BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0260.11
(337 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG450093 similar to GP|2827705|emb| predicted protein {Arabidops... 33 0.12
TC79838 similar to GP|8164030|gb|AAF73960.1| SGS3 {Arabidopsis t... 32 0.27
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 30 1.3
BF519055 similar to GP|21592754|gb| unknown {Arabidopsis thalian... 29 2.9
TC92379 homologue to GP|6642635|gb|AAF20216.1| putative translat... 28 6.5
TC83013 similar to GP|21554159|gb|AAM63238.1 unknown {Arabidopsi... 27 8.5
TC87482 similar to PIR|E84430|E84430 probable inositol polyphosp... 27 8.5
TC85559 similar to PIR|T07012|T07012 acetyl-CoA carboxylase (EC ... 27 8.5
>BG450093 similar to GP|2827705|emb| predicted protein {Arabidopsis
thaliana}, partial (9%)
Length = 675
Score = 33.5 bits (75), Expect = 0.12
Identities = 19/53 (35%), Positives = 26/53 (48%)
Frame = -2
Query: 124 PPLFFLTHLFFYLGLHSVFPIKDLGELHYFLMKHCKSASTLMIHDFVCQMSVL 176
PP+FFL HLFF + L S F +H S ++ DF C+ SV+
Sbjct: 254 PPVFFLLHLFFQIPLSSPF-------IHLESDISISSHFPYLVRDFYCKFSVV 117
>TC79838 similar to GP|8164030|gb|AAF73960.1| SGS3 {Arabidopsis thaliana},
partial (28%)
Length = 1287
Score = 32.3 bits (72), Expect = 0.27
Identities = 27/73 (36%), Positives = 36/73 (48%), Gaps = 9/73 (12%)
Frame = -1
Query: 72 HNFISTLDKKKLYI---SSF*FFRC*VSKCDSSLSLIGLL-PV*LLFLC--FMLGYNNP- 124
H F+ DK K+ + S F C S C L + LL P+ +LFLC F++ +P
Sbjct: 843 HFFVLEFDKFKVSLHLESPFLLCICRTSSCLLHLLTLFLLHPLEILFLCISFIVDATDPF 664
Query: 125 --PLFFLTHLFFY 135
LF HLFFY
Sbjct: 663 LEELFLFIHLFFY 625
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 30.0 bits (66), Expect = 1.3
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Frame = +2
Query: 142 FPIKDLGELHYFL-MKHCKSASTLMIHDFVCQMSVLFNLT*HFVKKRSILALLSIQ-*NS 199
F IKDLG L YFL ++ +S ++++ + +L + VK +S++ NS
Sbjct: 257 FKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGNLAVKSTLTPYDISLKLHNS 436
Query: 200 FGFSFNSHDSWLYKSIVGAL------HPDIAFCVNKVCQF 233
+N D Y+ ++G L PDI+F V ++ QF
Sbjct: 437 DSPLYN--DETQYRRLIGKLIYLTTTRPDISFAVQQLSQF 550
>BF519055 similar to GP|21592754|gb| unknown {Arabidopsis thaliana}, partial
(30%)
Length = 675
Score = 28.9 bits (63), Expect = 2.9
Identities = 21/48 (43%), Positives = 26/48 (53%), Gaps = 10/48 (20%)
Frame = -3
Query: 208 DSWLYKSIVGALH------PDIAFCVNKVCQF----KQLIFLTAKKVV 245
DS L SIVGAL PD++F +NK QF Q+ F KKV+
Sbjct: 646 DSKLVHSIVGALLYITVTCPDLSFSINKPSQFMHKPTQINFQQLKKVM 503
>TC92379 homologue to GP|6642635|gb|AAF20216.1| putative translation
initiation factor EIF-2B beta subunit {Arabidopsis
thaliana}, partial (20%)
Length = 690
Score = 27.7 bits (60), Expect = 6.5
Identities = 13/31 (41%), Positives = 18/31 (57%), Gaps = 1/31 (3%)
Frame = +1
Query: 106 GLLPV*LLFLCFMLGYNN-PPLFFLTHLFFY 135
G P+ +L C + GY PP FF ++FFY
Sbjct: 487 GA*PLFILLFCPIAGYQGCPPYFFDLYIFFY 579
>TC83013 similar to GP|21554159|gb|AAM63238.1 unknown {Arabidopsis
thaliana}, partial (24%)
Length = 954
Score = 27.3 bits (59), Expect = 8.5
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Frame = +1
Query: 96 SKCDSSLSLIGLLPV*LLFLCFMLGYNNPPLFFLTH---------LFFYLG 137
S C SS + LL + LLF +L Y +PP +FL + LF +LG
Sbjct: 88 SSCTSSTRFLLLLLL-LLFCSLLLLYIHPPFYFLLYN*VDVTCLILFMWLG 237
>TC87482 similar to PIR|E84430|E84430 probable inositol
polyphosphate-5-phosphatase [imported] - Arabidopsis
thaliana, partial (72%)
Length = 1567
Score = 27.3 bits (59), Expect = 8.5
Identities = 16/45 (35%), Positives = 24/45 (52%), Gaps = 3/45 (6%)
Frame = -3
Query: 149 ELHYFLMKHCKSASTLMIH---DFVCQMSVLFNLT*HFVKKRSIL 190
EL YFL K+ + + H ++C S +F+ + HF K SIL
Sbjct: 692 ELEYFLDKYSSNLALYYHHHPFQYLCNNSDVFSCSKHF*LKNSIL 558
>TC85559 similar to PIR|T07012|T07012 acetyl-CoA carboxylase (EC 6.4.1.2) -
potato chloroplast, partial (66%)
Length = 5011
Score = 27.3 bits (59), Expect = 8.5
Identities = 18/61 (29%), Positives = 32/61 (51%), Gaps = 5/61 (8%)
Frame = -1
Query: 97 KCDSSLSLIGLLPV*LLFLCF--MLGYNNPPLFFLTHLFFYLGL---HSVFPIKDLGELH 151
KC+ S +I +L + LLF F LG++ P+ ++ LF+ L S+ P+ + L
Sbjct: 3274 KCEKSFLIIPVLSISLLFWTFSLSLGFSIIPVLSISLLFWTFSLSLGFSIIPVLSISLLF 3095
Query: 152 Y 152
+
Sbjct: 3094 W 3092
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.364 0.164 0.596
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,501,950
Number of Sequences: 36976
Number of extensions: 210812
Number of successful extensions: 3167
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1797
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 1327
Number of HSP's gapped (non-prelim): 2027
length of query: 337
length of database: 9,014,727
effective HSP length: 97
effective length of query: 240
effective length of database: 5,428,055
effective search space: 1302733200
effective search space used: 1302733200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0260.11