BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0240.16
(1549 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 195 8e-69
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 201 1e-51
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 175 1e-43
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 169 8e-42
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 165 1e-40
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 152 1e-36
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 133 6e-31
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 76 4e-29
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 119 7e-27
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 119 1e-26
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 110 6e-24
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 108 2e-23
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 91 3e-18
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 90 8e-18
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 73 1e-12
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 71 3e-12
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 69 2e-11
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 65 3e-10
TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol po... 60 7e-09
BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse ... 57 7e-08
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 195 bits (495), Expect(2) = 8e-69
Identities = 93/141 (65%), Positives = 117/141 (82%)
Frame = -2
Query: 1130 VTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNG 1189
+TRNK++LV QGY+Q+EGIDY E F+PVAR+EAIR+LI+F+ L+QMDVKSAF+NG
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 1190 YISEEVYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDN 1249
+ EEV+VKQPPGFED + P HV++L K+LYGLKQAPRAWYERLS FLL+N F RGK DN
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 1250 TLFCRTYKNDILIVQIYVDDI 1270
TLF + ++LI+Q+YVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 85.9 bits (211), Expect(2) = 8e-69
Identities = 39/64 (60%), Positives = 49/64 (75%)
Frame = -3
Query: 1061 LLSLKGFVSLIEPKSVDEALEDKGWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVF 1120
L+S F+S IEPK+V EAL D WI +MQEEL QF ++ VW L+P+P+G VIGT+WVF
Sbjct: 621 LVSFSAFISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVF 442
Query: 1121 RNKL 1124
RNKL
Sbjct: 441 RNKL 430
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 201 bits (512), Expect = 1e-51
Identities = 95/217 (43%), Positives = 142/217 (64%), Gaps = 1/217 (0%)
Frame = +1
Query: 1305 IQIDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGM 1364
+++ Q YI Q+KY +LL++F M N+S+ P+ P C L K+E KV Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 1365 IGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYT 1424
+G L+YL A+RPD+++ + L +RF + P E H+ AVKR+L+YL GT NLG+MY++
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 1425 LSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQT 1484
L + D+D+AGD +RKSTSG L S V+WSSK+Q + LST +AE+++AA C Q+
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 1485 IWMKNHLEDYGLSLK-KVPIYCDNTAAISLSKNPILH 1520
+WM+ LE G + + +YCDN + I LSKNP+LH
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 175 bits (444), Expect = 1e-43
Identities = 97/218 (44%), Positives = 130/218 (59%), Gaps = 3/218 (1%)
Frame = +1
Query: 1064 LKGFVSLIEPKSVD---EALEDKGWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVF 1120
LK V L EP D L D W+QAM+ E N W L+P P IG KWV+
Sbjct: 25 LKPKVFLTEPCPQDCENLPLSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVY 204
Query: 1121 RNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQM 1180
R K N G V + KARLVA+G+SQ G DYTETF+PV + IRL+++ ++ + + Q+
Sbjct: 205 RVKENPDGSVNKFKARLVAKGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQI 384
Query: 1181 DVKSAFLNGYISEEVYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQN 1240
D+ +AFLNG++ EEVY+ QP GFE + V KL KSLYGLKQAPRAWYE L+S +Q
Sbjct: 385 DINNAFLNGFLQEEVYMSQPQGFE-AANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQF 561
Query: 1241 EFVRGKGDNTLFCRTYKNDILIVQIYVDDIIFGSANPS 1278
F + + D +L + + IYVDDI+ ++ S
Sbjct: 562 GFTKSRCDPSLLIYNQNGACIYLXIYVDDILITGSSAS 675
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 169 bits (428), Expect = 8e-42
Identities = 91/251 (36%), Positives = 148/251 (58%), Gaps = 6/251 (2%)
Frame = +3
Query: 1072 EPKSVDEALEDKGWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEKGEVT 1131
+P + +EA++ + W +M E++ +N+ W L G IG KW+F+ KLNE GE+
Sbjct: 39 DPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNENGEIE 218
Query: 1132 RNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSV---NHNIILHQMDVKSAFLN 1188
+ KARLVA+GYSQQ G+DYTE FAPVAR + IR++I+ + + + M + +
Sbjct: 219 KYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS*M*KAHSCME 398
Query: 1189 GYISEEVYVKQPPGFEDNKHPEHVY--KLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGK 1246
+ + + + V ++K++LYGLKQAPRAWY R+ ++ + F +
Sbjct: 399 N*MRKFLLINH------RVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKEGFEKCP 560
Query: 1247 GDNTLFCRTYK-NDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGI 1305
++TLF + + ILI+ +YVDD+IF + ++ +EF K M+ EF MS +G++ YFLG+
Sbjct: 561 YEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKMHYFLGV 740
Query: 1306 QIDQRPGVTYI 1316
++ Q YI
Sbjct: 741 EVTQNEKGIYI 773
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 165 bits (417), Expect = 1e-40
Identities = 83/183 (45%), Positives = 116/183 (63%)
Frame = -1
Query: 1073 PKSVDEALEDKGWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEKGEVTR 1132
P+S +EA+EDK W +++ E KND W PKG + ++W+F K G + R
Sbjct: 558 PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379
Query: 1133 NKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYIS 1192
K RLVA+G++ G DY ETFAPVA+L IR+++S +VN L QMDVK+AFL G +
Sbjct: 378 KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199
Query: 1193 EEVYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTLF 1252
+EVY+ PPG E +V +LKK++YGLKQ+PRAWY +LS+ L F + + D+TLF
Sbjct: 198 DEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLF 19
Query: 1253 CRT 1255
T
Sbjct: 18 TLT 10
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 152 bits (384), Expect = 1e-36
Identities = 86/241 (35%), Positives = 132/241 (54%)
Frame = +2
Query: 1212 VYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTLFCRTYKNDILIVQIYVDDII 1271
V +L+KS+YGLKQA R WY +LS L+ +++ D +LF + + + +YVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 1272 FGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQRPGVTYIHQKKYTLELLKKFNM 1331
+ S + + F++ +G L+YFLG+++ + ++Q+KYTLELL+
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 1332 SDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSD 1391
+ TP + L + + YR +IG L+YLT +RPDI F+V ++F S
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 1392 PRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLG 1451
P++ H A R+L+YLK GL Y TS LS F D+D+A RKS +G FLG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
Query: 1452 S 1452
S
Sbjct: 740 S 742
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 133 bits (334), Expect = 6e-31
Identities = 75/211 (35%), Positives = 115/211 (53%), Gaps = 2/211 (0%)
Frame = +1
Query: 750 LELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWVKFLRHKDETHTMFTNFITQVQKEF 809
L+ +H DL+GP K S GG++Y + I+DD+ R WV FLR+K+ET F + V+ +
Sbjct: 97 LDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQT 276
Query: 810 QSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPRTPQQNGVVERKNITLQEMARTMM 869
+V + +D+ EF + F + + GI+ + + PR PQQNGV ER TL E AR M+
Sbjct: 277 GKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCML 456
Query: 870 QESSM--AKHFWAEAINTACYIQNRISIRPILEKTPYELCKGRQPDISYFHPFGSTCFML 927
+ + + W EA +TAC++ NR + K P ++ G D S FG + L
Sbjct: 457 SNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYAL 636
Query: 928 NTKEQLGKFDSKALKCYFLGYSERSKGFRIY 958
GK +A +C FL Y+ SKG+R++
Sbjct: 637 VND---GKLAPRAGECIFLSYASESKGYRLW 720
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 76.3 bits (186), Expect(2) = 4e-29
Identities = 38/78 (48%), Positives = 54/78 (68%)
Frame = +1
Query: 1400 VKRILKYLKGTTNLGLMYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSS 1459
VKRI++Y+KGT+ + + + SE T+ G+ D+DFAGD +RKST+G L V+W S
Sbjct: 1 VKRIMRYIKGTSGVAVCFGG-SELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 1460 KRQNTIALSTAEAEYVSA 1477
K Q +ALST EAEY++A
Sbjct: 178 KLQTVVALSTTEAEYMAA 231
Score = 72.0 bits (175), Expect(2) = 4e-29
Identities = 25/74 (33%), Positives = 51/74 (68%)
Frame = +3
Query: 1476 SAATCCTQTIWMKNHLEDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRD 1535
S C + IWM+ +E+ G +++ +YCD+ +A+ +++NP HSR KHI ++YH++R+
Sbjct: 228 SLPQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVRE 407
Query: 1536 HVQKGTLSLEYVDT 1549
V++G++ ++ + T
Sbjct: 408 VVEEGSVDMQKIHT 449
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 119 bits (299), Expect = 7e-27
Identities = 55/120 (45%), Positives = 83/120 (68%), Gaps = 1/120 (0%)
Frame = +2
Query: 1431 ADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNH 1490
+D+AGD RKSTSG LG+ ++WSSK+Q +A STAEAEY+++ +C TQT+W++
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1491 LE-DYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDT 1549
LE + IYCDN +AI+LSKNP+ H R+KHI++++H IR+ + + + +EY T
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 119 bits (297), Expect = 1e-26
Identities = 79/239 (33%), Positives = 125/239 (52%), Gaps = 3/239 (1%)
Frame = -3
Query: 658 GKRKNDIYKIRSSELLSQKVKCLMSVN---DEQWIWHRRLGHASLRKISQLSKLNLVRGL 714
G K D+Y + + +S KC + + ++ +WH RLGH R LNL+ L
Sbjct: 683 GVTKGDLYMLEKLDPVSN-YKCSFTSSSSLNKDALWHARLGHPHGRA------LNLM--L 531
Query: 715 PHLKYSSEALCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELV 774
P + + ++ CEAC GK K F + V +L++ DL+ + S KY +
Sbjct: 530 PGVVFENKN-CEACILGKHCKNVFPRTSTVYENC-FDLIYTDLW-TAPSLSRDNHKYFVT 360
Query: 775 IVDDYSRWTWVKFLRHKDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFN 834
+D+ S++TW+ + KD F NF V + + + +RSD+GGE+ + AF+ +
Sbjct: 359 FIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTSYAFKSHLD 180
Query: 835 SQGISHNFSCPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRI 893
GI H SCP TPQQNGV +RKN L E+AR++M +++ ++TACY+ N I
Sbjct: 179 HHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMFQAN---------VSTACYLINWI 30
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 110 bits (274), Expect = 6e-24
Identities = 55/132 (41%), Positives = 77/132 (57%)
Frame = +1
Query: 828 AFEDLFNSQGISHNFSCPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTAC 887
+F N + + N TPQQNGV ER N TL E R M++ + MAK FWAEA+ TAC
Sbjct: 28 SF*HFVNKRVL*GNSXVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTAC 207
Query: 888 YIQNRISIRPILEKTPYELCKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLG 947
Y+ NR I KTP E+ KG+ D S H FG +++ ++ K D K+ KC FLG
Sbjct: 208 YVINRSPSTVIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLG 387
Query: 948 YSERSKGFRIYN 959
Y++ KG+ +++
Sbjct: 388 YADNVKGYXLWD 423
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 108 bits (269), Expect = 2e-23
Identities = 52/149 (34%), Positives = 88/149 (58%), Gaps = 2/149 (1%)
Frame = +1
Query: 1399 AVKRILKYLKGTTNLGLMYRKTS--EYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVT 1456
A+K +LKYL + L Y K + E L G+ DAD+AG+ RKS SG L ++
Sbjct: 4 ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183
Query: 1457 WSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVPIYCDNTAAISLSKN 1516
W + +Q+ + LST +AEY++ IW+K + + G++ + V I+CD+ +AI L+ +
Sbjct: 184 WKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKIHCDSQSAIHLANH 363
Query: 1517 PILHSRAKHIEVKYHYIRDHVQKGTLSLE 1545
+ H R KHI+++ H+IRD ++ + +E
Sbjct: 364 QVYHERTKHIDIRLHFIRDMIESKEIVVE 450
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 90.9 bits (224), Expect = 3e-18
Identities = 42/87 (48%), Positives = 61/87 (69%)
Frame = +2
Query: 1104 LMPKPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAI 1163
L+ KP G IG +W+++ K NE G + + KARLVA+GY +Q+GID+ E FAPV R+E I
Sbjct: 65 LVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPVVRIETI 244
Query: 1164 RLLISFSVNHNIILHQMDVKSAFLNGY 1190
LL++ + + +H +DVK AFLNG+
Sbjct: 245 *LLLALAATNGC*IHHIDVKIAFLNGH 325
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 89.7 bits (221), Expect = 8e-18
Identities = 45/122 (36%), Positives = 73/122 (58%), Gaps = 3/122 (2%)
Frame = +1
Query: 1375 RPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMY---RKTSEYTLSGFCDA 1431
RPDI +SV + ++F DPR+ HL A RIL+Y++GT GL++ K+ Y L + D+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1432 DFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHL 1491
D+ GD R+STSG ++W +K+Q ALS+ EAEY++ Q +W+ + +
Sbjct: 301 DWCGD---RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 1492 ED 1493
++
Sbjct: 472 KE 477
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 72.8 bits (177), Expect = 1e-12
Identities = 42/125 (33%), Positives = 68/125 (53%), Gaps = 3/125 (2%)
Frame = +1
Query: 1224 QAPRAWYERLSSFLLQNEFVRGKGDNTLFCR---TYKNDILIVQIYVDDIIFGSANPSLC 1280
Q+PR W++R + + + +++ + D+ +F + T K ILIV YVDDI +
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIV--YVDDIFLTGDHGK*I 174
Query: 1281 KEFSKLMQAEFEMSMMGELKYFLGIQIDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTP 1340
K L+ EFE+ +G LKYFLG+++ + + I Q+KY L+LLK+ M C + P
Sbjct: 175 KRLKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Query: 1341 MHPTC 1345
C
Sbjct: 355 YGCNC 369
Score = 36.2 bits (82), Expect = 0.10
Identities = 20/56 (35%), Positives = 32/56 (56%)
Frame = +2
Query: 1333 DCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARF 1388
D S+TPM T L + + V + Y+ ++G L+YL+ +RPDI F V ++F
Sbjct: 332 DVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQF 499
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 71.2 bits (173), Expect = 3e-12
Identities = 35/109 (32%), Positives = 61/109 (55%)
Frame = -2
Query: 886 ACYIQNRISIRPILEKTPYELCKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYF 945
ACY+ NRI R + ++ P+E+ R+P ++Y FG C++L E K ++++ K F
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 946 LGYSERSKGFRIYNIIHQTVEESIQIRFDDKLGSEKSKLFERFADLSID 994
+GYS KG++ Y+ + V S ++F ++ G + K E DL+ D
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYYEEKNQEDLRDLTSD 378
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 68.6 bits (166), Expect = 2e-11
Identities = 36/104 (34%), Positives = 58/104 (55%)
Frame = -3
Query: 1369 LYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGF 1428
+ LT P+I FS++L +R+ S P H +K I KYLKG ++GL Y K L G+
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 1429 CDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEA 1472
+A + D + +S +G G+ +++W S + +TIA S+ A
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA 220
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 64.7 bits (156), Expect = 3e-10
Identities = 34/74 (45%), Positives = 47/74 (62%)
Frame = -2
Query: 1154 FAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVKQPPGFEDNKHPEHVY 1213
F P+ +L I L+S N+ L +DVK+AFL G + E++Y+ QP GF + + V
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGF-S*EVGKMVG 378
Query: 1214 KLKKSLYGLKQAPR 1227
KLKKS+YGLKQ PR
Sbjct: 377 KLKKSMYGLKQGPR 336
>TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol polyprotein
{Oryza sativa}, partial (1%)
Length = 638
Score = 60.1 bits (144), Expect = 7e-09
Identities = 51/190 (26%), Positives = 88/190 (45%), Gaps = 1/190 (0%)
Frame = +2
Query: 994 DCSEANQPIKSPEDVAPEAEASEDFPTTSDPLQKKK-RIVASHPEELIIGNKDAPVRTRS 1052
D E + KS +V E+ E+ +P Q +K + SH L +K +
Sbjct: 41 DLEEIQEDFKSHGEVQEESNYIEEIKGFQEPTQLRKIKE*ESHLVTLNSSSKSYHIFHYV 220
Query: 1053 MLKPSEETLLSLKGFVSLIEPKSVDEALEDKGWIQAMQEELDQFTKNDVWTLMPKPKGFH 1112
S + SL S IEPK+ +A + + W+ AM++E+ +N+ TL P +G
Sbjct: 221 GYSFSAKHRASLAAITSNIEPKNYVQAAQ*QEWLAAMEQEIQVLEENNTSTLEPLREGKK 400
Query: 1113 VIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVN 1172
+ + V++ GE+ + KA+LVA+ + Q EG D+ + + + R L++ +
Sbjct: 401 WVDCRPVYKIIHKANGEIEKYKAQLVAKDFVQVEGEDF*D-LCLSNKDDNCRCLLTIAAA 577
Query: 1173 HNIILHQMDV 1182
LH MDV
Sbjct: 578 KG*QLHLMDV 607
>BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse transcriptase
homolog - rape retrotransposon copia-like (fragment),
partial (84%)
Length = 249
Score = 56.6 bits (135), Expect = 7e-08
Identities = 24/46 (52%), Positives = 33/46 (71%)
Frame = -1
Query: 1191 ISEEVYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSF 1236
+ E++Y+ QP GF +HV KL+KSLYGLKQ+PR WY+R S+
Sbjct: 246 LEEKIYMTQPEGFLFPGKEDHVCKLRKSLYGLKQSPRQWYKRFDSY 109
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.330 0.140 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,667,701
Number of Sequences: 36976
Number of extensions: 701223
Number of successful extensions: 4620
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 3390
Number of HSP's successfully gapped in prelim test: 186
Number of HSP's that attempted gapping in prelim test: 1138
Number of HSP's gapped (non-prelim): 3708
length of query: 1549
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1440
effective length of database: 4,984,343
effective search space: 7177453920
effective search space used: 7177453920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0240.16