BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0262.10
(145 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC84172 similar to GP|9294147|dbj|BAB02049.1 SNF5 transcription... 264 1e-71
TC88214 similar to GP|4325339|gb|AAD17339.1| F15P23.1 gene produ... 28 1.3
TC81403 similar to PIR|T06752|T06752 carboxy-terminal proteinase... 27 3.8
TC79304 similar to GP|9759186|dbj|BAB09801.1 emb|CAB66399.1~gene... 26 4.9
TC88830 homologue to GP|13878027|gb|AAK44091.1 unknown protein {... 26 6.4
TC81437 similar to GP|10177523|dbj|BAB10918. gene_id:K1F13.7~sim... 26 6.4
TC87577 weakly similar to PIR|H96604|H96604 probable 3'-5' exonu... 26 6.4
TC85834 similar to GP|16974583|gb|AAL31187.1 AT4g39080/F19H22_18... 25 8.4
TC88525 pyrroline-5-carboxylate synthetase 1 [Medicago truncatula] 25 8.4
>TC84172 similar to GP|9294147|dbj|BAB02049.1 SNF5 transcription regulatory
protein homolog BSH {Arabidopsis thaliana}, partial
(75%)
Length = 589
Score = 264 bits (674), Expect = 1e-71
Identities = 126/145 (86%), Positives = 134/145 (91%)
Frame = +3
Query: 1 MKTPASVFYRNPVKFRMPTAENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTV 60
MKTP S FYRNPVKFRMPT+ENLVPIRLDIEID RYKDAFTWNPSDPD EV VFA+RTV
Sbjct: 27 MKTPVSAFYRNPVKFRMPTSENLVPIRLDIEIDGHRYKDAFTWNPSDPDSEVVVFAKRTV 206
Query: 61 KDLKLPPPFVTQIAQSIESQLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDL 120
+DLKLPPPFVTQIAQSI+SQLAEFRSY+GQDMYAGEKI+PIKLDL VNH LVKDQFLWDL
Sbjct: 207 RDLKLPPPFVTQIAQSIQSQLAEFRSYDGQDMYAGEKIVPIKLDLRVNHTLVKDQFLWDL 386
Query: 121 NNFESDLEELARIFCKDMGIEDPEV 145
NNF+SD EE AR FC+DMGIEDPEV
Sbjct: 387 NNFDSDPEEFARTFCRDMGIEDPEV 461
>TC88214 similar to GP|4325339|gb|AAD17339.1| F15P23.1 gene product
{Arabidopsis thaliana}, partial (83%)
Length = 1866
Score = 28.1 bits (61), Expect = 1.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 28 LDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTV 60
+D+ + KR+ DA W+ DHE G R +
Sbjct: 1477 VDVLLKVKRFADAMQWDARIADHEKGPHQREKI 1575
>TC81403 similar to PIR|T06752|T06752 carboxy-terminal proteinase homolog
F15B8.130 - Arabidopsis thaliana, partial (28%)
Length = 674
Score = 26.6 bits (57), Expect = 3.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 33 DAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPP 67
D+ +K F WNPS P H + + +++L P
Sbjct: 513 DSTMFKKQFLWNPSYPTHVLLP*CMNLLPEMRLRP 409
>TC79304 similar to GP|9759186|dbj|BAB09801.1
emb|CAB66399.1~gene_id:K19E1.19~strong similarity to
unknown protein {Arabidopsis thaliana}, partial (8%)
Length = 790
Score = 26.2 bits (56), Expect = 4.9
Identities = 18/67 (26%), Positives = 31/67 (45%)
Frame = +2
Query: 71 TQIAQSIESQLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEEL 130
TQI S+ Q F S +D E PIK+DL + ++ ++ + + + ES + E
Sbjct: 143 TQIQNSVMLQHPRFTSLMVRDHRGVEHWRPIKIDLDRHIFIINNESVSEDKDDESAISEY 322
Query: 131 ARIFCKD 137
C +
Sbjct: 323 MSDLCTE 343
>TC88830 homologue to GP|13878027|gb|AAK44091.1 unknown protein {Arabidopsis
thaliana}, partial (36%)
Length = 721
Score = 25.8 bits (55), Expect = 6.4
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +2
Query: 12 PVKFRMPTAENLVPIRLDIEIDAKRYKDA---FTWNPSDPDHEVGVFARRTVKDLKLPPP 68
P FR+ A+N + +R R A ++W + P G+F +T+KD L P
Sbjct: 497 PPYFRL-RAQNNLSVRFQENFRVLRVWVAPRQWSWPLNLPLEFFGIFRAKTLKDEDLSTP 673
Query: 69 FVTQIAQSIES 79
+ +I Q + S
Sbjct: 674 WAGEIEQKVLS 706
>TC81437 similar to GP|10177523|dbj|BAB10918. gene_id:K1F13.7~similar to
unknown protein~sp|P55606 {Arabidopsis thaliana},
partial (47%)
Length = 1426
Score = 25.8 bits (55), Expect = 6.4
Identities = 15/59 (25%), Positives = 25/59 (41%)
Frame = +3
Query: 58 RTVKDLKLPPPFVTQIAQSIESQLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQF 116
+TVKD PP + + Q++ +S G +YA + K + L+ QF
Sbjct: 255 KTVKDSTHPPAAIPETVQNVHEGSVSEKSSFGTIVYAPSEFPDAKPETLEKTQLILQQF 431
>TC87577 weakly similar to PIR|H96604|H96604 probable 3'-5' exonuclease
[imported] - Arabidopsis thaliana, partial (54%)
Length = 1980
Score = 25.8 bits (55), Expect = 6.4
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 91 DMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIF 134
D+ + +P +LD C+ +L+ L NF+ D+++LA +
Sbjct: 1327 DLIKLHREVPERLDSCLTRILLSPGILKLGYNFQCDIKQLAHSY 1458
>TC85834 similar to GP|16974583|gb|AAL31187.1 AT4g39080/F19H22_180
{Arabidopsis thaliana}, partial (97%)
Length = 2959
Score = 25.4 bits (54), Expect = 8.4
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +2
Query: 43 WNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQSIESQLAEFRSYEGQDMYAG 95
W+P H+V +R KD + Q+ + ES FR+ + Y G
Sbjct: 1190 WSPVFATHQVQDALKRAAKDSNSQVSAILQVLHTRESPPTYFRTNKFTSSYQG 1348
>TC88525 pyrroline-5-carboxylate synthetase 1 [Medicago truncatula]
Length = 2520
Score = 25.4 bits (54), Expect = 8.4
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Frame = +2
Query: 20 AENLVPIRLDIEIDAKRYKDAFTWNPSD--PDHEVGVFARRTVKDLKL-----PPPFVTQ 72
AENL I I +KDA W PS E+ V AR + L+ +
Sbjct: 860 AENLTKILQGQRIGTLFHKDAHKWVPSKEVDVREMAVAARDCSRRLQAVSSEERKQILLN 1039
Query: 73 IAQSIESQLAEFRSYEGQDMYAGEK 97
IA +++S+ E R D+ A ++
Sbjct: 1040IADALQSREKEIRIENEADVVAAQE 1114
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.139 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,243,382
Number of Sequences: 36976
Number of extensions: 49882
Number of successful extensions: 207
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of query: 145
length of database: 9,014,727
effective HSP length: 87
effective length of query: 58
effective length of database: 5,797,815
effective search space: 336273270
effective search space used: 336273270
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0262.10