BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0248.1
(119 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarot... 43 2e-05
BQ148771 41 8e-05
BE998314 28 0.51
TC86872 similar to GP|13898893|gb|AAK48904.1 Golgi SNARE 11 prot... 28 0.66
TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non... 27 1.5
TC78989 similar to PIR|T02607|T02607 probable cytochrome P450 T1... 26 2.5
BQ149667 homologue to GP|10638981|em protein phosphatase {Fagus ... 26 2.5
TC82948 26 2.5
TC90119 similar to GP|10172593|dbj|BAB01397. protein kinase-like... 26 2.5
TC90775 similar to GP|15795142|dbj|BAB03130. gb|AAF48080.1~gene_... 26 2.5
AW774547 similar to GP|17221128|gb| glycoprotein gp2 {Equine her... 26 2.5
BI270342 similar to GP|1209631|gb| GNOM gene product {Arabidopsi... 25 3.3
TC87388 similar to GP|12322847|gb|AAG51409.1 unknown protein; 15... 25 3.3
BG451247 similar to GP|6730969|dbj beta-amyrin synthase {Glycyrr... 25 3.3
BQ124806 similar to SP|P42762|ERD1 ERD1 protein chloroplast pre... 25 4.3
BG580539 25 4.3
TC77067 weakly similar to PIR|C96759|C96759 protein serine carbo... 25 4.3
AL386717 similar to GP|6730969|dbj beta-amyrin synthase {Glycyrr... 25 5.6
TC87389 similar to GP|12322847|gb|AAG51409.1 unknown protein; 15... 25 5.6
TC77297 homologue to PIR|T05726|T05726 GH1 protein - soybean (fr... 25 5.6
>TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarotenoid
dioxygenase1 {Pisum sativum}, partial (43%)
Length = 1865
Score = 42.7 bits (99), Expect = 2e-05
Identities = 24/74 (32%), Positives = 41/74 (54%), Gaps = 3/74 (4%)
Frame = -3
Query: 36 QTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLSQKY-- 93
Q + W+ +P C+ GGLG+R L N+++L K LL+D+ LW VL Y
Sbjct: 987 QFYIWHCLPRCK-------GGLGVRDIRLVNVSLLAKWWWRLLQDQSSLWKEVLEDIYGP 829
Query: 94 -LSNKSVLAGKYKR 106
+S+++++ G+ R
Sbjct: 828 RVSSRTMMVGRIGR 787
>BQ148771
Length = 680
Score = 40.8 bits (94), Expect = 8e-05
Identities = 30/97 (30%), Positives = 44/97 (44%), Gaps = 1/97 (1%)
Frame = -3
Query: 21 EYDKNIRSCIWAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRD 80
E K R +W + ++ V W +S PK GLGLR + N A + KL S+
Sbjct: 450 EIQKLQRKFVWGDTEVSRRYHAVGWETMSKPKTIYGLGLRRLDVMNKACIMKLGWSIYSG 271
Query: 81 KGKLWGRVLSQKYLSNKSV-LAGKYKRGDSYIWKGIV 116
L V+ KY ++S+ K DS +WK +V
Sbjct: 270 SNSLCTEVMRGKYQRSESLEEIFLEKPTDSSLWKALV 160
>BE998314
Length = 587
Score = 28.1 bits (61), Expect = 0.51
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 9/44 (20%)
Frame = +3
Query: 27 RSCIWAKGGQTHSWYLVPW---------CEVSCPKENGGLGLRS 61
R C W W LVPW C+VSCP++ +RS
Sbjct: 6 RRCPWHC*RSYDRWGLVPWYQELELS**CQVSCPRDPPRYWIRS 137
>TC86872 similar to GP|13898893|gb|AAK48904.1 Golgi SNARE 11 protein
{Arabidopsis thaliana}, partial (77%)
Length = 809
Score = 27.7 bits (60), Expect = 0.66
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 9 KNEFTFKLHLHLEYDKNIRSCIWAKGGQTHSWYL 42
+N FT +HL ++ SC++AKG SWYL
Sbjct: 333 RN*FTVSIHLLIQLSFKF-SCLFAKGIP*SSWYL 235
>TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non-LTR
retroelement reverse transcriptase {Oryza sativa
(japonica cultivar-group)}, partial (2%)
Length = 1262
Score = 26.6 bits (57), Expect = 1.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 66 NIAMLEKLVESLLRDKGKLWGRVLSQKY 93
N+++L K LL DK LW RVL +Y
Sbjct: 52 NLSLLGKWCWRLLVDKEGLWHRVLKARY 135
>TC78989 similar to PIR|T02607|T02607 probable cytochrome P450 T19L18.2
[similarity] - Arabidopsis thaliana, partial (76%)
Length = 2030
Score = 25.8 bits (55), Expect = 2.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 22 YDKNIRSCIWAKGGQTHSWYLVPWCEVSCPKEN 54
Y K R+ +W +S L WC+V C K+N
Sbjct: 1609 YGKPFRTRVW------NSPQLQAWCQVQCHKKN 1689
>BQ149667 homologue to GP|10638981|em protein phosphatase {Fagus sylvatica},
partial (57%)
Length = 646
Score = 25.8 bits (55), Expect = 2.5
Identities = 11/29 (37%), Positives = 17/29 (57%), Gaps = 3/29 (10%)
Frame = -1
Query: 23 DKNIRSCIWA---KGGQTHSWYLVPWCEV 48
+K++ +C WA K THSW L+ C +
Sbjct: 214 EKSVINCPWANRSKPSMTHSWALMMSCNL 128
>TC82948
Length = 705
Score = 25.8 bits (55), Expect = 2.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 43 VPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDK 81
V W +V P + G LG+RS S N A+ KL ++ K
Sbjct: 267 VSWEKVCRPIKEGSLGIRSLSKLNEALNLKLCWDMMISK 383
>TC90119 similar to GP|10172593|dbj|BAB01397. protein kinase-like protein
{Arabidopsis thaliana}, partial (13%)
Length = 780
Score = 25.8 bits (55), Expect = 2.5
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -1
Query: 40 WYLVPWCEVSCPKENG 55
W+ WC +SCP++ G
Sbjct: 150 WFCAFWCIISCPQDFG 103
>TC90775 similar to GP|15795142|dbj|BAB03130.
gb|AAF48080.1~gene_id:MQC3.4~similar to unknown protein
{Arabidopsis thaliana}, partial (57%)
Length = 757
Score = 25.8 bits (55), Expect = 2.5
Identities = 11/32 (34%), Positives = 18/32 (55%)
Frame = -2
Query: 47 EVSCPKENGGLGLRSTSLNNIAMLEKLVESLL 78
E+ CP++ GGL L S + ++ K+ LL
Sbjct: 735 ELKCPQQQGGLKLHSIKGQTLLVISKINGPLL 640
>AW774547 similar to GP|17221128|gb| glycoprotein gp2 {Equine herpesvirus 4},
partial (4%)
Length = 582
Score = 25.8 bits (55), Expect = 2.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 26 IRSCIWAKGGQTHSWYLVPWCEVSCPKENGGLG 58
I S + +K S ++PW + CP + G+G
Sbjct: 261 INSALHSKSKSKSS--IIPWMKTKCPMQTNGIG 353
>BI270342 similar to GP|1209631|gb| GNOM gene product {Arabidopsis thaliana},
partial (6%)
Length = 370
Score = 25.4 bits (54), Expect = 3.3
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 57 LGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLSQKYLSNKSVLAGKYKRG 107
L L+ S + +L+ L +S D KLW VL++ + K + GK KRG
Sbjct: 158 LALKLLSKVFLLLLQDLSQST--DFSKLWLNVLNRFEIFMKVKIRGKEKRG 304
>TC87388 similar to GP|12322847|gb|AAG51409.1 unknown protein; 15342-13483
{Arabidopsis thaliana}, partial (54%)
Length = 819
Score = 25.4 bits (54), Expect = 3.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 29 CIWAKGGQTHSWYLVPWCEVSCP 51
C W +G T+ WY+ C CP
Sbjct: 584 CKWCRGIDTNFWYIWYHCWF*CP 652
>BG451247 similar to GP|6730969|dbj beta-amyrin synthase {Glycyrrhiza
glabra}, partial (23%)
Length = 627
Score = 25.4 bits (54), Expect = 3.3
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -1
Query: 18 LHLEYDKNIRSCIWAKGGQTHSWYL-VPWCEVSCPKE 53
+H Y K +W G H WYL W SC K+
Sbjct: 600 IH*RYPKR*WFMVWKLGNLLHLWYLFCSWRFSSCWKD 490
>BQ124806 similar to SP|P42762|ERD1 ERD1 protein chloroplast precursor.
[Mouse-ear cress] {Arabidopsis thaliana}, partial (20%)
Length = 679
Score = 25.0 bits (53), Expect = 4.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 4 LPLLEKNEFTFKLHLHLEYDKNIRSCIWAKGGQTHSWYLV 43
LP+L EF K+HL + N+ S AKG +L+
Sbjct: 372 LPILRVEEFHLKMHL-VVMTSNVGSSAIAKGRHNSMGFLI 488
>BG580539
Length = 297
Score = 25.0 bits (53), Expect = 4.3
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -2
Query: 28 SCIWAKGGQT-HSWYLVPWCE 47
+C++A+ G H W++ WCE
Sbjct: 65 ACLYARAGLVVHHWWVGNWCE 3
>TC77067 weakly similar to PIR|C96759|C96759 protein serine carboxypeptidase
T18K17.3 [imported] - Arabidopsis thaliana, partial (71%)
Length = 1582
Score = 25.0 bits (53), Expect = 4.3
Identities = 11/38 (28%), Positives = 18/38 (46%)
Frame = +2
Query: 4 LPLLEKNEFTFKLHLHLEYDKNIRSCIWAKGGQTHSWY 41
LPLL +T+ L + D N+R + + G W+
Sbjct: 1004 LPLLSCRSYTYFLMGYWANDDNVRKALHIQKGSVAKWH 1117
>AL386717 similar to GP|6730969|dbj beta-amyrin synthase {Glycyrrhiza
glabra}, partial (19%)
Length = 465
Score = 24.6 bits (52), Expect = 5.6
Identities = 12/29 (41%), Positives = 16/29 (54%)
Frame = +2
Query: 55 GGLGLRSTSLNNIAMLEKLVESLLRDKGK 83
GGL + N A + K V+ LLR +GK
Sbjct: 377 GGLAAAGKTYTNCATIRKAVKFLLRIQGK 463
>TC87389 similar to GP|12322847|gb|AAG51409.1 unknown protein; 15342-13483
{Arabidopsis thaliana}, partial (81%)
Length = 1010
Score = 24.6 bits (52), Expect = 5.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 17 HLHLEYDKNIRSCIWAKGGQTHSWYLVPWC 46
H+HLE N C+WA + W+LV C
Sbjct: 604 HVHLEC--NCIVCLWAYWKRRWFWFLVLSC 687
>TC77297 homologue to PIR|T05726|T05726 GH1 protein - soybean (fragment),
partial (13%)
Length = 695
Score = 24.6 bits (52), Expect = 5.6
Identities = 10/28 (35%), Positives = 15/28 (52%)
Frame = +1
Query: 16 LHLHLEYDKNIRSCIWAKGGQTHSWYLV 43
LHLH D+ ++C W +G S L+
Sbjct: 526 LHLHQSLDRFSQNCSWVEGNAITSDCLI 609
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,711,311
Number of Sequences: 36976
Number of extensions: 70770
Number of successful extensions: 344
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of query: 119
length of database: 9,014,727
effective HSP length: 95
effective length of query: 24
effective length of database: 5,502,007
effective search space: 132048168
effective search space used: 132048168
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)
Lotus: description of TM0248.1