BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0260.13
(1003 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC82786 similar to GP|20160807|dbj|BAB89747. contains ESTs D2212... 296 e-104
TC89965 similar to GP|3402673|gb|AAC28976.1| unknown protein {Ar... 289 3e-78
TC79171 similar to GP|19310435|gb|AAL84954.1 F17H15.1/F17H15.1 {... 73 6e-13
TC88879 weakly similar to PIR|T04011|T04011 hypothetical protein... 55 1e-07
TC80054 SP|Q28009|FUS_BOVIN RNA-binding protein FUS (Pigpen prot... 54 3e-07
TC78741 weakly similar to GP|21593418|gb|AAM65385.1 unknown {Ara... 51 2e-06
TC86392 weakly similar to GP|8778551|gb|AAF79559.1| F22G5.35 {Ar... 41 0.002
TC77708 weakly similar to GP|18266654|gb|AAL67600.1 unknown prot... 39 0.008
TC89571 similar to GP|18087662|gb|AAL58954.1 putative RNA-bindin... 38 0.017
TC80881 similar to PIR|T11622|T11622 extensin class 1 precursor ... 38 0.017
TC92553 similar to PIR|T39903|T39903 serine-rich protein - fissi... 38 0.022
TC89554 similar to GP|13605675|gb|AAK32831.1 AT5g62640/MRG21_6 {... 38 0.022
BG581317 homologue to OMNI|NTL01EC003 IS2 hypothetical protein {... 37 0.029
TC90952 similar to GP|15724316|gb|AAL06551.1 AT4g34150/F28A23_90... 37 0.038
BG646467 similar to SP|O64668|PSNH Presenilin homolog. [Mouse-ea... 37 0.038
TC83143 37 0.038
TC86542 weakly similar to GP|19698991|gb|AAL91231.1 EF-hand calc... 37 0.049
TC85621 similar to PIR|C96597|C96597 Rubisco subunit binding-pro... 36 0.065
BQ144314 weakly similar to GP|21322711|em pherophorin-dz1 protei... 36 0.065
BI264438 similar to GP|21427467|gb actin-related protein 6 {Arab... 36 0.084
>TC82786 similar to GP|20160807|dbj|BAB89747. contains ESTs D22123(C10376)
AU092065(C10376)~similar to Arabidopsis thaliana
chromosome 2, partial (10%)
Length = 823
Score = 296 bits (757), Expect(2) = e-104
Identities = 154/210 (73%), Positives = 164/210 (77%), Gaps = 29/210 (13%)
Frame = +2
Query: 475 DKQMKACQAVMKEMITKATADGTLCTRNWDMEPLFPMPDSDVVNKDSVLSSTH------- 527
DKQM ACQAVMKEMITKATAD TLCTRNWDMEPLFPMP++D NKD+ LSSTH
Sbjct: 2 DKQMAACQAVMKEMITKATADCTLCTRNWDMEPLFPMPEADAENKDNSLSSTHDSLLPKS 181
Query: 528 KRSPRRSKSRWEPLPEEKPVDN----------------------PVSISNDTVKYSAWVP 565
++SPRRSKSRWEPLPEEK VD+ PVS SNDTVKYS+WVP
Sbjct: 182 RKSPRRSKSRWEPLPEEKLVDHHPVSTSSDTVKYSSWVPPVNHHPVSTSNDTVKYSSWVP 361
Query: 566 NVKDRKVVMENKESKEDDLRNTKFSPFIQRTSSKAPQRPFKKQRLTDASIAHENGDASSG 625
N KDRKVV+ENKESKED RNTKFSP QR SSKAPQRPFKKQRL D S AHENGDASS
Sbjct: 362 NEKDRKVVVENKESKEDSWRNTKFSPLFQRISSKAPQRPFKKQRLADVSTAHENGDASSD 541
Query: 626 SDKEQSLTAYYSAAMAFSDTPEEKKRRENR 655
SDKEQSLTAYYSAAMAF+DTPEEKKRRE+R
Sbjct: 542 SDKEQSLTAYYSAAMAFNDTPEEKKRRESR 631
Score = 101 bits (251), Expect(2) = e-104
Identities = 54/72 (75%), Positives = 59/72 (81%), Gaps = 4/72 (5%)
Frame = +1
Query: 651 RRENRSKRF--DL--GQGHRTENNHFRRKNAGAGNLYSRRASALVLSKSFEDGVSKAVED 706
R+E K F DL GQ RTENNH R+KNA AGNLY+RRASALVLSKSF++GVSKAVED
Sbjct: 607 RKEKT*KSFLSDLI*GQAQRTENNHSRKKNARAGNLYNRRASALVLSKSFDNGVSKAVED 786
Query: 707 IDWDALTVKGAC 718
IDWDALTVKG C
Sbjct: 787 IDWDALTVKGTC 822
>TC89965 similar to GP|3402673|gb|AAC28976.1| unknown protein {Arabidopsis
thaliana}, partial (15%)
Length = 782
Score = 289 bits (740), Expect = 3e-78
Identities = 142/168 (84%), Positives = 153/168 (90%)
Frame = +3
Query: 836 NNNRDLLSSMTRLSDEAKKDEAVKHALAVRAAVTSGNYVAFFRLYKEAPNLNTCLMDLYV 895
N R+LLSSM R+SDEAKKDEAVKHALAVRAAVTSGNYVAFFRLYK APNLNTCLMDLYV
Sbjct: 3 NTYRELLSSMARISDEAKKDEAVKHALAVRAAVTSGNYVAFFRLYKAAPNLNTCLMDLYV 182
Query: 896 EKMRYKAVSCMCRSYRPTVPVSYISHVLGFSTSAVANGGSDEKDTEAFEECLEWLKAHGA 955
EKMRYKAV+CMCRSYRPTVPVSY+S VLGFS+ V N +DEK+ A EECLEWLKAHGA
Sbjct: 183 EKMRYKAVTCMCRSYRPTVPVSYVSQVLGFSSVVVTNEANDEKEAAALEECLEWLKAHGA 362
Query: 956 SIMTDNNKDILVDTKVSSSSLFMPEPEDAVAHGDANLAVNDFLAKAPL 1003
SI+ DNN D++VDTKVSSSSLF+PEPEDAVAHGDANLAVNDFLAKAPL
Sbjct: 363 SIIADNNGDMMVDTKVSSSSLFVPEPEDAVAHGDANLAVNDFLAKAPL 506
>TC79171 similar to GP|19310435|gb|AAL84954.1 F17H15.1/F17H15.1 {Arabidopsis
thaliana}, partial (27%)
Length = 1421
Score = 72.8 bits (177), Expect = 6e-13
Identities = 93/350 (26%), Positives = 127/350 (35%), Gaps = 14/350 (4%)
Frame = +2
Query: 28 QNQPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQDGQNVSSVAGN 87
Q++PPS P + V A G YS P+ QY+ PQPP G G
Sbjct: 242 QSRPPS--SWAPPAAPVQQAGYGYGQPGSYSGPSPQYNT-PQPP----YTGYPPQQPGGY 400
Query: 88 SSNLGTANVPQD--------YNAYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPV 139
S+N + P Y+ Y P G S G +Y Q P+ YSQP
Sbjct: 401 SANWDQSTAPSHQQSTHASGYDYYNQQPQQQQNPGGPSQPADGSAYSYSQPPSSGYSQPG 580
Query: 140 GAYQNTGAPYQPISSFQNTGSYAGSANYSSTYYNPAPADYQTTGVYQNSTGYANQAPPWN 199
Y ++ G+Y +A S Y P D Q Y ++ Y + + P
Sbjct: 581 QGYGQ-----------ESYGAY--NAQQQSGYGQPQTYDQQQG--YGSAPSYGSGSNPTQ 715
Query: 200 NGSYSSYASHPHTNYTPDSNS---SGAATTSVQYQQQQQNPWADYYNQTEVSCAPGTENL 256
G S+Y S T+ T + G AT QQ P Y + AP
Sbjct: 716 EGHTSNYGSQADTSQTSQPTTVAQQGYATN------QQGTPQPGY------AVAP----- 844
Query: 257 SVTSSSTFGG-PIPAATSGYATPNSQPQQSYPPYWRQDSSASAVPSFQPAAINSGD--HD 313
TS +T+G P +GY P SQ + PP + Q S S + +A S
Sbjct: 845 --TSQATYGSQPQSGYGTGYGAPPSQKPSANPPVYGQSQSPSTAAGYGQSAYPSSQAPPS 1018
Query: 314 GYWNHGAQTSQIHQTNPIQPNYQSPLDLKSSYDNFQDQQKTVSSQGTNLY 363
GY AQ Q P+QP Y P + +T +S G + Y
Sbjct: 1019GY----AQPELGTQRAPVQPGY-GPQSYGAPQGGQPSYGQTPASYGNSSY 1153
>TC88879 weakly similar to PIR|T04011|T04011 hypothetical protein T5L19.200
- Arabidopsis thaliana, partial (6%)
Length = 1573
Score = 55.5 bits (132), Expect = 1e-07
Identities = 66/218 (30%), Positives = 89/218 (40%), Gaps = 8/218 (3%)
Frame = +3
Query: 66 QHPQPPG--RSIQDGQNVSSVAGNSSNLGTANVPQDYNAYTSYPSSSNPYGYGSAGYTGY 123
QHPQ G R+ Q G+ + + GT P Y + S PS + YGSA
Sbjct: 795 QHPQSYGHPRATQPGEIPYQGPTPAQSYGTVQQPYPYAS--SGPSQAAYPTYGSAPAADG 968
Query: 124 YNNYQQQPNQTYSQPVG--AYQNTGAPYQPISSFQNTG--SYAGSANYSSTY-YNPAPAD 178
Y++ Q P Q Y+QP G +Y GA Q ++S+ G Y + TY PAP
Sbjct: 969 YSHPQSAPGQVYAQPGGQPSYGQPGA--QAVASYAQVGPTGYGSYPSSQQTYPEQPAP-- 1136
Query: 179 YQTTGVYQNSTGYANQAPPWNNGSYSSYASHPHTNYTPDSNSSGAATTSVQYQQQQQNPW 238
NS GY QAP + +YSS A+ + + P T Q Q NP
Sbjct: 1137--------NSAGYGYQAP--QDPAYSSGAAQTY-SAAPTVQPGYVQPTPTQTGYDQSNPQ 1283
Query: 239 -ADYYNQTEVSCAPGTENLSVTSSSTFGGPIPAATSGY 275
A Y + AP +V+ P PAA + Y
Sbjct: 1284PAGYAAVPPAAGAPAAYGKTVS-------PQPAAYAQY 1376
Score = 39.3 bits (90), Expect = 0.008
Identities = 49/155 (31%), Positives = 60/155 (38%), Gaps = 5/155 (3%)
Frame = +3
Query: 30 QPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQDGQNVSSVAGNSS 89
QP YA + P SQA S+ A GYS+P Q PG GQ + + +
Sbjct: 891 QPYPYASSGP-SQAAYPTYGSAPAADGYSHPQSAPGQVYAQPGGQPSYGQPGAQAVASYA 1067
Query: 90 NLGTANVPQDYNAYTSYPSSSNPY----GYGSAGYTGYYNNYQQQPNQTYSQPVGAYQN- 144
+G Y SYPSS Y SAGY YQ + YS GA Q
Sbjct: 1068 QVGP-------TGYGSYPSSQQTYPEQPAPNSAGY-----GYQAPQDPAYSS--GAAQTY 1205
Query: 145 TGAPYQPISSFQNTGSYAGSANYSSTYYNPAPADY 179
+ AP Q T + G Y + NP PA Y
Sbjct: 1206 SAAPTVQPGYVQPTPTQTG---YDQS--NPQPAGY 1295
>TC80054 SP|Q28009|FUS_BOVIN RNA-binding protein FUS (Pigpen protein).
[Bovine] {Bos taurus}, partial (4%)
Length = 988
Score = 53.9 bits (128), Expect = 3e-07
Identities = 72/278 (25%), Positives = 94/278 (32%), Gaps = 11/278 (3%)
Frame = +1
Query: 93 TANVPQD-YNAYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGAYQNTG-APYQ 150
TA Q Y+ Y P G + G NY Q P+ Y+QP Y G YQ
Sbjct: 13 TATTQQSTYDYYNQQPQQPQNPGGPAPPADGTAYNYSQPPSAGYNQPGQGYSQDGYGAYQ 192
Query: 151 --PISSFQNTGSYAGSANYSSTYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSYAS 208
P S + SY Y S +Y + G G A Q PP
Sbjct: 193 QPPQSGYAQPTSYDQQQGYGSAQEGQTTTNYGSQG-----QGDATQVPP----------- 324
Query: 209 HPHTNYTPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPGTENLSVTSSSTFGGPI 268
P G++ QQ +P A Y A + + TS + +G
Sbjct: 325 -----VQPSQQGYGSS--------QQPSPNAAKY--PPQGAAQPSYGVPPTSQTAYGSQ- 456
Query: 269 PAATSGYATPNSQPQQSYPPYWRQDSSASAV-----PSFQPAAINSGDHDGYWNHGAQTS 323
P SGY P +Q PP + Q S +A P + P + GY G S
Sbjct: 457 PQTQSGYGPPQTQKPSGTPPAYGQSQSPNAAGGYGQPGYPP---SQPPPSGYSQPGYPPS 627
Query: 324 QIHQTNPIQPNY-QSPLDLKS-SYDNFQDQQKTVSSQG 359
Q + QP Y Q+P S SY Q S+ G
Sbjct: 628 QPPPSGYSQPGYGQAPQSYNSGSYGAGYPQAPAYSADG 741
>TC78741 weakly similar to GP|21593418|gb|AAM65385.1 unknown {Arabidopsis
thaliana}, partial (68%)
Length = 1522
Score = 51.2 bits (121), Expect = 2e-06
Identities = 58/218 (26%), Positives = 99/218 (44%), Gaps = 36/218 (16%)
Frame = +3
Query: 723 KRYLRLTSAPD--PATVRPEEVLEKAL--LMVQNSQKNYLYKC------DQLKSIRQDLT 772
K++ R S D + +RP VLE L L+ K + ++ D+ +SIRQDLT
Sbjct: 345 KKFCRTISIKDVQASDMRPLNVLEDTLNYLLGLLDSKEHPFEVVHDFIFDRTRSIRQDLT 524
Query: 773 VQRIRNQLTVKVYE--------THARFAMEAGD----------LSEYNQCQSQLTALY-- 812
+Q I N+ + +YE +H + GD + + + S L LY
Sbjct: 525 MQNIVNKKAIYMYEGMVKFHVISHHKLWGSMGDPNIASTHHLNMEQLTKTLSSLFNLYEA 704
Query: 813 ---ADGIEGSYMEF-AAYNLLCVIMHSNNNRDLLSS-MTRLSDEAKKDEAVKHALAVRAA 867
++ + + EF + Y LL + HS + LS + +S K + ++ A + +
Sbjct: 705 NRNSNDVHENEAEFHSLYVLLNLGSHSKPMGEPLSLWFSHVSTSILKSKEMRFARRIVRS 884
Query: 868 VTSGNYVAFFR-LYKEAPNLNTCLMDLYVEKMRYKAVS 904
GNY+ FF + EA L C+M+ Y+ ++R A+S
Sbjct: 885 FRMGNYIDFFHTVAAEASYLQYCIMEPYINEVRSLALS 998
>TC86392 weakly similar to GP|8778551|gb|AAF79559.1| F22G5.35 {Arabidopsis
thaliana}, partial (29%)
Length = 1274
Score = 41.2 bits (95), Expect = 0.002
Identities = 52/159 (32%), Positives = 65/159 (40%), Gaps = 3/159 (1%)
Frame = +2
Query: 27 GQNQPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQDGQNVSSV-- 84
G++ PP P+ P SQ + N NP HP P S N S V
Sbjct: 470 GRSPPP---PSPPISQMFDY-------NNTIPNP------HPNPNPNS----SNPSFVYY 589
Query: 85 AGNSSNLGTANV-PQDYNAYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGAYQ 143
GNSS+ + P YN YT+Y S N Y GS + GYY P GAY
Sbjct: 590 RGNSSSAPSPPPSPSPYNYYTNY--SDNNYSGGSY-FPGYY-------------PGGAY- 718
Query: 144 NTGAPYQPISSFQNTGSYAGSANYSSTYYNPAPADYQTT 182
P P F+ TGSYA +A S AP +Y ++
Sbjct: 719 ----PPPPRPFFERTGSYAAAAGPSGP---SAPLEYSSS 814
>TC77708 weakly similar to GP|18266654|gb|AAL67600.1 unknown protein {Oryza
sativa}, partial (30%)
Length = 1593
Score = 39.3 bits (90), Expect = 0.008
Identities = 42/156 (26%), Positives = 71/156 (44%), Gaps = 6/156 (3%)
Frame = -2
Query: 367 PPPLPPPPQQVVSTPIQSAPSLDAKRVSKM-QIPTNPRIASNLTYGQPKIEKDSSTTNTA 425
PPP PP + PI S PS A+ +S + P++P++ + SS T T
Sbjct: 917 PPPFPP-----LQPPIPSTPSPFARYISLLPTFPSSPKLTLK------TLSFTSSFTTTP 771
Query: 426 LKPAYLAVSLPKSTEKISSNDAANSILKPGMFPKSLRGYVERALTRCKDDKQMKACQAVM 485
L A L +L KS+ SS+ + +S KP F + G V A C + ++ ++
Sbjct: 770 L--AVLFSTLLKSSSYPSSSKSVSSSRKPVCFEREKDGMVSSAKPLCLTEYLLEEESILL 597
Query: 486 KEMI-----TKATADGTLCTRNWDMEPLFPMPDSDV 516
+++ +K +D TL + PLF + S++
Sbjct: 596 LQLVA*AKSSKFPSD*TLL-----INPLFCLSRSEM 504
>TC89571 similar to GP|18087662|gb|AAL58954.1 putative RNA-binding protein
{Oryza sativa}, partial (5%)
Length = 1097
Score = 38.1 bits (87), Expect = 0.017
Identities = 55/229 (24%), Positives = 78/229 (34%), Gaps = 43/229 (18%)
Frame = +3
Query: 13 PAQPHQFENRHFDPGQNQPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPG 72
P+ PH +++ + Q Q PSY + + A + T G T +H P
Sbjct: 411 PSLPH--DDKLYGLQQYQYPSYYQPSASANGTYGATANKTNVHGGKTSTPVTAEHV--PS 578
Query: 73 RSIQDGQNVSSVAGNSSNLGTANVPQDYNAYTSYPSSSNPYG-YGS-------------- 117
+ G + G SSN +N Y +Y S G YG+
Sbjct: 579 SVMNKGSTTTMTNGYSSNNNVSNDSYQRAGYAAYAPVSGYAGTYGTQPSYPSDPLLFSDR 758
Query: 118 ----AGYTGYYN------NYQQQPNQTYSQPVGAYQNT---GAPYQPISSFQNT------ 158
TGY ++ Q N + SQP+ Y N + P S + N
Sbjct: 759 QSKNGSKTGYSTPAVPRKDFSSQRNSSLSQPLPQYSNLHGYSSGLGPYSGYPNGMYPSNT 938
Query: 159 ------GSYAGSANYSSTYYNPAPADYQTTGVYQN---STGYANQAPPW 198
+Y G +NY STY + TG Y N ST Y PW
Sbjct: 939 MYSQYGNTYRGRSNYGSTYGS-------RTGSYDNKYRSTSYG----PW 1052
>TC80881 similar to PIR|T11622|T11622 extensin class 1 precursor - cowpea,
partial (34%)
Length = 597
Score = 38.1 bits (87), Expect = 0.017
Identities = 20/53 (37%), Positives = 25/53 (46%), Gaps = 1/53 (1%)
Frame = +3
Query: 362 LYLPPPPPLP-PPPQQVVSTPIQSAPSLDAKRVSKMQIPTNPRIASNLTYGQP 413
+Y PPPP P PPP V +P +PS V K P +P + N Y P
Sbjct: 348 VYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSLPPNYVYKSP 506
Score = 36.2 bits (82), Expect = 0.065
Identities = 20/53 (37%), Positives = 24/53 (44%), Gaps = 1/53 (1%)
Frame = +3
Query: 362 LYLPPPPPLP-PPPQQVVSTPIQSAPSLDAKRVSKMQIPTNPRIASNLTYGQP 413
+Y PPPP P PPP V +P +PSL V K P +P Y P
Sbjct: 396 VYKSPPPPSPSPPPPYVYKSPPPPSPSLPPNYVYKSPPPPSPSPPPPYVYKSP 554
Score = 29.6 bits (65), Expect = 6.0
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +2
Query: 365 PPPPPLPPPPQQVVSTP--IQSAPSLDAKRVSKMQIPTNPRIASNLTYGQPKIEKDSSTT 422
PPP P PPPP P +S P S +++ S++++ P I STT
Sbjct: 245 PPPSPSPPPPYVHKYPPYYYKSPPPPSPFTTSSIRLQVT---TSSISFTSPTICL*ESTT 415
Query: 423 NTALKPAYLAVSLPKSTEKISS 444
++ + + + ST ++S
Sbjct: 416 TLSITTTSICLQVSASTITLTS 481
>TC92553 similar to PIR|T39903|T39903 serine-rich protein - fission yeast
(Schizosaccharomyces pombe), partial (6%)
Length = 627
Score = 37.7 bits (86), Expect = 0.022
Identities = 33/119 (27%), Positives = 52/119 (42%), Gaps = 11/119 (9%)
Frame = +2
Query: 354 TVSSQGTNLYLPPPPPLPPPPQQVVSTPIQSAPSLDAKRVSKMQ---IPTNPRIASNLTY 410
T SS +L LPP P PP S+P S +LD K+++ +Q IPT+ + +Y
Sbjct: 68 TTSSSSPSLPLPPTPSPTSPP----SSPTTSKTTLDPKQITALQSLNIPTSKDPCTQPSY 235
Query: 411 --------GQPKIEKDSSTTNTALKPAYLAVSLPKSTEKISSNDAANSILKPGMFPKSL 461
+P S T + L+ + KS ++S + N + P FP+ L
Sbjct: 236 HNATLCDSSKPFRHLISLTLSNCTSHLSLSFTALKSLSTLTSLNLINCPISPFHFPQEL 412
>TC89554 similar to GP|13605675|gb|AAK32831.1 AT5g62640/MRG21_6 {Arabidopsis
thaliana}, partial (50%)
Length = 1467
Score = 37.7 bits (86), Expect = 0.022
Identities = 22/87 (25%), Positives = 35/87 (39%), Gaps = 26/87 (29%)
Frame = +2
Query: 364 LPPPPPLPPPPQQVVSTPIQSAP--------------------------SLDAKRVSKMQ 397
LPPPPP PPP +Q V+ P+ P +L +K ++Q
Sbjct: 749 LPPPPPGPPPKEQAVNRPLPPPPPPLKHSQPPPPGTSEGEERNQYALPDNLSSKEPGQVQ 928
Query: 398 IPTNPRIASNLTYGQPKIEKDSSTTNT 424
+P P S++ I+ D + +T
Sbjct: 929 LPPPPPPPSHMPQNSGAIQSDGAVVST 1009
>BG581317 homologue to OMNI|NTL01EC003 IS2 hypothetical protein {Escherichia
coli K12-MG1655}, partial (55%)
Length = 808
Score = 37.4 bits (85), Expect = 0.029
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 25/152 (16%)
Frame = +2
Query: 152 ISSFQNTGSYAGSANYSSTYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSYASHP- 210
+SS + S +Y+S Y YQ + QN N PP ++ + YAS P
Sbjct: 41 VSSINSLRSTMHQGDYTSAPY------YQFPHMQQNPNPIPNPTPPQSDPIPNHYASAPP 202
Query: 211 -----------------HTNYTPDSNSS----GAATTSVQYQQQQQ--NPWADYYNQTEV 247
+ ++ P SN S +++ YQQ Q P D +QT +
Sbjct: 203 FTPNYDYSSTYSPYPPHNPDHVPSSNPSFNPPPFESSNPLYQQPSQPYYPPYDQQHQTPL 382
Query: 248 SCAPGTENLSVTSSSTFG-GPIPAATSGYATP 278
+ AP N ++ +SS + PIP+ + Y P
Sbjct: 383 NYAPPNPNPNLYNSSPYSVPPIPSYETSYENP 478
>TC90952 similar to GP|15724316|gb|AAL06551.1 AT4g34150/F28A23_90
{Arabidopsis thaliana}, partial (49%)
Length = 1046
Score = 37.0 bits (84), Expect = 0.038
Identities = 43/158 (27%), Positives = 56/158 (35%), Gaps = 9/158 (5%)
Frame = +2
Query: 158 TGSYAGSANYSSTYYNP---APADYQTTGVYQNS--TGYANQAPPWNNGSYSSYASHPHT 212
TG +AG Y N A ++Q G ++ T A P N S Y PH+
Sbjct: 290 TGRHAGEVKLILHYTNANANAKVNHQKPGSSSHTPYTAMPTPAVPSYNHVPSYYPQKPHS 469
Query: 213 NY----TPDSNSSGAATTSVQYQQQQQNPWADYYNQTEVSCAPGTENLSVTSSSTFGGPI 268
NY TP + P + Y VS + S S+ P
Sbjct: 470 NYHHPTTPAVAYPQPPPYPASHNPSSYPPSSTYPYPQSVSSPYPPPSSSSPYPSSVPSPY 649
Query: 269 PAATSGYATPNSQPQQSYPPYWRQDSSASAVPSFQPAA 306
P +S +P P SYPP SSA PS+ P A
Sbjct: 650 PPTSSSSPSPYPPPH-SYPP-----SSAYPPPSYPPPA 745
>BG646467 similar to SP|O64668|PSNH Presenilin homolog. [Mouse-ear cress]
{Arabidopsis thaliana}, partial (49%)
Length = 796
Score = 37.0 bits (84), Expect = 0.038
Identities = 27/111 (24%), Positives = 49/111 (43%), Gaps = 2/111 (1%)
Frame = +1
Query: 352 QKTVSSQGTNLYLPPPPP--LPPPPQQVVSTPIQSAPSLDAKRVSKMQIPTNPRIASNLT 409
Q SS ++ L PPPP PP P ++S+ +++ PT P S
Sbjct: 115 QSACSSSFSSSTLSPPPPHRKPPSPPPLISSTLKTP-------------PTPPHKNSKAH 255
Query: 410 YGQPKIEKDSSTTNTALKPAYLAVSLPKSTEKISSNDAANSILKPGMFPKS 460
+ P SS ++ + ++ + P S+ +S++ ++S L P + P S
Sbjct: 256 FSTPSFSSSSSPSSPSFSSSFTTTTAPPSSVTMSASPPSSSSL-PWVDPSS 405
>TC83143
Length = 1277
Score = 37.0 bits (84), Expect = 0.038
Identities = 58/258 (22%), Positives = 85/258 (32%), Gaps = 42/258 (16%)
Frame = +1
Query: 27 GQNQPPSYAPT---------TPGSQAVSWAVQSS----------TANGGYSNP------- 60
G + PPS P+ T SQ QSS T GG NP
Sbjct: 436 GVHSPPSEFPSQMAAPQRYQTRSSQVAGTHNQSSGFQNSPPHFDTRIGGTHNPLSEFPSQ 615
Query: 61 TYQYDQHPQPPGRSIQDGQNVSSVAGNSSNLGTANVPQDYNAYTSYPSSSNPYGYGSAGY 120
T Y ++ P + + N S NS + +N + +PS
Sbjct: 616 TAAYQRYQTSPSQ-VAGTHNQPSGFQNSPPHFDTQIGGTHNLLSEFPSQ----------- 759
Query: 121 TGYYNNYQQQPNQ---TYSQPVGAYQNTGAPYQPISSFQNTGSYAGSANYSSTYYNPAPA 177
T + YQ P+Q T++QP G A P +T N+ S+ Y P +
Sbjct: 760 TAAHQRYQTSPSQVAGTHNQPSGFLAQMAAQNSP--PHFDTRMAGADNNHFSSGYPPQIS 933
Query: 178 DYQTTGVYQNSTGYANQ-----APPWNNGSY--------SSYASHPHTNYTPDSNSSGAA 224
Q + TG +Q +PP N + HP +TP +
Sbjct: 934 GQQRPPLSPQMTGIHHQTPWGVSPPMNRSQMPTTGPSHLTGQPHHPQYQHTPRMQRASPQ 1113
Query: 225 TTSVQYQQQQQNPWADYY 242
+T+ Y +P D Y
Sbjct: 1114STAKPYTPYGPSPQIDGY 1167
>TC86542 weakly similar to GP|19698991|gb|AAL91231.1 EF-hand calcium binding
protein-like {Arabidopsis thaliana}, partial (23%)
Length = 1085
Score = 36.6 bits (83), Expect = 0.049
Identities = 34/118 (28%), Positives = 50/118 (41%)
Frame = +2
Query: 89 SNLGTANVPQDYNAYTSYPSSSNPYGYGSAGYTGYYNNYQQQPNQTYSQPVGAYQNTGAP 148
S+ G N PQ Y S P P + YT NY Q P +Y+ N P
Sbjct: 47 SSYGRYNSPQSYAP--SAPELPPP-----SNYTSQNTNYTQPPPPSYN-------NYTQP 184
Query: 149 YQPISSFQNTGSYAGSANYSSTYYNPAPADYQTTGVYQNSTGYANQAPPWNNGSYSSY 206
P S++ + +Y S SS+ Y P+ + Y + +S+GY+N P N S+
Sbjct: 185 PPPSSNYNHPHNYPPS-QVSSSGYPPSSSGYPPS----SSSGYSNFPPGTNQDVIRSF 343
Score = 30.8 bits (68), Expect = 2.7
Identities = 21/86 (24%), Positives = 32/86 (36%), Gaps = 3/86 (3%)
Frame = +2
Query: 29 NQPPSYAPTTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQPPGRSIQDGQNVSSVAGNS 88
N P SYAP+ P S +T P+Y P PP + N +S
Sbjct: 65 NSPQSYAPSAPELPPPSNYTSQNTNYTQPPPPSYNNYTQPPPPSSNYNHPHNYPPSQVSS 244
Query: 89 SNL---GTANVPQDYNAYTSYPSSSN 111
S + P + Y+++P +N
Sbjct: 245 SGYPPSSSGYPPSSSSGYSNFPPGTN 322
>TC85621 similar to PIR|C96597|C96597 Rubisco subunit binding-protein beta
subunit [imported] - Arabidopsis thaliana, partial (51%)
Length = 2960
Score = 36.2 bits (82), Expect = 0.065
Identities = 43/169 (25%), Positives = 67/169 (39%), Gaps = 11/169 (6%)
Frame = +1
Query: 37 TTPGSQAVSWAVQSSTANGGYSNPTYQYDQHPQP----PGRSIQDGQ------NVSSVAG 86
T G+ V+ ++ T+ GGY +P Y +D P DGQ V S +
Sbjct: 826 TNAGTNGVNAKGRTPTS-GGYQDPRYGFDGARSPNLWLDTPIFSDGQPRPVSSTVISSSI 1002
Query: 87 NSSNLGTANVPQDYNAYTSYPSSSNPYGYGSAGYT-GYYNNYQQQPNQTYSQPVGAYQNT 145
+S N GTA+ Q Y + Y +P + G T G+ N + PN Y G Y N+
Sbjct: 1003SSGNNGTASRNQTYRPNSQYMGLHHPRPIPAMGATPGFIN--RMYPNTRY----GQYGNS 1164
Query: 146 GAPYQPISSFQNTGSYAGSANYSSTYYNPAPADYQTTGVYQNSTGYANQ 194
+ S G++ + + + Y+T G GY N+
Sbjct: 1165------VRSGMGYGTHGYDSRTNGRAWLAVDNKYKTRGRNGGYFGYGNE 1293
>BQ144314 weakly similar to GP|21322711|em pherophorin-dz1 protein {Volvox
carteri f. nagariensis}, partial (6%)
Length = 1154
Score = 36.2 bits (82), Expect = 0.065
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 363 YLPPPPPLPPPPQQVVSTP 381
+LPPPPPLPPPP + TP
Sbjct: 27 FLPPPPPLPPPPPPKLPTP 83
>BI264438 similar to GP|21427467|gb actin-related protein 6 {Arabidopsis
thaliana}, partial (43%)
Length = 695
Score = 35.8 bits (81), Expect = 0.084
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Frame = +1
Query: 364 LPPPPPLPPPPQQVVSTPIQSAPSLDAKRVSKMQIPTNPRIASNLTYGQPKIEKDSSTTN 423
LPPPPP PPPP + P +APS+ A PT+ I S T+ S+ +
Sbjct: 28 LPPPPP-PPPPNKTSPPPPSAAPSIAA----T*STPTSNAI-SGPTF------SPLSSAS 171
Query: 424 TALKPAYLAVSLPKSTEKISSND-AANSILKPGMFPKS 460
T L P L+ SL S+ + N + NS K +FP S
Sbjct: 172 TLLNP--LSSSLNPSSLSLPFNTLSTNSSSKISIFPLS 279
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.310 0.125 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,922,977
Number of Sequences: 36976
Number of extensions: 466285
Number of successful extensions: 7495
Number of sequences better than 10.0: 198
Number of HSP's better than 10.0 without gapping: 3830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5972
length of query: 1003
length of database: 9,014,727
effective HSP length: 106
effective length of query: 897
effective length of database: 5,095,271
effective search space: 4570458087
effective search space used: 4570458087
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0260.13