TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0239.1
         (285 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC76617 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland co...    29  2.4
TC79042 weakly similar to GP|8885557|dbj|BAA97487.1 leucoanthocy...    28  3.1
TC87901 similar to PIR|A84751|A84751 probable SF16 protein (Heli...    27  9.0

>TC76617 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland cotton]
           {Gossypium hirsutum}, complete
          Length = 760

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +3

Query: 142 PSSFRGKEFNGLSVSPKSRRFAQKVQPMVEVHSVFPLVVGVDR-----KKLPKAAAAAVG 196
           P+ FRG +F+ L ++PK  +   + +P  E  S        ++     KKLPK   +A G
Sbjct: 54  PNFFRGSKFSIL*MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAG 233


>TC79042 weakly similar to GP|8885557|dbj|BAA97487.1 leucoanthocyanidin
           dioxygenase-like protein {Arabidopsis thaliana}, partial
           (39%)
          Length = 1665

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 17/51 (33%), Positives = 24/51 (46%), Gaps = 4/51 (7%)
 Frame = -1

Query: 202 IRNMGFVVDVARVPTVLTCERRPGDTGIKAVMRWWCGDV----ELIDWWLF 248
           I+N+ F   +  +  +L  ER  G   IKA  +  C D       IDWW+F
Sbjct: 561 IQNIYFTAPILFLILILQPERVQGRVTIKAFCKIMCQDFFQSSVPIDWWIF 409


>TC87901 similar to PIR|A84751|A84751 probable SF16 protein (Helianthus
           annuus) [imported] - Arabidopsis thaliana, partial (60%)
          Length = 1434

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +2

Query: 119 RQRKLRLTGLTEG-LSPETQRKVVPSSFRGKEFNGLS 154
           R+ K R +  ++G LSPE Q  +  +++ GKEF+GL+
Sbjct: 224 RKSKDRRSKKSKGTLSPEKQSALKLNNYTGKEFSGLA 334


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,156,872
Number of Sequences: 36976
Number of extensions: 109003
Number of successful extensions: 653
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of query: 285
length of database: 9,014,727
effective HSP length: 95
effective length of query: 190
effective length of database: 5,502,007
effective search space: 1045381330
effective search space used: 1045381330
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)