TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0258a.2
         (167 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC80287 weakly similar to GP|12667516|gb|AAG61157.1 DBC2 {Homo s...   179  6e-46
TC93070 weakly similar to GP|17065230|gb|AAL32769.1 Unknown prot...    34  0.024
TC92205 similar to GP|12723779|gb|AAK04950.1 UNKNOWN PROTEIN {La...    33  0.070
TC76936 similar to GP|20160782|dbj|BAB89723. putative nascent po...    33  0.070
TC91658 similar to GP|14329812|emb|CAC40753. putative nucleosome...    33  0.070
BG582452 similar to GP|21593180|gb| putative DNA-binding protein...    32  0.091
TC76415 similar to PIR|T05479|T05479 hypothetical protein T8O5.1...    31  0.27
TC80072 similar to GP|14423520|gb|AAK62442.1 Unknown protein {Ar...    30  0.35
BF641220 weakly similar to PIR|G86203|G86 probable N-arginine di...    30  0.35
TC91436 weakly similar to GP|21593499|gb|AAM65466.1 putative nod...    30  0.45
TC77681 similar to GP|22597156|gb|AAN03465.1 nucleolar histone d...    30  0.45
AW690594 similar to GP|23498163|emb hypothetical protein {Plasmo...    30  0.45
AJ502594 weakly similar to PIR|T05755|T057 hypothetical protein ...    30  0.59
TC86045 similar to PIR|T46225|T46225 alpha NAC-like protein - Ar...    29  0.77
AL381331 weakly similar to GP|14209525|dbj contains ESTs C73715(...    29  1.0
TC82470 homologue to GP|23497460|gb|AAN37003.1 hypothetical prot...    29  1.0
AW774261 weakly similar to EGAD|146423|156 vitellogenin {Anolis ...    28  1.3
BE248780 similar to GP|5929884|gb|A nucleolin-related protein NR...    28  1.3
TC83157 similar to GP|21595368|gb|AAM66095.1 unknown {Arabidopsi...    28  1.3
TC92637 similar to PIR|T39903|T39903 serine-rich protein - fissi...    28  1.3

>TC80287 weakly similar to GP|12667516|gb|AAG61157.1 DBC2 {Homo sapiens},
           partial (4%)
          Length = 779

 Score =  179 bits (453), Expect = 6e-46
 Identities = 100/184 (54%), Positives = 125/184 (67%), Gaps = 17/184 (9%)
 Frame = -3

Query: 1   MENQP-----MQFLLLEQVQFLKVQDDSLLQWELVDVVDAEEEQEQEPDQNQQ------- 48
           MENQ      MQFL+LEQVQF+KV DDSLLQWELVDVVDAEE+ E+E   +         
Sbjct: 735 MENQTSSSSSMQFLILEQVQFVKVNDDSLLQWELVDVVDAEEQSEEEERVDDDGDSFISW 556

Query: 49  -DAAPV-EEIKIIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAYED---DEEQVVDDEED 103
            D++ + + I+++   R  L DP       ++   +H++ GY+ E    D++   DDE +
Sbjct: 555 SDSSRIGDPIELLTHRRIHLDDP-------VENHHHHHV-GYSEEQVNHDDDDDDDDESE 400

Query: 104 DDDRCDLDDELVPWEVGNKLGRQRMKKLGKRACSKMKNSKRSPYLFVRPGCVGGKHGLGL 163
           DD   DLDDELVPW++GNKLGRQRM+KLGKR  SKM NSKRSP LFVRPGCV GKHG+GL
Sbjct: 399 DDGDDDLDDELVPWDIGNKLGRQRMRKLGKRVSSKMNNSKRSPILFVRPGCVRGKHGMGL 220

Query: 164 KHSF 167
           KH F
Sbjct: 219 KHCF 208


>TC93070 weakly similar to GP|17065230|gb|AAL32769.1 Unknown protein
           {Arabidopsis thaliana}, partial (19%)
          Length = 679

 Score = 34.3 bits (77), Expect = 0.024
 Identities = 14/24 (58%), Positives = 19/24 (78%)
 Frame = +1

Query: 90  YEDDEEQVVDDEEDDDDRCDLDDE 113
           +EDDE++  D++EDDDD  D DDE
Sbjct: 250 FEDDEDEDEDEDEDDDDDDDDDDE 321



 Score = 31.2 bits (69), Expect = 0.20
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 91  EDDEEQVVDDEEDDDDRCDLDDE--LVPWEVGNKLGRQRMKKLGKRACSKMK 140
           ED++E   DD++DDDD  D DD+    P ++  K  R + K +  R   K K
Sbjct: 268 EDEDEDEDDDDDDDDDDEDDDDDGFAEPTDLNAKDKRLKSKTVPDRQQEKEK 423


>TC92205 similar to GP|12723779|gb|AAK04950.1 UNKNOWN PROTEIN {Lactococcus
           lactis subsp. lactis}, partial (2%)
          Length = 640

 Score = 32.7 bits (73), Expect = 0.070
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +3

Query: 34  DAEEEQEQEPDQNQQD--AAPVEEIKIIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAYE 91
           D +E+ + +P Q Q D   A       IH++    P P+A  V    + Q        Y+
Sbjct: 378 DDDEDDDWDPSQKQADDGVAQTAVSDSIHEVSEANPQPNAKRV----KVQKELTFQDLYQ 545

Query: 92  DDEEQVVDDEEDDD 105
             E    DDEEDDD
Sbjct: 546 SQELFDEDDEEDDD 587


>TC76936 similar to GP|20160782|dbj|BAB89723. putative nascent polypeptide
           associated complex alpha chain {Oryza sativa (japonica
           cultivar-group)}, partial (86%)
          Length = 914

 Score = 32.7 bits (73), Expect = 0.070
 Identities = 17/70 (24%), Positives = 37/70 (52%)
 Frame = +3

Query: 70  DAVAVVEIDRQQYHYLHGYAYEDDEEQVVDDEEDDDDRCDLDDELVPWEVGNKLGRQRMK 129
           + +    +++Q+ H+      EDD+++  +D+EDDDD  D + E    +   +  + R +
Sbjct: 93  EELLAAHLEQQKIHHDEPVV-EDDDDEDDEDDEDDDDEDDDNAEGFEGDASGRSKQTRSE 269

Query: 130 KLGKRACSKM 139
           K  ++A  K+
Sbjct: 270 KKSRKAMLKL 299


>TC91658 similar to GP|14329812|emb|CAC40753. putative nucleosome assembly
           protein 1 {Atropa belladonna}, partial (46%)
          Length = 583

 Score = 32.7 bits (73), Expect = 0.070
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +2

Query: 91  EDDEEQVVDDEEDDDDRCDLDDELVPWEVGNKLGRQRMKKLGKRACSKMKNSKR 144
           + DEE   DD++DDDD  D DDE    E     G+ + K+  K    K ++++R
Sbjct: 101 DGDEEDDDDDDDDDDDEEDEDDE----EEDEGKGKSKSKRGSKAKPGKDQSTER 250



 Score = 28.5 bits (62), Expect = 1.3
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +2

Query: 91  EDDEEQVVDDEEDDDDRCDLDDE 113
           EDDE+   D+E+DDDD  D DDE
Sbjct: 89  EDDEDG--DEEDDDDDDDDDDDE 151


>BG582452 similar to GP|21593180|gb| putative DNA-binding protein
           {Arabidopsis thaliana}, partial (29%)
          Length = 762

 Score = 32.3 bits (72), Expect = 0.091
 Identities = 24/59 (40%), Positives = 30/59 (50%)
 Frame = +2

Query: 99  DDEEDDDDRCDLDDELVPWEVGNKLGRQRMKKLGKRACSKMKNSKRSPYLFVRPGCVGG 157
           DDEE+DDD  D   E    EVGN+  R R   + K+  +    +KR P  F  P C GG
Sbjct: 533 DDEEEDDDNRDEPREGAV-EVGNRRPRGRPPWIQKQTKTTYLCNKR*PKCFEEP-CHGG 703


>TC76415 similar to PIR|T05479|T05479 hypothetical protein T8O5.180 -
           Arabidopsis thaliana, partial (30%)
          Length = 1114

 Score = 30.8 bits (68), Expect = 0.27
 Identities = 25/72 (34%), Positives = 35/72 (47%), Gaps = 15/72 (20%)
 Frame = +1

Query: 86  HGYAYEDDEEQVV----DDEEDDDDRCDLDDELVPWE-VGNKLGRQRM----------KK 130
           +GY YE D+E V     D EEDDDD  +    + P E +  +L R ++          + 
Sbjct: 580 YGY-YEGDDEVVYHGGEDGEEDDDDDDEYSTRVPPHEIISRRLARSQISSFSVFEGVGRT 756

Query: 131 LGKRACSKMKNS 142
           L  R  SKM+NS
Sbjct: 757 LKGRDLSKMRNS 792


>TC80072 similar to GP|14423520|gb|AAK62442.1 Unknown protein {Arabidopsis
           thaliana}, partial (17%)
          Length = 746

 Score = 30.4 bits (67), Expect = 0.35
 Identities = 22/79 (27%), Positives = 40/79 (49%), Gaps = 2/79 (2%)
 Frame = +1

Query: 54  EEIKIIHQIRPVLP-DPDAVAVVEIDRQQYHYLHGYAYEDDE-EQVVDDEEDDDDRCDLD 111
           +EI I H+ R ++P D +A +    +  +    +    ++DE ++  D+EEDDDD  D  
Sbjct: 367 DEIDIFHKQRDIVPLDINADSAESDEDDEMPIFNDKDIDNDETDEDGDEEEDDDDEDDEY 546

Query: 112 DELVPWEVGNKLGRQRMKK 130
           D      +G  + +Q+  K
Sbjct: 547 DGKEKGFIGQLIRQQKYLK 603


>BF641220 weakly similar to PIR|G86203|G86 probable N-arginine dibasic
           convertase [imported] - Arabidopsis thaliana, partial
           (5%)
          Length = 634

 Score = 30.4 bits (67), Expect = 0.35
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 91  EDDEEQVVDDEEDDDDRCDLDDE 113
           E+D+E   DDEEDDD+  D +DE
Sbjct: 374 EEDDEDEEDDEEDDDEGEDDEDE 442



 Score = 26.9 bits (58), Expect = 3.8
 Identities = 14/23 (60%), Positives = 18/23 (77%)
 Frame = +2

Query: 91  EDDEEQVVDDEEDDDDRCDLDDE 113
           EDDEE+  DDE+++DD  D DDE
Sbjct: 362 EDDEEE--DDEDEEDDEED-DDE 421


>TC91436 weakly similar to GP|21593499|gb|AAM65466.1 putative nodulin
           protein  N21 {Arabidopsis thaliana}, partial (16%)
          Length = 909

 Score = 30.0 bits (66), Expect = 0.45
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 82  YHYLHGYAYEDDEEQVVDDEEDDDDRCDLDDELV 115
           Y  L G + E D  +V D  +DDDD  D DDE +
Sbjct: 480 YSVLWGKSKEVDNNKVEDATDDDDDDDDDDDEAI 581


>TC77681 similar to GP|22597156|gb|AAN03465.1 nucleolar histone deacetylase
           HD2-P39 {Glycine max}, partial (47%)
          Length = 1233

 Score = 30.0 bits (66), Expect = 0.45
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
 Frame = +2

Query: 35  AEEEQEQEPDQ-NQQDAAPVEEIKIIHQIRPVLP-DPDAVAVVEIDRQQYHYLHGYAYED 92
           AEE +  EP + + ++AAP +       ++ V P D D+    E D +           D
Sbjct: 464 AEELKVSEPKKADAKNAAPAKNAATAKHVKVVDPKDEDSDDDDESDDE-------IGSSD 622

Query: 93  DEEQVVD-DEEDDDDRCDLDDELVPWEVGNKLGRQRMKKLGKRACSKMKNSKRSP 146
           DE +  D D ED+DD  + D+E  P +  ++  ++  +   K   S  K+   +P
Sbjct: 623 DEMENADSDSEDEDDSDEDDEEETPVKKVDQGKKRPNESASKTPISSKKSKNATP 787


>AW690594 similar to GP|23498163|emb hypothetical protein {Plasmodium
           falciparum 3D7}, partial (10%)
          Length = 633

 Score = 30.0 bits (66), Expect = 0.45
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = +3

Query: 37  EEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAYEDDEEQ 96
           EE+E E D+ ++D    EE                    E + ++    H    E++EE+
Sbjct: 81  EEEEDEHDEEEEDEHDEEE-------------------EEEEEEEEEDEHDDEEEEEEEE 203

Query: 97  VVDDEEDDDDRCDLDD 112
             ++EEDDD+  + D+
Sbjct: 204 EEEEEEDDDEEGEEDE 251


>AJ502594 weakly similar to PIR|T05755|T057 hypothetical protein M4I22.120 -
           Arabidopsis thaliana, partial (41%)
          Length = 353

 Score = 29.6 bits (65), Expect = 0.59
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +3

Query: 92  DDEEQVVDDEEDDDDRCDLDDELVPWE 118
           +DE+   DD++DD +  D ++++VPW+
Sbjct: 273 NDEDNDQDDDDDDTEDDDEENQVVPWK 353


>TC86045 similar to PIR|T46225|T46225 alpha NAC-like protein - Arabidopsis
           thaliana, partial (69%)
          Length = 1166

 Score = 29.3 bits (64), Expect = 0.77
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 91  EDDEEQVVDDEEDDDDRCDLD-DELVPWEVGNKLGRQRMKKLGKRACSKM 139
           +DD++   DD+EDDDD  D D ++ +    G+K  + R +K  ++A  K+
Sbjct: 229 KDDDKDDEDDDEDDDDEDDDDKEDALAGADGSK--QSRSEKKSRKAMLKL 372



 Score = 26.6 bits (57), Expect = 5.0
 Identities = 11/23 (47%), Positives = 16/23 (68%)
 Frame = +1

Query: 91  EDDEEQVVDDEEDDDDRCDLDDE 113
           ED ++   DDE+DD+D  D DD+
Sbjct: 220 EDVKDDDKDDEDDDEDDDDEDDD 288


>AL381331 weakly similar to GP|14209525|dbj contains ESTs C73715(E20247)
           C99497(E20247)~similar to Arabidopsis thaliana
           chromosome 2  At2g20670~, partial (14%)
          Length = 475

 Score = 28.9 bits (63), Expect = 1.0
 Identities = 13/32 (40%), Positives = 20/32 (61%)
 Frame = +2

Query: 92  DDEEQVVDDEEDDDDRCDLDDELVPWEVGNKL 123
           +DEE  +DDEED+D  C ++     WE  ++L
Sbjct: 107 NDEE--IDDEEDEDSVCTIEKNKAFWEEQDQL 196


>TC82470 homologue to GP|23497460|gb|AAN37003.1 hypothetical protein
           {Plasmodium falciparum 3D7}, partial (8%)
          Length = 1064

 Score = 28.9 bits (63), Expect = 1.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 90  YEDDEEQVVDDEEDDDDRCDLDDE 113
           Y+DD++   DD++DDDD  D+  +
Sbjct: 32  YDDDDDDDDDDDDDDDDDDDMSTD 103



 Score = 26.2 bits (56), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (61%)
 Frame = +2

Query: 88  YAYEDDEEQVVDDEEDDDDRCDLD 111
           Y  +DD++   DD++DDDD    D
Sbjct: 32  YDDDDDDDDDDDDDDDDDDDMSTD 103


>AW774261 weakly similar to EGAD|146423|156 vitellogenin {Anolis pulchellus},
           partial (40%)
          Length = 495

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 19/81 (23%), Positives = 38/81 (46%)
 Frame = +1

Query: 33  VDAEEEQEQEPDQNQQDAAPVEEIKIIHQIRPVLPDPDAVAVVEIDRQQYHYLHGYAYED 92
           +D EEE + E +  + +   VEE + + +I   + + +  A  E              E+
Sbjct: 289 IDLEEENDPEEEMEEIEYEEVEEEEEVEEIEEEVEENEEDAEEE--------------EE 426

Query: 93  DEEQVVDDEEDDDDRCDLDDE 113
           + E+  ++ E+DD   +LDD+
Sbjct: 427 E*EKEEEEVEEDDTMQNLDDD 489


>BE248780 similar to GP|5929884|gb|A nucleolin-related protein NRP {Rattus
           norvegicus}, partial (4%)
          Length = 561

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 79  RQQYHYLHGYAYEDDEEQVVDDEEDDDDRCDLDDE 113
           +Q  H   G  +E ++E    D +DDDD  D D+E
Sbjct: 290 KQDDHIKEGGTHEIEDEDDDSDGDDDDDDDDYDEE 394


>TC83157 similar to GP|21595368|gb|AAM66095.1 unknown {Arabidopsis
           thaliana}, partial (57%)
          Length = 1108

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 79  RQQYHYLHGYAYEDDEEQVVDDEEDDDDRCDLDDE 113
           +Q  H   G  +E ++E    D +DDDD  D D+E
Sbjct: 297 KQDDHIKEGGTHEIEDEDDDSDGDDDDDDDDYDEE 401


>TC92637 similar to PIR|T39903|T39903 serine-rich protein - fission yeast
           (Schizosaccharomyces pombe), partial (7%)
          Length = 671

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +1

Query: 91  EDDEEQVVDDEEDDDDRCDLDDELVPWEVGNKLGRQRMKKLGKRACS 137
           +DD E+V +DEE+D++  D DD    ++ G K G  R ++  K + S
Sbjct: 445 DDDAEEVDEDEEEDEEDYDDDD----YDGGGK-GSSRKRQYRKVSAS 570


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.316    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,165,862
Number of Sequences: 36976
Number of extensions: 68901
Number of successful extensions: 966
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of query: 167
length of database: 9,014,727
effective HSP length: 89
effective length of query: 78
effective length of database: 5,723,863
effective search space: 446461314
effective search space used: 446461314
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)