAPPAPPHPAASQPTTPPSARPAPAPARRPDGGGGA-RRPAIERAARRTRHG 384
>TC78771 similar to GP|16612268|gb|AAL27502.1 AT3g61860/F21F14_30
{Arabidopsis thaliana}, partial (87%)
Length = 1254
Score = 32.3 bits (72), Expect = 0.52
Identities = 25/56 (44%), Positives = 27/56 (47%), Gaps = 2/56 (3%)
Frame = +1
Query: 331 GDLPLPRSPTSRRSPTPPRQRARTPPRHRTDDRYCRAPQNGRSPD--RRRSFDRGR 384
G L SP RR P+P R R+P DRY P RSPD R RS D GR
Sbjct: 622 GGLARSPSPGYRRRPSPDYGRPRSP----VYDRY-TGPDRRRSPDYGRNRSPDYGR 774
>TC79172 similar to GP|9502381|gb|AAF88088.1| T12C24.29 {Arabidopsis
thaliana}, partial (71%)
Length = 1589
Score = 32.0 bits (71), Expect = 0.68
Identities = 20/47 (42%), Positives = 22/47 (46%)
Frame = +3
Query: 337 RSPTSRRSPTPPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRG 383
R P RSP+PP TPP RT + P N RRRS RG
Sbjct: 273 R*PQQLRSPSPP-----TPPPSRTLPSSSKRPSNDAGTLRRRSRSRG 398
>AL369112 weakly similar to GP|13540393|gb| histone H1 {Pisum sativum},
partial (20%)
Length = 371
Score = 32.0 bits (71), Expect = 0.68
Identities = 21/54 (38%), Positives = 26/54 (47%)
Frame = +3
Query: 335 LPRSPTSRRSPTPPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDR 388
+P T R +P PPR R R PPR P+ R P RRR+ R P+R
Sbjct: 129 MPARRTRRPTPKPPRSRLRRPPRSLPRRPLRSRPR--RPPPRRRT---RRTPNR 275
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.325 0.142 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,302,331
Number of Sequences: 36976
Number of extensions: 263880
Number of successful extensions: 2412
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 2110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2379
length of query: 581
length of database: 9,014,727
effective HSP length: 101
effective length of query: 480
effective length of database: 5,280,151
effective search space: 2534472480
effective search space used: 2534472480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0262.11