TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0247.8
         (170 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC79991 similar to GP|10177307|dbj|BAB10568. contains similarity...    29  0.80
TC87436 similar to PIR|T51575|T51575 2-hydroxyphytanoyl-CoA lyas...    29  1.0
TC80800 similar to GP|6606532|gb|AAF19195.1| pectate lyase 1 {Mu...    28  2.3
TC90469 similar to GP|11066213|gb|AAG28503.1 hexokinase {Citrus ...    28  2.3
TC89669 homologue to GP|1237082|emb|CAA65540.1 ADP-glucose pyrop...    27  3.0
TC79332 similar to PIR|JC6203|JC6203 SP8 binding protein homolog...    27  3.0
TC78622 weakly similar to GP|14587220|dbj|BAB61154. putative GTP...    27  4.0
BG587109 homologue to GP|22091671|em photosystem1 subunit A {Pin...    27  5.2
TC77186 phosphate transporter                                          27  5.2
CB894147 similar to GP|15375301|gb| putative c-myb-like transcri...    26  6.8
TC84004 type IIB calcium ATPase [Medicago truncatula]                  26  6.8
TC83336 similar to GP|13938440|gb|AAH07361.1 Similar to protein ...    26  6.8
NP501869 NP501869|AY115844.1|AAM55305.1 auxin influx carrier pro...    26  8.9
TC78474 homologue to PIR|T09550|T09550 phosphoprotein phosphatas...    26  8.9
BG584691 similar to PIR|E87601|E876 OmpA family protein [importe...    26  8.9
TC82522 similar to PIR|A96708|A96708 hypothetical protein T2E12....    26  8.9

>TC79991 similar to GP|10177307|dbj|BAB10568. contains similarity to zinc
           finger protein~gene_id:MDC12.23 {Arabidopsis thaliana},
           partial (8%)
          Length = 1023

 Score = 29.3 bits (64), Expect = 0.80
 Identities = 21/78 (26%), Positives = 34/78 (42%), Gaps = 9/78 (11%)
 Frame = -3

Query: 73  HALTRSHASVEF-----HAFHKVSRLSGVSSIHKVSRLSEASRLIPWMAN----KLLNER 123
           H L   H S++      H FH           H++    ++S+L P   +    KLL+ R
Sbjct: 547 HQLVHHHQSLKLYPQFQHPFH-----------HQLVHHHQSSKLYPQFQSPFHQKLLHHR 401

Query: 124 RSTNILRTYQTPQHLDPT 141
            S+ +   +Q P HL P+
Sbjct: 400 *SSKLYHQFQQPLHLQPS 347


>TC87436 similar to PIR|T51575|T51575 2-hydroxyphytanoyl-CoA lyase-like
            protein - Arabidopsis thaliana, partial (75%)
          Length = 1592

 Score = 28.9 bits (63), Expect = 1.0
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -3

Query: 70   VKFHALTRSHASVEFHAFHKVSRLSGVS--SIHKVSRLSEASRLIPWMANKLLNERRSTN 127
            + FH+ T+S + + F++  K  R+S  S  +I K +  S  S  I      LLN+ RSTN
Sbjct: 1569 LNFHS-TKSISGIPFNSNDKTIRISDSSRNTITKTNPHSPPSTSIQPSPRLLLNQHRSTN 1393

Query: 128  I 128
            I
Sbjct: 1392 I 1390


>TC80800 similar to GP|6606532|gb|AAF19195.1| pectate lyase 1 {Musa
            acuminata}, partial (86%)
          Length = 1216

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 12/41 (29%), Positives = 21/41 (50%)
 Frame = -3

Query: 75   LTRSHASVEFHAFHKVSRLSGVSSIHKVSRLSEASRLIPWM 115
            + +S + ++FH FH  S  S       ++  S A+ L PW+
Sbjct: 1094 INKSPSDLQFHPFHSPSGASSCFVTSLLNLSSGATNLFPWL 972


>TC90469 similar to GP|11066213|gb|AAG28503.1 hexokinase {Citrus sinensis},
           partial (33%)
          Length = 636

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 98  SIHKVSRLSEASRLIPWMANKLLNERRST-NILRTYQTPQH 137
           +IH +S+LS+ S     +  KLL  R +T  + RTY T  H
Sbjct: 315 NIHSISQLSKLSNWCLTLFPKLLQNRHATCPLSRTYHTVAH 193


>TC89669 homologue to GP|1237082|emb|CAA65540.1 ADP-glucose
           pyrophosphorylase {Pisum sativum}, partial (66%)
          Length = 1438

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 26/93 (27%), Positives = 40/93 (42%), Gaps = 3/93 (3%)
 Frame = -3

Query: 38  SILRQNTIIIKRVQPLTMTLRVINTLTKSHASVKFHALTRSHASVEFH---AFHKVSRLS 94
           SI+R ++ I  R + +     + N  T   ASV   A      S+ +    A  K S+  
Sbjct: 551 SIIRPSSSIFIRPKAVARFSSIGNAATVISASVSLCAWINFS*SIRYKWSPARIKYSKTL 372

Query: 95  GVSSIHKVSRLSEASRLIPWMANKLLNERRSTN 127
             S  HK    + A   +PW  + LLN+R S +
Sbjct: 371 CSSKSHKYCLTASA---VPWKHHTLLNKRHSNH 282


>TC79332 similar to PIR|JC6203|JC6203 SP8 binding protein homolog -
           cucumber, partial (49%)
          Length = 1486

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 27/91 (29%), Positives = 41/91 (44%)
 Frame = +2

Query: 11  TTSPTSLDTSPRVLAKLMSLKAYPKVKSILRQNTIIIKRVQPLTMTLRVINTLTKSHASV 70
           TT+P+S DTSP      ++L   P V++    N      V P  MTL  +++   + ++ 
Sbjct: 50  TTTPSSADTSPPPPRPTITLPPRPSVEAFFTSNA-----VSPGPMTL--VSSFFATESAT 208

Query: 71  KFHALTRSHASVEFHAFHKVSRLSGVSSIHK 101
               L  + AS    AF   S L+G  S  K
Sbjct: 209 FSQLLAGAMASP--LAFSSSSSLAGEYSFGK 295


>TC78622 weakly similar to GP|14587220|dbj|BAB61154. putative GTPase {Oryza
           sativa (japonica cultivar-group)}, partial (32%)
          Length = 1025

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 29/125 (23%), Positives = 55/125 (43%), Gaps = 5/125 (4%)
 Frame = +2

Query: 42  QNTIIIKRVQPLTMTLRVINTLTKSHAS--VKFHALTRSHASVEFHAFHKVSRLSGVSSI 99
           QN + + R     M + + N + +  A   +K H + +  + ++   +  + +  G    
Sbjct: 422 QNKMKVLRTLMTMMRMNLWNVVKRMLARKRLKVHLVNKMRSYIQRKVY--LIQN*GEQRR 595

Query: 100 HKVSRLSEASRLIPW---MANKLLNERRSTNILRTYQTPQHLDPTTLLVFPKLWFDFQCL 156
            K  RL++ + LIPW   M +KL+  +R+    R   T   +  T +L+  K      CL
Sbjct: 596 RKRRRLTKPAHLIPWMVIMTSKLITSKRT----RWMLTGVMVVTTMMLMTNKSTLRLPCL 763

Query: 157 PSRLL 161
             RL+
Sbjct: 764 VLRLM 778


>BG587109 homologue to GP|22091671|em photosystem1 subunit A {Pinus
           parviflora}, partial (29%)
          Length = 791

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
 Frame = +2

Query: 74  ALTRSHASVEFHA-----FHKVSRLSGVSSIHKV--SRLSEASRLIPWMANKLLNERRST 126
           AL+R   +   H       H+V  +    S+ KV  +   + S +  W++    +  R +
Sbjct: 77  ALSRDSCNGSLHTSEV*TMHRVIPVIWRKSLEKVFSAHFGQLSIIFLWLSGMYFHGARFS 256

Query: 127 NILRTYQTPQHLDPTTLLVFP 147
           N       P H+ P+  +V+P
Sbjct: 257 NYEACLSDPTHIGPSAQVVWP 319


>TC77186 phosphate transporter
          Length = 2314

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 13/48 (27%), Positives = 24/48 (49%)
 Frame = -1

Query: 46   IIKRVQPLTMTLRVINTLTKSHASVKFHALTRSHASVEFHAFHKVSRL 93
            I+  +QP T TL  I + TK H +     + +  A ++   + K S++
Sbjct: 2224 ILNSIQPKTYTLHSIESYTKKHRTASLL*IQQPVAKMQTEKWFKSSKM 2081


>CB894147 similar to GP|15375301|gb| putative c-myb-like transcription
          factor MYB3R-5 {Arabidopsis thaliana}, partial (7%)
          Length = 809

 Score = 26.2 bits (56), Expect = 6.8
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
 Frame = +1

Query: 8  ISQTTSPTS------LDTSPRVLAKLMSLKAYPKVKSILRQNTIIIKRVQPLTMTLRVIN 61
          I  TT P +       +T   +L K  +   YP   SI R+       VQPLT   +V+ 
Sbjct: 28 IGYTTPPRARVSELCTETPESILRK--AANTYPNTPSIFRRRRT---GVQPLTSPSKVLK 192

Query: 62 TLTKSHAS 69
              SHAS
Sbjct: 193VDNDSHAS 216


>TC84004 type IIB calcium ATPase [Medicago truncatula]
          Length = 3655

 Score = 26.2 bits (56), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 2    SACNAVISQTTSPTSLDTSPRVLAKLMS 29
            ++CNA  S   SP +  TSP +  KL++
Sbjct: 2534 ASCNAGASFVPSPVTATTSPNIFLKLVT 2451


>TC83336 similar to GP|13938440|gb|AAH07361.1 Similar to protein phosphatase
           1G (formerly 2C)  magnesium-dependent  gamma isoform
           {Homo sapiens}, partial (5%)
          Length = 655

 Score = 26.2 bits (56), Expect = 6.8
 Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 2/39 (5%)
 Frame = +1

Query: 93  LSGVSSIHKVSRLSEASRLI--PWMANKLLNERRSTNIL 129
           LS  +S   +S LS    L+  PWM NKL + +RS  ++
Sbjct: 4   LSANASFFTLSLLSLLLLLLHHPWMCNKLFSNQRSLRLI 120


>NP501869 NP501869|AY115844.1|AAM55305.1 auxin influx carrier protein
           [Medicago truncatula]
          Length = 1449

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 17/46 (36%), Positives = 23/46 (49%)
 Frame = -3

Query: 88  HKVSRLSGVSSIHKVSRLSEASRLIPWMANKLLNERRSTNILRTYQ 133
           HKV  L   SS   V R+SE   LIP+       ER++  +L T +
Sbjct: 304 HKVH*LDKQSSFQ*VHRISETLCLIPYQV-----ERKNMEVLTTLE 182


>TC78474 homologue to PIR|T09550|T09550 phosphoprotein phosphatase (EC
           3.1.3.16) 1  catalytic epsilon chain - alfalfa, complete
          Length = 1597

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 120 LNERRSTNILRTYQTPQHLDPTTLLVFPKLWFDFQCLPSRLLSL 163
           +N  ++ N+L+ +Q    +   T+LV   +W    C PSR LSL
Sbjct: 934 MNFLQTDNLLQYFQLQTTVVNLTMLVQ**VWTRT*CAPSRFLSL 1065


>BG584691 similar to PIR|E87601|E876 OmpA family protein [imported] -
           Caulobacter crescentus, partial (10%)
          Length = 871

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
 Frame = +3

Query: 117 NKLLNERRSTNILRTYQT----PQHLDPTTLLVFPKL--WFDFQCLPSRLLSLL 164
           NK  NER+   +LRT+ T             L+FP+L  W  F C    L  L+
Sbjct: 588 NKNTNERKQVGLLRTFHTIGLGTSPSPKKEQLLFPRLRNWCIFLCFFGNLALLV 749


>TC82522 similar to PIR|A96708|A96708 hypothetical protein T2E12.9
           [imported] - Arabidopsis thaliana, partial (33%)
          Length = 727

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 22/71 (30%), Positives = 32/71 (44%), Gaps = 4/71 (5%)
 Frame = -3

Query: 52  PLTMTLRVINTLTKSHASV----KFHALTRSHASVEFHAFHKVSRLSGVSSIHKVSRLSE 107
           PL++T    N+ T S + V    K   L R+H S++   FH VS     +S    + +SE
Sbjct: 203 PLSLTPN*SNSKTHSFSQVY*ISKSKTLKRAHTSIQKCLFHTVSTYLHTNSDFFPNLISE 24

Query: 108 ASRLIPWMANK 118
                 W  NK
Sbjct: 23  N----VWNVNK 3


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,300,908
Number of Sequences: 36976
Number of extensions: 69099
Number of successful extensions: 452
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of query: 170
length of database: 9,014,727
effective HSP length: 89
effective length of query: 81
effective length of database: 5,723,863
effective search space: 463632903
effective search space used: 463632903
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)