TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0252b.2
         (515 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC84935 similar to PIR|G96631|G96631 probable RNA-binding protei...    47  1e-05
TC77756 similar to PIR|T06796|T06796 glycine-rich RNA-binding pr...    47  2e-05
TC79394 weakly similar to PIR|T49019|T49019 probable RNA binding...    46  4e-05
TC76334 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein...    45  9e-05
BF643563 similar to GP|13877739|gb unknown protein {Arabidopsis ...    44  1e-04
TC77695 similar to PIR|T09704|T09704 probable arginine/serine-ri...    44  2e-04
AL371197 homologue to GP|6273331|gb| glycine-rich RNA binding pr...    43  3e-04
TC76556 similar to PIR|S71779|S71779 glycine-rich RNA-binding pr...    43  3e-04
TC79604 similar to GP|18175762|gb|AAL59923.1 unknown protein {Ar...    43  3e-04
TC77694 homologue to PIR|T09704|T09704 probable arginine/serine-...    42  4e-04
TC89748 homologue to PIR|B84565|B84565 probable spliceosome asso...    42  6e-04
TC87209 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein...    42  6e-04
TC89001 similar to GP|5726567|gb|AAD48471.1| glycine-rich RNA-bi...    42  7e-04
TC92312 weakly similar to GP|4567275|gb|AAD23688.1| expressed pr...    41  0.001
AL374421 similar to PIR|S59529|S59 RNA-binding glycine-rich prot...    41  0.001
TC76948 similar to SP|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein...    41  0.001
CA859237 weakly similar to PIR|T45886|T458 RNA-binding protein c...    41  0.001
BE124733 similar to PIR|T06796|T06 glycine-rich RNA-binding prot...    40  0.002
TC86510 similar to GP|20160777|dbj|BAB89718. putative ribonucleo...    40  0.002
TC90113 similar to PIR|C86301|C86301 arginine/serine-rich protei...    40  0.003

>TC84935 similar to PIR|G96631|G96631 probable RNA-binding protein F8A5.17
           [imported] - Arabidopsis thaliana, partial (41%)
          Length = 552

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 23/77 (29%), Positives = 42/77 (53%)
 Frame = +2

Query: 46  LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
           +FV G+   V+  Q+   F ++G+++   +  ++  GR   FGF+ F+  +    AIK +
Sbjct: 143 IFVGGLGWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFSDRRGMEDAIKEM 322

Query: 106 DGVRLGGASLSVGLAKP 122
           DG  +G   +SV  A+P
Sbjct: 323 DGREIGDRIISVNKAQP 373


>TC77756 similar to PIR|T06796|T06796 glycine-rich RNA-binding protein -
           garden pea, partial (89%)
          Length = 813

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 28/79 (35%), Positives = 42/79 (52%)
 Frame = +3

Query: 46  LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
           LF+ G++ +V    +R  F  +G +V   V   ++ GR   FGFV FTS + A  A+ S+
Sbjct: 192 LFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SM 368

Query: 106 DGVRLGGASLSVGLAKPPQ 124
           DG  L G ++ V  A   Q
Sbjct: 369 DGQDLNGRNIRVSYANDRQ 425


>TC79394 weakly similar to PIR|T49019|T49019 probable RNA binding protein -
            Arabidopsis thaliana, partial (74%)
          Length = 1909

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 25/90 (27%), Positives = 48/90 (52%)
 Frame = +2

Query: 33   NQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRF 92
            N + S  S+V  +++V  + E+++ ++++ LF   G++  V +   K    + R+GFV F
Sbjct: 923  NSESSSSSQV-KAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHF 1099

Query: 93   TSWKVAAVAIKSLDGVRLGGASLSVGLAKP 122
                 A  A+K+ +   + G +L   LAKP
Sbjct: 1100 ADRSSAMKALKNTEKYEINGQTLECSLAKP 1189


>TC76334 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein 45
           {Nicotiana plumbaginifolia}, partial (68%)
          Length = 1579

 Score = 44.7 bits (104), Expect = 9e-05
 Identities = 26/87 (29%), Positives = 46/87 (51%)
 Frame = +1

Query: 45  SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
           ++FV  +  +V+   +R +F Q+G LV+V +   K      R GFV+F+    A  AI+ 
Sbjct: 835 TIFVGNLDPNVTDDHLRQVFTQYGELVHVKIPSGK------RCGFVQFSDRSCAEEAIRV 996

Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSD 131
           L+G  LGG ++ +   + P    ++ D
Sbjct: 997 LNGTLLGGQNVRLSWGRTPSNKQTQQD 1077


>BF643563 similar to GP|13877739|gb unknown protein {Arabidopsis thaliana},
           partial (18%)
          Length = 637

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
 Frame = +1

Query: 63  LFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLA-K 121
           LF QFG +V   V + +  G    +GFV++    +A  AI +++G RL G +++V +A K
Sbjct: 187 LFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAVRVAGK 366

Query: 122 PPQKVV 127
           PPQ VV
Sbjct: 367 PPQPVV 384


>TC77695 similar to PIR|T09704|T09704 probable arginine/serine-rich splicing
           factor - alfalfa, partial (83%)
          Length = 1657

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 24/77 (31%), Positives = 41/77 (53%)
 Frame = +1

Query: 45  SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
           SL V  I    +   +  LF ++G++V++F+ R ++ G    F FVR+     A+ A+  
Sbjct: 115 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDR 294

Query: 105 LDGVRLGGASLSVGLAK 121
           LDG  + G  ++V  AK
Sbjct: 295 LDGRMVDGREITVQFAK 345


>AL371197 homologue to GP|6273331|gb| glycine-rich RNA binding protein
           {Medicago sativa}, complete
          Length = 437

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 23/75 (30%), Positives = 42/75 (55%)
 Frame = +1

Query: 47  FVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLD 106
           FV G+A +     +   F+Q+G +V+  +   ++ GR   FGFV F + K    AI++++
Sbjct: 67  FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMN 246

Query: 107 GVRLGGASLSVGLAK 121
           G  L G +++V  A+
Sbjct: 247 GQDLDGRNITVNQAQ 291


>TC76556 similar to PIR|S71779|S71779 glycine-rich RNA-binding protein GRP1
           - wheat, partial (95%)
          Length = 754

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 23/75 (30%), Positives = 42/75 (55%)
 Frame = +2

Query: 47  FVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLD 106
           FV G+A +     +   F+Q+G +V+  +   ++ GR   FGFV F + K    AI++++
Sbjct: 110 FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMN 289

Query: 107 GVRLGGASLSVGLAK 121
           G  L G +++V  A+
Sbjct: 290 GQDLDGRNITVNQAQ 334


>TC79604 similar to GP|18175762|gb|AAL59923.1 unknown protein {Arabidopsis
           thaliana}, partial (56%)
          Length = 727

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 24/78 (30%), Positives = 42/78 (53%)
 Frame = +2

Query: 45  SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
           +LFV G+++  +   +R  F +FG +V+  V   +  G    FGFV++ + + AA  I+ 
Sbjct: 242 NLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIEG 421

Query: 105 LDGVRLGGASLSVGLAKP 122
           +DG  L G  +    A+P
Sbjct: 422 MDGKFLEGWVIFAEYARP 475


>TC77694 homologue to PIR|T09704|T09704 probable arginine/serine-rich
           splicing factor - alfalfa, partial (95%)
          Length = 1494

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 23/77 (29%), Positives = 41/77 (52%)
 Frame = +3

Query: 45  SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
           SL V  I    +   +  LF ++G++V++F+ + ++ G    F FVR+     A+ A+  
Sbjct: 87  SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDR 266

Query: 105 LDGVRLGGASLSVGLAK 121
           LDG  + G  ++V  AK
Sbjct: 267 LDGRMVDGREITVQFAK 317


>TC89748 homologue to PIR|B84565|B84565 probable spliceosome associated
           protein [imported] - Arabidopsis thaliana, partial (56%)
          Length = 707

 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 25/79 (31%), Positives = 41/79 (51%)
 Frame = +2

Query: 47  FVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLD 106
           +V  +   +S   +  LF Q G +VNV+V + +   +   +GFV F S + A  AIK L+
Sbjct: 173 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 352

Query: 107 GVRLGGASLSVGLAKPPQK 125
            ++L G  + V  A   +K
Sbjct: 353 MIKLYGKPIRVNKASQDKK 409


>TC87209 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein 45
           {Nicotiana plumbaginifolia}, partial (69%)
          Length = 1504

 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 24/87 (27%), Positives = 45/87 (51%)
 Frame = +3

Query: 45  SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
           ++FV  +  +V+   ++ +F Q+G LV+V +   K      R GFV+F     A  A++ 
Sbjct: 861 TIFVGNLDPNVTDEHLKQVFTQYGELVHVKIPSGK------RCGFVQFADRSSAEEALRV 1022

Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSD 131
           L+G  LGG ++ +   + P    ++ D
Sbjct: 1023LNGTLLGGQNVRLSWGRSPANKQTQQD 1103



 Score = 30.4 bits (67), Expect = 1.7
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
 Frame = +3

Query: 45  SLFVDGIAESVSYHQIRGLF-AQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIK 103
           ++FV  +A  VS H +  +F  ++  +    V   +  GR   +GFVRF        A+ 
Sbjct: 540 TIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMT 719

Query: 104 SLDGVRLGGASLSVGLAKPPQKVVSRSDAKVAN 136
            + GV      + +G A         S A   N
Sbjct: 720 EMQGVLCSTRPMRIGPASNKNLGTQTSKASYQN 818


>TC89001 similar to GP|5726567|gb|AAD48471.1| glycine-rich RNA-binding
           protein {Glycine max}, partial (90%)
          Length = 488

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 26/90 (28%), Positives = 43/90 (46%)
 Frame = +3

Query: 32  PNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVR 91
           P     G S V    FV G+A +     +   F++FG + +  V   ++ GR   FGFV 
Sbjct: 15  PQFDSMGSSDVEYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVT 194

Query: 92  FTSWKVAAVAIKSLDGVRLGGASLSVGLAK 121
           F   K    AI+ ++G  + G +++V  A+
Sbjct: 195 FAEEKSMRDAIEEMNGQDIDGRNITVNEAQ 284


>TC92312 weakly similar to GP|4567275|gb|AAD23688.1| expressed protein
           {Arabidopsis thaliana}, partial (29%)
          Length = 1319

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 28/90 (31%), Positives = 43/90 (47%)
 Frame = +1

Query: 46  LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
           L V  +      ++IR  F+  G +  VF+ +K   G    F FV+FT  + A  AI+ L
Sbjct: 280 LIVRNLPFKAKENEIRDAFSSAGTVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIRKL 459

Query: 106 DGVRLGGASLSVGLAKPPQKVVSRSDAKVA 135
           +G + G   ++V  A P  K +  SD   A
Sbjct: 460 NGSKFGSRLIAVDWAVP--KKIFSSDTNDA 543


>AL374421 similar to PIR|S59529|S59 RNA-binding glycine-rich protein-1
           (RGP-1c) - wood tobacco, partial (62%)
          Length = 310

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 21/75 (28%), Positives = 40/75 (53%)
 Frame = +2

Query: 47  FVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLD 106
           FV G+A +     +   F+Q+G +++  +   ++ GR   FGFV F   K    AI+ ++
Sbjct: 23  FVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMN 202

Query: 107 GVRLGGASLSVGLAK 121
           G  + G +++V  A+
Sbjct: 203 GQDMDGRNITVNEAQ 247


>TC76948 similar to SP|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A
           chloroplast precursor (CP29A). [Wood tobacco] {Nicotiana
           sylvestris}, partial (61%)
          Length = 1374

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
 Frame = +1

Query: 12  AVGDGVDVGDEAADEEDGS---TPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFG 68
           AV    D  ++  D+ D +   +PNQ+          LFV  +  SV   Q+  +F   G
Sbjct: 265 AVSSEFDQEEDTFDDGDDTPSYSPNQR----------LFVGNLPFSVDSAQLAEIFENAG 414

Query: 69  RLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPP 123
            +  V V   K  GR   FGFV  +S      A + L+G  + G  L V    PP
Sbjct: 415 DVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPP 579



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 24/73 (32%), Positives = 37/73 (49%)
 Frame = +1

Query: 48  VDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLDG 107
           V  +A  V    +  LF + G+++   V   ++ GR   FGFV F+S      AI++LDG
Sbjct: 688 VGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDG 867

Query: 108 VRLGGASLSVGLA 120
             L G ++ V  A
Sbjct: 868 ADLNGRAIRVSPA 906


>CA859237 weakly similar to PIR|T45886|T458 RNA-binding protein cp29 protein
           - Arabidopsis thaliana, partial (20%)
          Length = 298

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 23/71 (32%), Positives = 37/71 (51%)
 Frame = +2

Query: 60  IRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGL 119
           ++G F +FG + +  V R ++ GR   FGFV ++S + A  AI+SL+     G ++ V  
Sbjct: 5   LKGKFEEFGNVEDAVVIRDRETGRSRGFGFVTYSSNEEAEAAIQSLNDQEFDGRTIKVDR 184

Query: 120 AKPPQKVVSRS 130
           A        RS
Sbjct: 185 ASERSTPAPRS 217


>BE124733 similar to PIR|T06796|T06 glycine-rich RNA-binding protein - garden
           pea, partial (86%)
          Length = 580

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 23/62 (37%), Positives = 35/62 (56%)
 Frame = +3

Query: 46  LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
           LF+ G++ +V    +R  F  +G +V   V   ++ GR   FGFV FTS + A  A+ S+
Sbjct: 150 LFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SM 326

Query: 106 DG 107
           DG
Sbjct: 327 DG 332


>TC86510 similar to GP|20160777|dbj|BAB89718. putative ribonucleoprotein
            {Oryza sativa (japonica cultivar-group)}, partial (67%)
          Length = 1587

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 24/73 (32%), Positives = 37/73 (49%)
 Frame = +3

Query: 45   SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
            +LF+  I +     ++   F  FGR+++  V   K  G    FGFV + S + A  AI  
Sbjct: 1197 NLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 1376

Query: 105  LDGVRLGGASLSV 117
            ++G +LGG  L V
Sbjct: 1377 MNGCQLGGKKLKV 1415


>TC90113 similar to PIR|C86301|C86301 arginine/serine-rich protein
           [imported] - Arabidopsis thaliana, partial (70%)
          Length = 1259

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 27/106 (25%), Positives = 53/106 (49%)
 Frame = +1

Query: 30  STPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGF 89
           S P +K S V R  + L V+ ++ +V+   ++ +F+ FG +V+V +   + +     +G+
Sbjct: 223 SPPPRKPSPV-RESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELVMDRAVNLPKGYGY 399

Query: 90  VRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRSDAKVA 135
           V F +   A  A+  +DG ++ G  +      PP++  S     VA
Sbjct: 400 VHFKTRGEAEKALLYMDGAQIDGNVVKARFTLPPRQKASPPPKAVA 537


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,520,059
Number of Sequences: 36976
Number of extensions: 253624
Number of successful extensions: 1294
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of query: 515
length of database: 9,014,727
effective HSP length: 100
effective length of query: 415
effective length of database: 5,317,127
effective search space: 2206607705
effective search space used: 2206607705
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)