BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0249.15
(521 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC78524 similar to PIR|D84561|D84561 probable AAA-type ATPase [i... 362 e-100
TC89129 weakly similar to GP|17385707|dbj|BAB78658. hypothetical... 292 2e-79
TC93594 weakly similar to GP|20466452|gb|AAM20543.1 unknown prot... 244 8e-65
TC87610 similar to GP|9294102|dbj|BAB01954.1 contains similarity... 233 1e-61
TC87252 similar to GP|11559424|dbj|BAB18781. mitochondrial prote... 187 2e-49
TC88541 weakly similar to GP|10176993|dbj|BAB10225. contains sim... 138 6e-33
BG454108 similar to GP|9759050|dbj| AAA-type ATPase-like protein... 135 5e-32
TC85936 homologue to GP|13537115|dbj|BAB40755. AtSUG1 {Arabidops... 71 1e-12
TC77261 homologue to GP|8777330|dbj|BAA96920.1 26S proteasome AA... 68 1e-11
TC76904 homologue to GP|4325041|gb|AAD17230.1| FtsH-like protein... 67 1e-11
TC86159 homologue to GP|21387177|gb|AAM47992.1 26S proteasome AA... 67 2e-11
TC85744 homologue to PIR|T08959|T08959 proteinase homolog F19B15... 65 5e-11
AW684442 similar to GP|9758309|dbj contains similarity to AAA-ty... 65 8e-11
TC85745 homologue to GP|17297987|dbj|BAB78491. 26S proteasome re... 65 8e-11
BF647954 homologue to GP|11094192|db 26S proteasome regulatory p... 64 2e-10
TC84403 homologue to GP|15021761|gb|AAK77908.1 AAA-metalloprotea... 62 5e-10
TC85768 homologue to SP|P54774|CC48_SOYBN Cell division cycle pr... 61 9e-10
TC77012 homologue to SP|P54776|PRSA_LYCES 26S protease regulator... 60 2e-09
TC77340 SP|Q9BAE0|FTSH_MEDSA Cell division protein ftsH homolog ... 59 3e-09
BI271823 similar to GP|21592745|gb cell division protein FtsH-li... 58 8e-09
>TC78524 similar to PIR|D84561|D84561 probable AAA-type ATPase [imported] -
Arabidopsis thaliana, partial (15%)
Length = 1697
Score = 362 bits (928), Expect = e-100
Identities = 189/464 (40%), Positives = 299/464 (63%), Gaps = 9/464 (1%)
Frame = +3
Query: 9 SPSSIFSAYASMTASIMLVRSMANDLIPQPIRGYLTNAIRRLIIKPR-SPTLTLIIEESS 67
S SS F YAS + +ML+R+ NDLIP +R ++ + + R + + ++L I++
Sbjct: 78 SASSWFEVYASFSTFMMLLRTAINDLIPLKLRNFIISKLTRFFTDYQPNNQVSLQIDQFW 257
Query: 68 GIARNQVYDAAEAYLSTRVRPENERLKISKTPKEKKLTIRLEKDEKVEDIYNGASLIWKF 127
+ N +Y AA+ Y+ T++ + LK+ K K + + + + VED ++ L W+
Sbjct: 258 DGSTNHLYYAAKEYIPTKISNTYKSLKVGKISKHNNMVLAFDGKQVVEDEFDDIKLKWRL 437
Query: 128 ICAETEKNSTLSNNHDIHNNSVSLRS---EKRYFELSFLKEHKEMVLECYLPFILDRAKE 184
+ E N +N RS ++ F LSF ++H++ V+E Y+P +L +
Sbjct: 438 V--ENSNNGDGFDNPKKEYKEYKHRSKDYDENGFVLSFDEKHRDKVMEKYIPHVLSTYEA 611
Query: 185 MKDEDRVLKIHTLNASYCYNVIKWDSINLEHPSTFETLAMEPEAKKAVMEDLNRFVKRKE 244
+K ++ LKIH++ + W +L HP++F++LAM+P+ K ++++DL+RF++RK+
Sbjct: 612 IKAGNKTLKIHSMQSG------PWKQSDLTHPASFDSLAMDPDLKNSIIDDLDRFLRRKK 773
Query: 245 FYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVRDSDLRKLLLATA 304
YKKVG+ WKRGYLLYGPPGTGKSSLIAAMA YLKFD++DL L ++ +S+L + + T+
Sbjct: 774 LYKKVGKPWKRGYLLYGPPGTGKSSLIAAMAKYLKFDVYDLDLSSVFSNSELMRAMRETS 953
Query: 305 NRSILVIEDIDCSVDLTERRNGG-----DGQTDVQAHRESDGWMQLTLSGLLNFIDGLWS 359
NRSI+V EDIDC+ ++ +R D ++ + + TLSGLLN++DGLWS
Sbjct: 954 NRSIIVFEDIDCNSEVLDRAKPDKFPDMDFLDGIKMGKNMPP-RKFTLSGLLNYMDGLWS 1130
Query: 360 SCGDERIIVFTTNHKERLDPALLRPGRMDVHIHMSYCSYQGFKLLASNYLSNISPDHQSL 419
SCG+ERI++FTTNHK+++DPALLRPGRMD+HIH+S+ + F++LA+NYL +I +H SL
Sbjct: 1131SCGEERILIFTTNHKDKVDPALLRPGRMDMHIHLSFLKAKAFRILAANYL-DIEGNHHSL 1307
Query: 420 FGEIEGLIEDIQITPAQVAEELMKSEDADATLEGFVKLLKRKKM 463
F +IE L+E + ++PA VAE L++SED D L VK L+ +++
Sbjct: 1308FEQIEELLEKVDVSPAVVAEYLLRSEDPDVALGALVKFLQDQEI 1439
>TC89129 weakly similar to GP|17385707|dbj|BAB78658. hypothetical
protein~similar to Arabidopsis thaliana F18B3.210,
partial (7%)
Length = 652
Score = 292 bits (747), Expect = 2e-79
Identities = 153/197 (77%), Positives = 173/197 (87%)
Frame = +1
Query: 1 MFSPREMPSPSSIFSAYASMTASIMLVRSMANDLIPQPIRGYLTNAIRRLIIKPRSPTLT 60
MFS REMPSPS+IFSAYASMTASIML+RSMA +LIPQPIRGYL N R LI KPRSPTLT
Sbjct: 70 MFSQREMPSPSTIFSAYASMTASIMLLRSMAQELIPQPIRGYLYNTFRYLI-KPRSPTLT 246
Query: 61 LIIEESSGIARNQVYDAAEAYLSTRVRPENERLKISKTPKEKKLTIRLEKDEKVEDIYNG 120
LIIEES+GI RNQVYDAAE+YLST+V PENERLKISK PKEKKLTIRLEK EK+ DIYNG
Sbjct: 247 LIIEESTGITRNQVYDAAESYLSTKVTPENERLKISKVPKEKKLTIRLEKGEKLTDIYNG 426
Query: 121 ASLIWKFICAETEKNSTLSNNHDIHNNSVSLRSEKRYFELSFLKEHKEMVLECYLPFILD 180
L W+FICAETEKNS +N+ +NNSVS+RSEK+YFELSF K++KE+ L+ YLPFILD
Sbjct: 427 FPLKWRFICAETEKNS--ANDMHNNNNSVSVRSEKKYFELSFHKKYKEVGLDSYLPFILD 600
Query: 181 RAKEMKDEDRVLKIHTL 197
+A+EMKDE RVLK+HTL
Sbjct: 601 KAQEMKDEXRVLKMHTL 651
>TC93594 weakly similar to GP|20466452|gb|AAM20543.1 unknown protein
{Arabidopsis thaliana}, partial (40%)
Length = 754
Score = 244 bits (622), Expect = 8e-65
Identities = 127/254 (50%), Positives = 175/254 (68%), Gaps = 24/254 (9%)
Frame = +1
Query: 223 AMEPEAKKAVMEDLNRFVKRKEFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDI 282
AM P+ KK +++DL F K KE+Y K+G+ WKRGYLLYGPPGTGKSSL+AA+AN+LK+DI
Sbjct: 1 AMSPKKKKEIVDDLVTFSKAKEYYAKIGKPWKRGYLLYGPPGTGKSSLVAAIANFLKYDI 180
Query: 283 FDLQLGNIVRDSDLRKLLLATANRSILVIEDIDCSVDLTERRNGGDGQTDVQ-------- 334
+D++L N+ +++LRKLL+ ++S++VIEDIDCS+DLT +R D + D +
Sbjct: 181 YDIELTNVKNNAELRKLLIGITSKSVVVIEDIDCSLDLTGQRK-TDSENDKEKEEKNEEV 357
Query: 335 -------------AHRESDGWMQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPAL 381
A +E + Q+TLSGLLNFIDG+WS+ ER+I+FTTN+ E+LD AL
Sbjct: 358 NQVAAASLQGLQAADKEKNKASQVTLSGLLNFIDGIWSASTGERLIIFTTNYVEKLDQAL 537
Query: 382 LRPGRMDVHIHMSYCSYQGFKLLASNYLSNISPDHQSLFGEIEGLIEDIQITPAQVAEEL 441
+R GRMD+HI +SY + GFK+LA NYL S + LF I+ L+E+ +TPA VAE L
Sbjct: 538 IRRGRMDMHIELSYWGFDGFKMLAMNYL---SIESHPLFETIQRLLEETNMTPADVAENL 708
Query: 442 M---KSEDADATLE 452
M ED +A+LE
Sbjct: 709 MPKVAEEDVEASLE 750
>TC87610 similar to GP|9294102|dbj|BAB01954.1 contains similarity to AAA-type
ATPase~gene_id:T20D4.3 {Arabidopsis thaliana}, partial
(53%)
Length = 1765
Score = 233 bits (595), Expect = 1e-61
Identities = 128/287 (44%), Positives = 184/287 (63%), Gaps = 23/287 (8%)
Frame = +3
Query: 241 KRKEFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVRDSDLRKLL 300
K K K+ +AWKRGYLL+GPPGTGKS++I+A+AN++ +D++DL+L + +++L++LL
Sbjct: 756 KGKSIMLKLEKAWKRGYLLFGPPGTGKSTMISAIANFMNYDVYDLELTIVKDNNELKRLL 935
Query: 301 LATANRSILVIEDIDCSVDLTERRNGGDGQTDVQ----------AHRESDGWMQLTLSGL 350
+ T+++SI+VIEDIDCS+DLT +R + DV+ A +E ++TLSGL
Sbjct: 936 IETSSKSIIVIEDIDCSLDLTGQRKKKKEKDDVENDEKKDPIKKAEKEEKNESKVTLSGL 1115
Query: 351 LNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDVHIHMSYCSYQGFKLLASNYLS 410
LNFIDG+WS+CG ERII+FTTN ++LDPAL+R GRMD HI MSYCSYQ FK+LA NYL
Sbjct: 1116 LNFIDGIWSACGSERIIIFTTNFVDKLDPALIRRGRMDKHIEMSYCSYQAFKVLARNYLD 1295
Query: 411 NISPDHQSLFGEIEGLIEDIQITPAQVAEELMK---SEDADATLEGFVKLLK-------- 459
H LF IE L+ + +TPA VAE LM +ED ++ L+ ++ L+
Sbjct: 1296 --VETHDDLFPIIEKLLGETNMTPADVAENLMPKSITEDFESCLKNLIQSLEIAKKKDEE 1469
Query: 460 --RKKMEGDVCENFSAPDKAEEPSKRRKVAAGCKKKRGGGGVGINEN 504
+KK+E + + +K E + KV A K + G+ EN
Sbjct: 1470 EAKKKIEDQEAKLKAQKEKQELTQEEEKVKADEKLEEKVKENGVKEN 1610
Score = 119 bits (299), Expect = 2e-27
Identities = 74/246 (30%), Positives = 125/246 (50%), Gaps = 6/246 (2%)
Frame = +2
Query: 13 IFSAYASMTASIMLVRSMANDLIPQPIRGYLTNAIRRLIIKPRSPTLTLIIEESSG--IA 70
I+S S+ ASIM V +M P +R YL + P + + E SG +
Sbjct: 83 IWSNLGSIMASIMFVYAMYEKFFPPALRRYLRKYTHKFT-NFMYPYIKITFYEKSGDNLK 259
Query: 71 RNQVYDAAEAYLSTRVRPENERLKISKTP-KEKKLTIRLEKDEKVEDIYNGASLIWKFIC 129
N+ Y + YLS RLK + L + ++ ++++ D +NG + W
Sbjct: 260 HNKTYTTIQTYLSANSSQRARRLKAEVIKDSQNPLVLSMDDNQEITDEFNGVKVWWS--- 430
Query: 130 AETEKNSTLSNNHDIHNNSVSLRSEKRYFELSFLKEHKEMVLECYLPFILDRAKEMKDED 189
++ + + I+ +S EKR+ L+F K H+E++ Y+ +L++ K + ++
Sbjct: 431 --ANHITSRTQSFSIYPSS----DEKRFLTLTFHKRHRELITTSYIQHVLEQGKAITMKN 592
Query: 190 RVLKIHTLNAS---YCYNVIKWDSINLEHPSTFETLAMEPEAKKAVMEDLNRFVKRKEFY 246
R LKI+T N S + Y KW EHP++FETLA+EP+ K+ ++ DL +F K KE+Y
Sbjct: 593 RQLKIYTNNPSNDWFRYRSTKWSHTTFEHPASFETLALEPKKKEEILNDLVKFKKGKEYY 772
Query: 247 KKVGRA 252
KVG++
Sbjct: 773 AKVGKS 790
>TC87252 similar to GP|11559424|dbj|BAB18781. mitochondrial protein-like
protein {Cucumis sativus}, partial (72%)
Length = 968
Score = 187 bits (476), Expect(2) = 2e-49
Identities = 105/297 (35%), Positives = 167/297 (55%), Gaps = 6/297 (2%)
Frame = +2
Query: 13 IFSAYASMTASIMLVRSMANDLIPQPIRGYLTNAIRRLIIKPRSPTLTLIIEESSG--IA 70
++S S+ ASIM V +M + P +R Y + P + + E SG +
Sbjct: 65 LWSQLGSIMASIMFVYAMFDKFFPPNLRVYFLKYTNKFT-NYMYPYIHIKFHELSGERLK 241
Query: 71 RNQVYDAAEAYLSTRVRPENERLKISKTP-KEKKLTIRLEKDEKVEDIYNGASLIWKFIC 129
+++ Y + YLS RLK + L + ++ +E++ D +NG + W
Sbjct: 242 QSETYKIIQTYLSDNSSQRARRLKAEVVKDSQNPLVLSMDDNEEIIDEFNGVKVWWT--- 412
Query: 130 AETEKNSTLSNNHDIHNNSVSLRSEKRYFELSFLKEHKEMVLECYLPFILDRAKEMKDED 189
N T S + S EKR+ L+F K+H+E++ Y+ +LD K + ++
Sbjct: 413 ----ANYTTSKSQSFSYYPTS--DEKRFLTLTFHKKHREVITTSYIQHVLDEGKSIMSKN 574
Query: 190 RVLKIHTLNAS---YCYNVIKWDSINLEHPSTFETLAMEPEAKKAVMEDLNRFVKRKEFY 246
R LK++T N S + Y KW+ EHP+ F TLAMEPE K+ ++ DL +F K KE+Y
Sbjct: 575 RQLKLYTNNPSSNWWGYRSKKWNHTTFEHPARFGTLAMEPEKKQEILNDLLKFKKGKEYY 754
Query: 247 KKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVRDSDLRKLLLAT 303
KVG+AWKRGYLLYGPPGTGKS++I+A+ANY+ +D++DL+L + +++L++LL+ T
Sbjct: 755 AKVGKAWKRGYLLYGPPGTGKSTMISAIANYMNYDVYDLELTTVKDNNELKRLLIET 925
Score = 26.9 bits (58), Expect(2) = 2e-49
Identities = 11/17 (64%), Positives = 15/17 (87%)
Frame = +3
Query: 301 LATANRSILVIEDIDCS 317
L +++SI+VIEDIDCS
Sbjct: 918 LKRSSKSIIVIEDIDCS 968
>TC88541 weakly similar to GP|10176993|dbj|BAB10225. contains similarity to
AAA-type ATPase~gene_id:MYH19.21 {Arabidopsis thaliana},
partial (26%)
Length = 854
Score = 138 bits (347), Expect = 6e-33
Identities = 80/251 (31%), Positives = 140/251 (54%), Gaps = 2/251 (0%)
Frame = +1
Query: 11 SSIFSAYASMTASIMLVRSMANDLIPQPIRGYLTNAIRRLIIKPRSPTLTLIIEESSG-- 68
+ +F+ S+ AS+M + ++ P +R + +RL+ P + + E +G
Sbjct: 148 TEMFAQIGSIIASLMFIWAIFQQYFPYQLRNLIDKYSQRLVTFIY-PYIQITFHEFTGER 324
Query: 69 IARNQVYDAAEAYLSTRVRPENERLKISKTPKEKKLTIRLEKDEKVEDIYNGASLIWKFI 128
+ R++ Y + E YLS++ + +RLK + L + ++ E++ D +NG L W
Sbjct: 325 LMRSEAYSSIENYLSSKASTQAKRLKGDIAKNNQSLILSMDDKEEICDEFNGMKLWWA-- 498
Query: 129 CAETEKNSTLSNNHDIHNNSVSLRSEKRYFELSFLKEHKEMVLECYLPFILDRAKEMKDE 188
+ K ++ SN+ +H N EKRY++L+F K +++++L YL +L K ++ +
Sbjct: 499 ---SGKKASNSNSISLHQNI----DEKRYYKLTFHKHNRDVILGKYLSHVLKEGKAIQVK 657
Query: 189 DRVLKIHTLNASYCYNVIKWDSINLEHPSTFETLAMEPEAKKAVMEDLNRFVKRKEFYKK 248
+R K++T + S+ W + EHPSTFETLAM+ E K+ +++DL F K EFY +
Sbjct: 658 NRQRKLYTNSGSH------WSHVVFEHPSTFETLAMDLEKKEMIIDDLITFSKAGEFYAR 819
Query: 249 VGRAWKRGYLL 259
+GRAWKRGYLL
Sbjct: 820 IGRAWKRGYLL 852
>BG454108 similar to GP|9759050|dbj| AAA-type ATPase-like protein
{Arabidopsis thaliana}, partial (8%)
Length = 519
Score = 135 bits (339), Expect = 5e-32
Identities = 82/118 (69%), Positives = 92/118 (77%), Gaps = 3/118 (2%)
Frame = +1
Query: 407 NYLSNISPDHQSLFGEIEGLIEDIQITPAQVAEELMKSEDADATLEGFVKLLKRKKMEGD 466
NYL +IS D+ FGEIEGLIEDIQITPAQVAEELMK+EDA+ATLEGFVKLLKRKKMEGD
Sbjct: 1 NYL-DISHDNP-FFGEIEGLIEDIQITPAQVAEELMKNEDAEATLEGFVKLLKRKKMEGD 174
Query: 467 VCENFSAPDKAEEPSKRRKVAAGCKKKRGGGGVGINENNGTVAVTQRRTR---RGCSL 521
VCEN + +K E+ SK+RKV GCK+KRGGG + V VTQRRTR RG SL
Sbjct: 175 VCENNN--NKIEQQSKKRKV-VGCKQKRGGG-----NSKSNVVVTQRRTRGYKRGSSL 324
>TC85936 homologue to GP|13537115|dbj|BAB40755. AtSUG1 {Arabidopsis
thaliana}, partial (98%)
Length = 1633
Score = 70.9 bits (172), Expect = 1e-12
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 8/180 (4%)
Frame = +1
Query: 217 STFETLAMEPEAKKAVMEDLNRFVKRKEFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMAN 276
ST++ + + K + E + +K E ++ +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 613 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 792
Query: 277 -----YLKFDIFDLQLGNIVRDSDLRKLLLATANR---SILVIEDIDCSVDLTERRNGGD 328
+++ +L I S + + L A SI+ +++ID G+
Sbjct: 793 HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGN 972
Query: 329 GQTDVQAHRESDGWMQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMD 388
G ++VQ T+ LLN +DG +S ++ ++ TN + LD ALLRPGR+D
Sbjct: 973 GDSEVQR----------TMLELLNQLDGFEAS--NKIKVLMATNRIDILDQALLRPGRID 1116
>TC77261 homologue to GP|8777330|dbj|BAA96920.1 26S proteasome AAA-ATPase
subunit RPT3 {Arabidopsis thaliana}, partial (94%)
Length = 1575
Score = 67.8 bits (164), Expect = 1e-11
Identities = 73/285 (25%), Positives = 120/285 (41%), Gaps = 47/285 (16%)
Frame = +2
Query: 151 LRSEKRYFELSFLKEHKEMVLECYLPFILDRAKEMKDEDRVLKIHTLNASYCYNVIKWDS 210
++ E++ + L+ +E+ +P ++ + EM D + + T ++Y ++ +
Sbjct: 263 VKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDTNNGIVGSTTGSNYYVRILSTIN 442
Query: 211 INLEHPSTFETL---------AMEPEA--------------------------KKAVMED 235
L PS L + PEA K+ + E
Sbjct: 443 RELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREA 622
Query: 236 LNRFVKRKEFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANY--------LKFDIFDLQL 287
+ + E YK++G RG LLYGPPGTGK+ L A+AN+ + + L
Sbjct: 623 VELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL 802
Query: 288 G---NIVRDSDLRKLLLATANR-SILVIEDIDCSVDLTERRNGGDGQTDVQAHRESDGWM 343
G +VRD LA N +I+ I+++D T R + G +D +
Sbjct: 803 GEGPRMVRD----VFRLAKENAPAIIFIDEVDAIA--TARFDAQTG---------ADREV 937
Query: 344 QLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMD 388
Q L LLN +DG + + ++ TN + LDPALLRPGR+D
Sbjct: 938 QRILMELLNQMDGFDQTVNVK--VIMATNRADTLDPALLRPGRLD 1066
>TC76904 homologue to GP|4325041|gb|AAD17230.1| FtsH-like protein Pftf
precursor {Nicotiana tabacum}, partial (91%)
Length = 2667
Score = 67.4 bits (163), Expect = 1e-11
Identities = 63/195 (32%), Positives = 87/195 (44%), Gaps = 12/195 (6%)
Frame = +1
Query: 218 TFETLAMEPEAKKAVMEDLNRFVKRKEFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANY 277
TF+ +A EAK+ ME + F+K+ E + VG +G LL GPPGTGK+ L A+A
Sbjct: 823 TFDDVAGVDEAKQDFMEVVE-FLKKPERFTSVGARIPKGVLLVGPPGTGKTLLAKAIAGE 999
Query: 278 LKFDIFDLQLGNIV---------RDSDLRKLLLATANRSILVIEDIDCSVDLTERRNG-- 326
F + V R DL K A N +V D +D R+ G
Sbjct: 1000AGVPFFSISGSEFVEMFVGIGASRVRDLFK--KAKENAPCIVFVD---EIDAVGRQRGTG 1164
Query: 327 -GDGQTDVQAHRESDGWMQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPG 385
G G + + TL+ LL +DG + G I+V TN + LD ALLRPG
Sbjct: 1165IGGGNDE----------REQTLNQLLTEMDGFEGNTG--VIVVAATNRADILDSALLRPG 1308
Query: 386 RMDVHIHMSYCSYQG 400
R D + + +G
Sbjct: 1309RFDRQVSVDVPDVRG 1353
>TC86159 homologue to GP|21387177|gb|AAM47992.1 26S proteasome AAA-ATPase
subunit RPT4a-like protein {Arabidopsis thaliana},
complete
Length = 1640
Score = 67.0 bits (162), Expect = 2e-11
Identities = 75/286 (26%), Positives = 132/286 (45%), Gaps = 18/286 (6%)
Frame = +2
Query: 203 YNVIKWDSINLEHPSTFETLAMEPEAKKAVMEDLNRFVKRKEFYKKVGRAWKRGYLLYGP 262
YN++ D N+ ++ + + + + E + + E + +VG +G LLYGP
Sbjct: 446 YNMLHEDPGNI----SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGP 613
Query: 263 PGTGKSSLIAAM-----ANYLKF---DIFDLQLGNIVRDSDLRKLL-LATANRSILVIED 313
PGTGK+ L A+ AN+LK I D +G R +R++ A ++ ++ D
Sbjct: 614 PGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESAR--LIREMFGYARDHQPCIIFMD 787
Query: 314 IDCSVDLTERRNGGDGQTDVQAHRESDGWMQLTLSGLLNFIDGLWSSCGDERIIVFTTNH 373
+D R +G + +D +Q TL LLN +DG + G ++I+ TN
Sbjct: 788 ---EIDAIGGRRFSEGTS-------ADREIQRTLMELLNQLDG-FDQLGKVKMIM-ATNR 931
Query: 374 KERLDPALLRPGRMDVHIHMSYCSYQG----FKLLASNYLSNISPDHQSLFGEIEGLI-E 428
+ LDPALLRPGR+D I + + Q K+ A+ + D++++ EG
Sbjct: 932 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGA 1111
Query: 429 DIQITPAQVAEELMKSEDADATLEGFVKLLKR----KKMEGDVCEN 470
D++ + +++E E F+K +++ KK+E N
Sbjct: 1112DLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYN 1249
>TC85744 homologue to PIR|T08959|T08959 proteinase homolog F19B15.70 -
Arabidopsis thaliana, complete
Length = 1629
Score = 65.5 bits (158), Expect = 5e-11
Identities = 50/147 (34%), Positives = 75/147 (51%), Gaps = 2/147 (1%)
Frame = +2
Query: 244 EFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVRD--SDLRKLLL 301
E Y+ +G +G +LYG PGTGK+ L A+AN + +++ D KL+
Sbjct: 725 ELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLV- 901
Query: 302 ATANRSILVIEDIDCSVDLTERRNGGDGQTDVQAHRESDGWMQLTLSGLLNFIDGLWSSC 361
V +D+ S+ + + G AH + +Q T+ LLN +DG + S
Sbjct: 902 ---RELFRVADDLSPSIVFIDEID-AVGTKRYDAHSGGEREIQRTMLELLNQLDG-FDSR 1066
Query: 362 GDERIIVFTTNHKERLDPALLRPGRMD 388
GD ++I+ TN E LDPALLRPGR+D
Sbjct: 1067GDVKVIL-ATNRIESLDPALLRPGRID 1144
>AW684442 similar to GP|9758309|dbj contains similarity to AAA-type
ATPase~gene_id:MUA2.5 {Arabidopsis thaliana}, partial
(33%)
Length = 600
Score = 64.7 bits (156), Expect = 8e-11
Identities = 36/131 (27%), Positives = 70/131 (52%), Gaps = 2/131 (1%)
Frame = +2
Query: 63 IEESSGIARNQVYDAAEAYLSTRVRPENERLKISKTPKEKKLTIRLEKDEKVEDIYNGAS 122
I E G+ N++Y+A + YLS+ V RL +++ T L ++ + D +NG +
Sbjct: 233 ITEIDGVNTNELYNAVQLYLSSSVSITGNRLSLTRAVNSSAFTFGLANNDSIIDTFNGVN 412
Query: 123 LIWKFICAETEKNSTLSNNHDIHNNSVSLRSEKRYFELSFLKEHKEMVLECYLPFILDRA 182
++W+ + T++NS + L EKR F L K+ K+++ YL +I+++A
Sbjct: 413 VVWEHVV--TQRNSQTFSWR-------PLPDEKRGFTLRIKKKDKQLLXNSYLDYIMEKA 565
Query: 183 KEM--KDEDRV 191
++ K++DR+
Sbjct: 566 SDIRRKNQDRL 598
>TC85745 homologue to GP|17297987|dbj|BAB78491. 26S proteasome regulatory
particle triple-A ATPase subunit2b {Oryza sativa
(japonica cultivar-group), partial (98%)
Length = 1696
Score = 64.7 bits (156), Expect = 8e-11
Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 8/153 (5%)
Frame = +3
Query: 244 EFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVR------DSDLR 297
E Y+ +G +G +LYG PGTGK+ L A+AN + +++ +R
Sbjct: 723 ELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVR 902
Query: 298 KLLLATANRS--ILVIEDIDCSVDLTERRNGGDGQTDVQAHRESDGWMQLTLSGLLNFID 355
+L + S I+ I++ID G AH + +Q T+ LLN +D
Sbjct: 903 ELFRVADDLSPAIVFIDEIDAV-----------GTKRYDAHSGGEREIQRTMLELLNQLD 1049
Query: 356 GLWSSCGDERIIVFTTNHKERLDPALLRPGRMD 388
G + S GD ++I+ TN E LDPALLRPGR+D
Sbjct: 1050G-FDSRGDVKVIL-ATNRIESLDPALLRPGRID 1142
>BF647954 homologue to GP|11094192|db 26S proteasome regulatory particle
triple-A ATPase subunit4 {Oryza sativa (japonica
cultivar-group)}, partial (53%)
Length = 649
Score = 63.5 bits (153), Expect = 2e-10
Identities = 62/195 (31%), Positives = 96/195 (48%), Gaps = 13/195 (6%)
Frame = +2
Query: 244 EFYKKVGRAWKRGYLLYGPPGTGKSSLIAAM-----ANYLKF---DIFDLQLGNIVRDSD 295
E + +VG +G LLYGPPGTGK+ L A+ AN+LK I D +G R
Sbjct: 11 ELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESSR--L 184
Query: 296 LRKLL-LATANRSILVIEDIDCSVDLTERRNGGDGQTDVQAHRESDGWMQLTLSGLLNFI 354
+R++ A ++ ++ D +D R +G + +D +Q TL LLN +
Sbjct: 185 IREMFGYARDHQPCIIFMD---EIDAIGGRRFSEGTS-------ADREIQRTLMELLNQL 334
Query: 355 DGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDVHIHMSYCSYQG----FKLLASNYLS 410
DG + G +II+ TN + LDPALLRPGR+D I + + Q K+ A+
Sbjct: 335 DG-FDQLGKVKIIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAK 508
Query: 411 NISPDHQSLFGEIEG 425
+ D++++ EG
Sbjct: 509 HGEIDYEAVVKLAEG 553
>TC84403 homologue to GP|15021761|gb|AAK77908.1 AAA-metalloprotease FtsH
{Pisum sativum}, partial (36%)
Length = 897
Score = 62.0 bits (149), Expect = 5e-10
Identities = 59/173 (34%), Positives = 82/173 (47%), Gaps = 10/173 (5%)
Frame = +3
Query: 255 RGYLLYGPPGTGKSSLIAAMAN-----YLKF---DIFDLQLGNIVRDSDLRKLLLATAN- 305
+G LL GPPGTGK+ L A A +L D +L +G V S +R L
Sbjct: 18 KGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFLELFVG--VGSSRVRNLFKEARKC 191
Query: 306 -RSILVIEDIDCSVDLTERRNGGDGQTDVQAHRESDGWMQLTLSGLLNFIDGLWSSCGDE 364
SI+ I++ID ++ GGD D RES TL+ LL +DG ++ G
Sbjct: 192 APSIVFIDEID-AIGRARGSRGGDRAND---ERES------TLNQLLVEMDGFGTTAGV- 338
Query: 365 RIIVFTTNHKERLDPALLRPGRMDVHIHMSYCSYQGFKLLASNYLSNISPDHQ 417
+++ TN + LD ALLRPGR D I + +G + YL I DH+
Sbjct: 339 -VVLAGTNRPDVLDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKGIKLDHE 494
>TC85768 homologue to SP|P54774|CC48_SOYBN Cell division cycle protein 48
homolog (Valosin containing protein homolog) (VCP).
[Soybean], partial (95%)
Length = 2785
Score = 61.2 bits (147), Expect = 9e-10
Identities = 57/242 (23%), Positives = 104/242 (42%), Gaps = 20/242 (8%)
Frame = +2
Query: 172 ECYLPFILDRAKEMKDEDRVLKIHTLNASYCYNVIKWDSINLEHPSTFETLAME------ 225
E L I ++ + ED + LN+ N ++ +PS +E
Sbjct: 1355 EAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFATALGSSNPSALRETVVEVPNCSW 1534
Query: 226 ------PEAKKAVMEDLNRFVKRKEFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLK 279
K+ + E + V+ E ++K G + +G L YGPPG GK+ L A+AN +
Sbjct: 1535 DDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 1714
Query: 280 FDIFDLQLGNIV------RDSDLRKLLLATANRS--ILVIEDIDCSVDLTERRNGGDGQT 331
+ ++ ++ ++++R++ + +L +++D + +R G
Sbjct: 1715 ANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELD---SIATQRGSSVGDA 1885
Query: 332 DVQAHRESDGWMQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDVHI 391
A R L+ LL +DG+ S I+ TN + +DPALLRPGR+D I
Sbjct: 1886 GGAADR--------VLNQLLTEMDGM--SAKKTVFIIGATNRPDIIDPALLRPGRLDQLI 2035
Query: 392 HM 393
++
Sbjct: 2036 YI 2041
Score = 55.8 bits (133), Expect = 4e-08
Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 8/160 (5%)
Frame = +2
Query: 240 VKRKEFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIV------RD 293
++ + +K +G +G LLYGPPG+GK+ + A+AN F + I+ +
Sbjct: 776 LRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESE 955
Query: 294 SDLRKLLLATANR--SILVIEDIDCSVDLTERRNGGDGQTDVQAHRESDGWMQLTLSGLL 351
S+LRK SI+ I++ID E+ +G +V+ + +S LL
Sbjct: 956 SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG-----EVE---------RRIVSQLL 1093
Query: 352 NFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDVHI 391
+DGL S I++ TN +DPAL R GR D I
Sbjct: 1094TLMDGLKSRA--HVIVMGATNRPNSIDPALRRFGRFDREI 1207
>TC77012 homologue to SP|P54776|PRSA_LYCES 26S protease regulatory subunit
6A homolog (TAT-binding protein homolog 1) (TBP-1)
(Mg(2+), complete
Length = 1793
Score = 60.5 bits (145), Expect = 2e-09
Identities = 53/165 (32%), Positives = 81/165 (48%), Gaps = 12/165 (7%)
Frame = +1
Query: 243 KEFYKKVGRAWKRGYLLYGPPGTGKSSLIAAM-----ANYLKF---DIFDLQLGN---IV 291
KE ++K+G +G LLYGPPGTGK+ + A A +LK + + +G+ +V
Sbjct: 709 KERFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLV 888
Query: 292 RDSDLRKLLLATANRSILVIEDIDCSVDLTERRNGGDGQTDVQAHRESDGWMQLTLSGLL 351
RD+ L + I+ I++ID G + D +Q T+ LL
Sbjct: 889 RDA---FQLAKEKSPCIIFIDEIDAI-----------GTKRFDSEVSGDREVQRTMLELL 1026
Query: 352 NFIDGLWSSCGDERI-IVFTTNHKERLDPALLRPGRMDVHIHMSY 395
N +DG S D+RI ++ TN + LDPAL+R GR+D I +
Sbjct: 1027NQLDGFSS---DDRIKVIAATNRADILDPALMRSGRLDRKIEFPH 1152
>TC77340 SP|Q9BAE0|FTSH_MEDSA Cell division protein ftsH homolog chloroplast
precursor (EC 3.4.24.-). [Alfalfa] {Medicago sativa},
complete
Length = 2473
Score = 59.3 bits (142), Expect = 3e-09
Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 8/179 (4%)
Frame = +3
Query: 218 TFETLAMEPEAKKAVMEDLNRFVKRKEFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANY 277
TF +A +AK + E ++ F+K + Y +G +G LL GPPGTGK+ L A+A
Sbjct: 1002 TFADVAGADQAKLELQEVVD-FLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGE 1178
Query: 278 LKFDIFDLQLGNIVR------DSDLRKLLLATANRS--ILVIEDIDCSVDLTERRNGGDG 329
F V S +R L +++ I+ I++ID + +R G G
Sbjct: 1179 AGTPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDA---VGRQRGAGLG 1349
Query: 330 QTDVQAHRESDGWMQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMD 388
+ + + T++ LL +DG + G I++ TN + LD ALLRPGR D
Sbjct: 1350 GGNDEREQ--------TINQLLTEMDGFSGNSG--VIVLAATNRPDVLDSALLRPGRFD 1496
>BI271823 similar to GP|21592745|gb cell division protein FtsH-like protein
{Arabidopsis thaliana}, partial (33%)
Length = 714
Score = 58.2 bits (139), Expect = 8e-09
Identities = 49/163 (30%), Positives = 71/163 (43%), Gaps = 8/163 (4%)
Frame = +3
Query: 246 YKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIV-----RDSDLRKLL 300
Y+K+G RG LL GPPGTGK+ L A+A F + V R + + L
Sbjct: 174 YQKLGAKLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFTVSASEFVEMFVGRGAARIRDL 353
Query: 301 LATANR---SILVIEDIDCSVDLTERRNGGDGQTDVQAHRESDGWMQLTLSGLLNFIDGL 357
+ A + SI+ I+++D GG R+ TL+ LL +DG
Sbjct: 354 FSRARKFAPSIIFIDELDAV--------GGKRGRGFNEERDQ------TLNQLLTEMDGF 491
Query: 358 WSSCGDERIIVFTTNHKERLDPALLRPGRMDVHIHMSYCSYQG 400
S +++ TN E LDPAL RPGR + + +G
Sbjct: 492 ESEI--RVVVIAATNRPEALDPALCRPGRFSXKVFVGEPDEEG 614
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.135 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,752,202
Number of Sequences: 36976
Number of extensions: 194587
Number of successful extensions: 1277
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of query: 521
length of database: 9,014,727
effective HSP length: 100
effective length of query: 421
effective length of database: 5,317,127
effective search space: 2238510467
effective search space used: 2238510467
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0249.15