BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0240.1
(1666 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna... 186 7e-47
BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ... 131 2e-30
CB065285 weakly similar to PIR|A84500|A84 probable retroelement ... 99 2e-20
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana... 92 2e-18
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis... 89 2e-17
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin... 87 7e-17
BG587127 weakly similar to PIR|H84506|H84 probable retroelement ... 64 4e-10
BG586308 weakly similar to PIR|F84528|F8 probable retroelement p... 59 1e-08
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro... 59 2e-08
AL367832 weakly similar to GP|14091845|gb Putative retroelement ... 58 3e-08
BG644720 45 2e-06
TC83629 weakly similar to GP|6692261|gb|AAF24611.1| putative RNa... 51 4e-06
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ... 45 3e-04
AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thalia... 44 4e-04
TC91935 40 0.010
TC91086 39 0.022
BG644740 similar to PIR|A84460|A84 probable retroelement pol pol... 36 0.11
TC91923 weakly similar to GP|1946369|gb|AAB63087.1| unknown prot... 33 0.71
TC91530 similar to GP|13377502|gb|AAK20740.1 LRK33 {Triticum aes... 32 1.6
BI270262 similar to PIR|T51536|T515 hypothetical protein T20K14_... 32 2.1
>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
alternata}, partial (21%)
Length = 1540
Score = 186 bits (472), Expect = 7e-47
Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 3/349 (0%)
Frame = +1
Query: 830 LVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMP 889
L+ +K+ +E LL FI+ + A V+ V K G +R C+D+R LNA T KD Y +P
Sbjct: 502 LLVLKKTLEDLLDKGFIKASGSAAG-APVLFVRKPGGGIRFCVDYRALNAITKKDRYPLP 678
Query: 890 IAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLKNA 949
+ + AG + + LD + ++++ I +ED KTAFR G +EW+V PFGL A
Sbjct: 679 LISETLRRVAGARWFTKLDVVAAFHKMRIKDEDQEKTAFRT--RYGLFEWIVCPFGLTGA 852
Query: 950 GATYQRVMNTIFHDFIETFMQVYIDDIVV-KSPSRDDQLLHLRKSFERMRKYGLKMNPLK 1008
AT+QR +N H+F++ F+ YIDD+++ + S+ D +R+ R+ GL ++P K
Sbjct: 853 PATFQRYINKTLHEFLDDFVTAYIDDVLIYTTGSKKDHEAQVRRVLRRLADAGLSLDPKK 1032
Query: 1009 CAFGVIAGDFLGFVVHK-KGIEINKNKAKAILDTNPPTSKKQLQSLLGKINFLRRFIVNL 1067
C F V ++GF++ KG+ + K AI D PP S K +S LG N+ + FI
Sbjct: 1033 CEFSVTTVKYVGFILTAGKGVSCDPLKLAAIRDWLPPGSVKGARSFLGFCNYYKDFIPGY 1212
Query: 1068 SEKTKSFSPLLRLKKED-TFRWEAEHQKAFDELKAYLSSPPVMAPPIGGKPMKLYISATN 1126
SE T+ PL RL ++D FRW AE + AF +LK + PV+ + +
Sbjct: 1213 SEITE---PLTRLTRKDFPFRWGAEQEAAFTKLKRLFAEEPVLRMFDPEAVTTVETDCSG 1383
Query: 1127 GTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVK 1175
+G +L QED + + S+ L+ AE Y + +K L ++ +C++
Sbjct: 1384 FALGGVLTQEDGTGAAHPVAFHSQRLSPAEYNYPIHDKELLAVW-ACLR 1527
>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
thaliana, partial (13%)
Length = 763
Score = 131 bits (330), Expect = 2e-30
Identities = 65/136 (47%), Positives = 96/136 (69%)
Frame = +2
Query: 921 EDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKS 980
+D+ KTAF GTY + VMPFGLKNAG+TYQR++N +F D + M+VYIDD++VKS
Sbjct: 11 DDLEKTAFITDR--GTYCYKVMPFGLKNAGSTYQRLVNRMFADKLGNTMEVYIDDMLVKS 184
Query: 981 PSRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILD 1040
D L HL++ F+ + +Y +K+NP KC FGV +G+FLG++V ++GIE+N + AILD
Sbjct: 185 LRATDHLNHLKE*FKTLDEYIMKLNPAKCTFGVTSGEFLGYIVTQQGIEVNPKQITAILD 364
Query: 1041 TNPPTSKKQLQSLLGK 1056
P + +++Q L G+
Sbjct: 365 LPSPKNSREVQRLTGE 412
Score = 81.3 bits (199), Expect = 3e-15
Identities = 49/145 (33%), Positives = 80/145 (54%), Gaps = 7/145 (4%)
Frame = +3
Query: 1038 ILDTNPPTSKKQLQSLL-------GKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEA 1090
IL +PP +Q + G+I L RFI ++K F LL K F W+
Sbjct: 336 ILSRSPPY*TSLVQRIAERSSDSRGRIAALNRFISRSTDKCLPFYKLLCGNKR--FVWDE 509
Query: 1091 EHQKAFDELKAYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSR 1150
+ ++AF++LK YL++PPV++ P G + LYI+ ++ + S+L +ED +++ IFY S+
Sbjct: 510 KCEEAFEQLKQYLTTPPVLSKPEAGDTLSLYIAISSTAVSSVLIRED-RGEQKPIFYTSK 686
Query: 1151 VLNDAETRYTMIEKLCLCLYFSCVK 1175
+ D ETRY +EK+ + S K
Sbjct: 687 RMTDPETRYPTLEKMAFAVITSARK 761
>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
polyprotein [imported] - Arabidopsis thaliana, partial
(2%)
Length = 592
Score = 98.6 bits (244), Expect = 2e-20
Identities = 63/169 (37%), Positives = 91/169 (53%)
Frame = -2
Query: 1254 WKLFFDGSSHKNGTGIGMFIVSPGGTPTKFKFRIKKKCSNNEAEYEALISSLEILIALGA 1313
W L FDG+ + G GIG IVSP G F RI +C+NN AEYEA I +E I +
Sbjct: 534 WGLVFDGAVNAYGKGIGAVIVSPQGHYIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 355
Query: 1314 RNVVVKGDSELVIKQLTKEYKCISENLAKYYTKANNLLAKFDDARLGHVSRIDNQEANEL 1373
+++ + GDS LVI Q+ E++ NL Y A LL F L H+ R +NQ A+ L
Sbjct: 354 KHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 175
Query: 1374 AQIASGYMVDKYRLKELIEVKEKLNPSDLNVLVIDNMAPKDWRKPIVDY 1422
A ++S + V+ + +I+V+ PS +V I N+ + +VDY
Sbjct: 174 ATLSSMFRVNHWNDVPIIKVQRLERPS--HVFAIGNVIDQTGEN-VVDY 37
>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
(10%)
Length = 624
Score = 92.0 bits (227), Expect = 2e-18
Identities = 52/188 (27%), Positives = 90/188 (47%)
Frame = +2
Query: 1448 LFKKNVDGTLLKCLSDDDALIAISAVHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCME 1507
L+K+ D ++C+++++ + H H A K + + G +WPT+ KD
Sbjct: 41 LYKQCADNIYIRCVAEEEIPGILFHCHGSNYAGHFAVSKTVSKIQQAGFWWPTMFKDAHS 220
Query: 1508 YAKGCQDCQRHAGIQHVPASELHSIIKPWPFRGWALDLIGEINPCSSRQHKYIIVAIDYF 1567
+ C CQR I + I++ F W +D +G SS +KYI+VA+DY
Sbjct: 221 FISKCDPCQRQGNIS*RNEMPQNFILEVEVFDVWGIDFMGPFP--SSYNNKYILVAVDYV 394
Query: 1568 TKWVEAIPLQNVTQDTVIDFIQNHIVYRFGLPESLTTDQGTVFVGQKVASFTESWGIKLL 1627
+KWVEAI V+ ++ I RFG+P + +D G+ F+ + + G++
Sbjct: 395 SKWVEAIASPTNDATVVVKMFKSVIFPRFGVPRVVISDGGSHFINKVFEKLLKKNGVRHK 574
Query: 1628 TSTPYYAQ 1635
+T Y+ Q
Sbjct: 575 VATAYHPQ 598
>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
chromosome II BAC F26H6; putative retroelement pol
polyprotein, partial (1%)
Length = 636
Score = 88.6 bits (218), Expect = 2e-17
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 25/167 (14%)
Frame = -2
Query: 1164 KLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAP 1223
K C L ++ +L++Y+ + S D IK++ KP L RI +W + L+EY + Y
Sbjct: 635 KTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRS 456
Query: 1224 LKAVKGQAVADFLVDHTL----------PKEIVTYV------------GVQP---WKLFF 1258
KA+KG +AD L L P E + Y+ G P W L F
Sbjct: 455 QKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIF 276
Query: 1259 DGSSHKNGTGIGMFIVSPGGTPTKFKFRIKKKCSNNEAEYEALISSL 1305
DG+ + G GIG +++P G F R++ C+NN AEYEA I +
Sbjct: 275 DGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGI 135
>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
Ty3-Gypsy type {Oryza sativa}, partial (15%)
Length = 716
Score = 86.7 bits (213), Expect = 7e-17
Identities = 55/179 (30%), Positives = 100/179 (55%)
Frame = +2
Query: 824 RFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPK 883
R +P L +K +++ LL FI+ + Y + V+ + KK+G +R+ ID+ LN K
Sbjct: 92 RINPLKLKVLKLQLKDLLEKGFIQPSIYP*GVV-VLFLKKKDGFLRMSIDYPQLNNVNIK 268
Query: 884 DEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMP 943
+Y +P+ + + D+ G ++ +D G +Q + EDV KTAFR G YE +VM
Sbjct: 269 IKYPLPLIDELFDNLQGSKWFFKIDLRLG*HQHRVIGEDVPKTAFRI--RYGHYEILVMS 442
Query: 944 FGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQLLHLRKSFERMRKYGL 1002
FG N + +MN +F D++++ + V+ +DI++ S + ++ HLR + + ++ GL
Sbjct: 443 FG*TNPPMAFMELMNRVFQDYLDSLVIVFSNDILIYSKNENEHENHLRLALKVLKDIGL 619
>BG587127 weakly similar to PIR|H84506|H84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(13%)
Length = 415
Score = 64.3 bits (155), Expect = 4e-10
Identities = 42/125 (33%), Positives = 61/125 (48%)
Frame = +3
Query: 1270 GMFIVSPGGTPTKFKFRIKKKCSNNEAEYEALISSLEILIALGARNVVVKGDSELVIKQL 1329
G+ + SP K FR++ SNNE YEALI+ + + L RN+ DS+LV Q
Sbjct: 3 GIRLTSPTNEILKQSFRLEFHASNNETNYEALIAGVRLAHGLKIRNIHAYCDSQLVASQF 182
Query: 1330 TKEYKCISENLAKYYTKANNLLAKFDDARLGHVSRIDNQEANELAQIASGYMVDKYRLKE 1389
+ EY+ E + Y L K D L + R +N +A+ LA +AS LK
Sbjct: 183 SGEYEARDELMDTYLKLVQKLAQKLDYFALTRIPRSENVQADALAALASS---SDPELKR 353
Query: 1390 LIEVK 1394
+I V+
Sbjct: 354 VIPVR 368
>BG586308 weakly similar to PIR|F84528|F8 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 686
Score = 59.3 bits (142), Expect = 1e-08
Identities = 30/66 (45%), Positives = 41/66 (61%)
Frame = -2
Query: 1597 GLPESLTTDQGTVFVGQKVASFTESWGIKLLTSTPYYAQANGQVEAANKTLISLIKNILV 1656
GLP + TD G+ F+ K F E W I+L T++P Y Q+NGQ EA+NK +I +K L
Sbjct: 682 GLPYEIVTDNGSHFISNKFREFCERWRIRLNTASPRYPQSNGQAEASNKIIIDGLKKRL- 506
Query: 1657 ENLKDG 1662
+LK G
Sbjct: 505 -DLKKG 491
>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
blast fungus gypsy retroelement (fragment), partial (14%)
Length = 1708
Score = 58.9 bits (141), Expect = 2e-08
Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 7/186 (3%)
Frame = +2
Query: 1474 HDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYAKGCQDCQRHAGIQHVPASELHSII 1533
HD H I+ R+ +WP + + + C C G H+ +
Sbjct: 194 HDSTAAGHPGRNGTLEIVSRK-FFWPGQSQTVRRFVRNCDVC----GGIHIWRQAKRGFL 358
Query: 1534 KPWPFRG-----WALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVID-F 1587
KP P ++D I + P R +Y+ V +D +K V + + + F
Sbjct: 359 KPLPVPNRLHSDLSMDFITSLPPTRGRGSQYLWVIVDRLSKSVTLEEMDTMEAEACAQRF 538
Query: 1588 IQNHIVYRF-GLPESLTTDQGTVFVGQKVASFTESWGIKLLTSTPYYAQANGQVEAANKT 1646
+ H YRF G+P+S+ +D+G+ +VG+ F G+ L ST Y+ Q +G E N+
Sbjct: 539 LSCH--YRFHGMPQSIVSDRGSNWVGRFWREFCRLTGVTQLLSTSYHPQTDGGTERWNQE 712
Query: 1647 LISLIK 1652
+ ++++
Sbjct: 713 IQAVLR 730
>AL367832 weakly similar to GP|14091845|gb Putative retroelement {Oryza
sativa}, partial (2%)
Length = 384
Score = 58.2 bits (139), Expect = 3e-08
Identities = 25/58 (43%), Positives = 39/58 (67%)
Frame = -1
Query: 809 LPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNG 866
+P K + PV+ RR HPD+ +KIK E+++ + F+ T Y +W+AN+VPV KK+G
Sbjct: 174 IPTKPECPPVR*KLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDG 1
>BG644720
Length = 678
Score = 44.7 bits (104), Expect(2) = 2e-06
Identities = 44/154 (28%), Positives = 70/154 (44%), Gaps = 11/154 (7%)
Frame = -3
Query: 1415 WRKPIVDY------LQNPVGTTDRKTKY--RAMSYVIMGNE-LFKKNVDGTLLKCLSDDD 1465
WR+PI+ Y L+NP R++ Y R ++ NE L+ +G LL CL +++
Sbjct: 463 WRQPIIIYMCYGIFLENP-----RRSTYIRRHTPHLH*YNETLYI*LFEGVLL*CLGEEE 299
Query: 1466 ALIAISAVHDGLCGAHQAGIKMKWILFRQGMYWPT--IMKDCMEYAKGCQDCQRHAGIQH 1523
+ A H +CG+H++ K+ + + R G YW T ++K + A
Sbjct: 298 TIQAFQ*AHSRVCGSHKS--KLYFHIKRMGYYWNT*IMLKGAL-----------LANFIQ 158
Query: 1524 VPASELHSIIKPWPFRGWALDLIGEINPCSSRQH 1557
P LH I F W L++ G + P SS H
Sbjct: 157 QPPEVLHPTITS*LFESWELNVFG-LFPKSSGGH 59
Score = 26.6 bits (57), Expect(2) = 2e-06
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = -1
Query: 1559 YIIVAIDYFTKWVEAIPL 1576
YI+ A+ YF KWVE + L
Sbjct: 54 YILAAVYYF*KWVEVVAL 1
>TC83629 weakly similar to GP|6692261|gb|AAF24611.1| putative RNase H
{Arabidopsis thaliana}, partial (21%)
Length = 1071
Score = 50.8 bits (120), Expect = 4e-06
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Frame = +2
Query: 1292 SNNEAEYEALISSLEILIALGARNVVVKGDSELVIKQLTKEYKCISENLAKYYTKANNLL 1351
+ AEY AL+ L+ G + V KGDSELVI Q+ +K E+L K +A L
Sbjct: 674 TKESAEYRALLLGLKHASMKGFKYVTAKGDSELVINQILDPWKIKDEHLKKLCAEALELS 853
Query: 1352 AKFDDARLGHVSRIDN----QEANELAQIASGYMVDKY 1385
F R+ H+SR N + AN + G + + +
Sbjct: 854 DNFHSFRIQHISRERNYGAVRNANRAINLTDGQVEENH 967
>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
melanogaster}, partial (20%)
Length = 192
Score = 44.7 bits (104), Expect = 3e-04
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +1
Query: 1129 IGSMLAQEDENSKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYI 1180
IG+ L+Q+DE + E I Y SR+L AE YT++E+ CL ++ ++Y+
Sbjct: 16 IGAGLSQKDEENHEHPIAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYL 171
>AW684517 similar to GP|9927273|dbj Similar to Arabidopsis thaliana
chromosome II BAC F26H6; putative retroelement pol
polyprotein, partial (1%)
Length = 488
Score = 44.3 bits (103), Expect = 4e-04
Identities = 23/48 (47%), Positives = 30/48 (61%)
Frame = +1
Query: 515 FIVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKADGFVENVQAD 562
F V+ A+Y+ LLGR WIH GAV STLHQ++ FV+N A+
Sbjct: 7 FQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK------FVKNGSAE 132
>TC91935
Length = 1144
Score = 39.7 bits (91), Expect = 0.010
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 1144 AIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKY 1178
A +YLS +L D T+YT I+KLCL ++C + Y
Sbjct: 999 AAYYLSWILKDVGTKYTHIDKLCLSFLYACNNISY 1103
>TC91086
Length = 697
Score = 38.5 bits (88), Expect = 0.022
Identities = 13/22 (59%), Positives = 21/22 (95%)
Frame = -1
Query: 845 FIRTARYVDWLANVVPVIKKNG 866
FI+T+RY+ WL+N++P+IKK+G
Sbjct: 676 FIQTSRYIKWLSNILPIIKKHG 611
>BG644740 similar to PIR|A84460|A84 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 754
Score = 36.2 bits (82), Expect = 0.11
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -1
Query: 861 VIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVD 896
V KK+G R+CID+R N T K++Y +P + + D
Sbjct: 223 VRKKDGYFRMCIDYRQFNKVTTKNKYPLPRIDNLFD 116
>TC91923 weakly similar to GP|1946369|gb|AAB63087.1| unknown protein
{Arabidopsis thaliana}, partial (14%)
Length = 1129
Score = 33.5 bits (75), Expect = 0.71
Identities = 29/118 (24%), Positives = 50/118 (41%), Gaps = 2/118 (1%)
Frame = +3
Query: 1047 KKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELKAYLSSP 1106
K ++ LL + L+ I + +SF +R + + EAE + LKA +
Sbjct: 54 KAEMSKLLEEQTHLKELIREWESRGRSFEEQIRNIQSEKIEMEAELKNGIQLLKAEIEQR 233
Query: 1107 P--VMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTMI 1162
+ + +KL N +GS+ +ED NS++ I L R LND + +
Sbjct: 234 ENNIKDLNVSLDNLKLEKDNLNVEVGSL--KEDVNSRDGRIGSLDRHLNDLHIEHVQL 401
>TC91530 similar to GP|13377502|gb|AAK20740.1 LRK33 {Triticum aestivum},
partial (14%)
Length = 722
Score = 32.3 bits (72), Expect = 1.6
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 307 LWDIKPEDNPRNEPSVASIINQLDHAIKQGTVVPPNPAKEKGKDVAE 353
LW I + NP N PS+ ++ L+ ++ +VPPNP V E
Sbjct: 377 LWCI--QWNPINRPSITVVLKMLEALEEENLIVPPNPFNSTTSRVVE 511
>BI270262 similar to PIR|T51536|T515 hypothetical protein T20K14_190 -
Arabidopsis thaliana, partial (4%)
Length = 667
Score = 32.0 bits (71), Expect = 2.1
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 422 RAIFQRPTEQMKSHLKPLFVWAKVDEKGVNKVLV 455
R+IFQ PT+ + SH L++W K NK+LV
Sbjct: 666 RSIFQYPTQHLVSHCSILYLWGAA-PKSSNKILV 568
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.325 0.140 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,668,828
Number of Sequences: 36976
Number of extensions: 756280
Number of successful extensions: 4814
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 3418
Number of HSP's successfully gapped in prelim test: 163
Number of HSP's that attempted gapping in prelim test: 1190
Number of HSP's gapped (non-prelim): 3810
length of query: 1666
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1557
effective length of database: 4,984,343
effective search space: 7760622051
effective search space used: 7760622051
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0240.1