TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0247.1
         (323 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {V...    62  3e-10
CB892913 similar to GP|1769897|emb lectin receptor kinase {Arabi...    50  2e-06
TC87130 weakly similar to PIR|T04067|T04067 hypothetical protein...    28  3.7
TC88545 similar to GP|13560783|gb|AAK30205.1 poly(A)-binding pro...    27  8.1

>BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
           vinifera}, partial (24%)
          Length = 615

 Score = 62.0 bits (149), Expect = 3e-10
 Identities = 46/154 (29%), Positives = 79/154 (50%), Gaps = 1/154 (0%)
 Frame = +1

Query: 24  DLKDHYSAKP-PVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREK 82
           D +  Y A P PVFDGE +     RIE +      DLW+ V   Y  L   D   + + K
Sbjct: 145 DSETSYKAPPLPVFDGENYHIWAARIEAYLEA--NDLWEAVEEDYEVLPLSDNPTMAQIK 318

Query: 83  MNGDQKKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKAL 142
            + ++K +     +AR  L  A+S E + +I   +SA  I++ L+  +EG+E  +  +AL
Sbjct: 319 NHKERKTR---KSKARATLFAAVSEEIFTRIMTIKSAFEIWNFLKTEYEGDERIRGMQAL 489

Query: 143 ALIKKYGAFKMEPDESIEAMFSRF*MLIAGIRVL 176
            LI+++   KM+  E+I+   ++   +   +R+L
Sbjct: 490 NLIREFEMQKMKESETIKEYANKLISIANKVRLL 591


>CB892913 similar to GP|1769897|emb lectin receptor kinase {Arabidopsis
           thaliana}, partial (35%)
          Length = 837

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 30/111 (27%), Positives = 58/111 (52%)
 Frame = +3

Query: 30  SAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQKK 89
           S + P+  G  +D C   I+   L    D+W++V  GY    DED +   +     D +K
Sbjct: 117 SFQVPLLKGSTYDNCF--IKMMALLGAHDVWEVVEKGYKESQDEDSLTKAQRDTLKDSRK 290

Query: 90  KYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETK 140
           + K   +A  ++  A+  +E+EKI++  SAK  ++ L+ + +G ++ K+ +
Sbjct: 291 RDK---KALFLIYQALDEDEFEKISNATSAKEAWEKLKTSCQGEDKVKKVR 434


>TC87130 weakly similar to PIR|T04067|T04067 hypothetical protein F28M11.90
           - Arabidopsis thaliana, partial (71%)
          Length = 1510

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 82  KMNGDQKKKYKDHHRARTILLNAISYEEYEKITDRES 118
           K +  +KKK KDH     I +  +  EE++K TDR S
Sbjct: 903 KSSKQEKKKVKDH----VIAMRDVELEEHKKSTDRGS 1001


>TC88545 similar to GP|13560783|gb|AAK30205.1 poly(A)-binding protein
           {Daucus carota}, partial (35%)
          Length = 866

 Score = 27.3 bits (59), Expect = 8.1
 Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +2

Query: 65  YGYTRLVDEDGVKIPREKMNG---DQKKKYKDHHRARTILLNAISYEEYEKITDRESAKS 121
           YG+ +  +E+  +   +K+NG   + K  Y  H + +    NA+S  ++  +  +  ++S
Sbjct: 569 YGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSES 748

Query: 122 IFD 124
           + D
Sbjct: 749 VTD 757


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.343    0.150    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,977,569
Number of Sequences: 36976
Number of extensions: 87713
Number of successful extensions: 839
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of query: 323
length of database: 9,014,727
effective HSP length: 96
effective length of query: 227
effective length of database: 5,465,031
effective search space: 1240562037
effective search space used: 1240562037
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 58 (26.9 bits)