BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0238.4
(339 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC87661 similar to GP|14517356|gb|AAK62569.1 AT4g15540/dl3810w {... 550 e-157
TC82207 similar to GP|14517356|gb|AAK62569.1 AT4g15540/dl3810w {... 332 1e-91
TC80908 similar to GP|4966372|gb|AAD34703.1| ESTs gb|N38586 and ... 231 3e-61
BE124420 similar to GP|14517356|gb| AT4g15540/dl3810w {Arabidops... 115 3e-26
TC91301 similar to GP|19310721|gb|AAL85091.1 unknown protein {Ar... 38 0.006
TC78375 similar to GP|7208775|emb|CAB76910.1 hypothetical protei... 36 0.024
TC83912 similar to PIR|T47641|T47641 hypothetical protein T15C9.... 35 0.041
BI266305 similar to GP|10176943|dbj gene_id:K20J1.7~unknown prot... 34 0.071
CA858495 34 0.092
BQ751207 weakly similar to GP|604427|gb|AA ACOB protein {Emerice... 34 0.092
TC80679 phosphatase-like protein Mtc923 [Medicago truncatula] 34 0.092
TC85910 homologue to SP|P08926|RUBA_PEA RuBisCO subunit binding-... 33 0.16
TC93234 weakly similar to GP|21751020|dbj|BAC03887. unnamed prot... 33 0.21
AW774261 weakly similar to EGAD|146423|156 vitellogenin {Anolis ... 33 0.21
TC77503 weakly similar to GP|16930417|gb|AAL31894.1 At2g24420/T2... 33 0.21
TC76653 similar to GP|9757973|dbj|BAB08309.1 contains similarity... 32 0.27
TC81897 similar to GP|10178104|dbj|BAB11397. contains similarity... 32 0.35
TC84279 weakly similar to GP|1799947|dbj|BAA16433.1 BENZENE 1 2-... 32 0.46
TC79633 weakly similar to GP|15450978|gb|AAK96760.1 putative pro... 32 0.46
TC82232 similar to GP|10177316|dbj|BAB10642. kinesin-like protei... 31 0.60
>TC87661 similar to GP|14517356|gb|AAK62569.1 AT4g15540/dl3810w {Arabidopsis
thaliana}, partial (58%)
Length = 1258
Score = 550 bits (1417), Expect = e-157
Identities = 283/344 (82%), Positives = 314/344 (91%), Gaps = 5/344 (1%)
Frame = +3
Query: 1 MAAESGDLNFDLPDDLVQVLPSDPFEQLDLARKITSIALSARVNALESESSELRARIAEK 60
M AESG LNFDLP+D++QVLPSDPFEQLD+ARKITSIALS RV ALE ESSELRA+ AEK
Sbjct: 21 MTAESGGLNFDLPEDVMQVLPSDPFEQLDVARKITSIALSTRVKALELESSELRAKTAEK 200
Query: 61 DHLIAELQSQLDSLDATLSATADNLHRAEQDKESLINENASLSNTVRKLNRDVSKLEVFR 120
D LIAELQSQL+SLD +LS TADNL RAEQDKE+L+ ENASLSNTVRKLNRDVSKLEVFR
Sbjct: 201 DELIAELQSQLESLDVSLSQTADNLVRAEQDKENLLKENASLSNTVRKLNRDVSKLEVFR 380
Query: 121 KTLMRSLQEEDDNSGGAPDMVAKVQSQSSLTSTSQFGDNEASLPPSVSSSVPSISDTGNS 180
KTLM+SLQE++DNSGGAPD+VA++QSQSSLTSTSQ+GDN AS PS+SSS+P +SD+ NS
Sbjct: 381 KTLMQSLQEDEDNSGGAPDIVARIQSQSSLTSTSQYGDNGASFQPSISSSMPHVSDSENS 560
Query: 181 FAEDHESDAIRPRVPYSLLLASQSTTPRLTPPGSPPSLSASVSPTRTSKPVSPRRHSISF 240
+AED ESD IRPRVPY+LL+ASQ TTP +TP GSPPSLSASVSPTRTS+P+SPRRHSISF
Sbjct: 561 YAEDQESDDIRPRVPYNLLVASQRTTPLITPTGSPPSLSASVSPTRTSRPMSPRRHSISF 740
Query: 241 ATSRGMHDDRTSVFS-----SMSSSDSGAGSQTGRTRVDGKEFFRQVRNRLSYEQFGAFL 295
+TSRG HDDR+SVFS S+SSSDS GSQ+GRTRVDGKEFFRQVRNRLSYEQFGAFL
Sbjct: 741 STSRGTHDDRSSVFSSIGHGSISSSDSVTGSQSGRTRVDGKEFFRQVRNRLSYEQFGAFL 920
Query: 296 ANVKELNSHKQTREVTLQKADEIFGPENKDLYNIFEGLITRNVH 339
ANVKELNSHKQTREVTLQKADEIFGPENKDLY +FEGLITRNVH
Sbjct: 921 ANVKELNSHKQTREVTLQKADEIFGPENKDLYTVFEGLITRNVH 1052
>TC82207 similar to GP|14517356|gb|AAK62569.1 AT4g15540/dl3810w {Arabidopsis
thaliana}, partial (50%)
Length = 990
Score = 332 bits (851), Expect = 1e-91
Identities = 185/303 (61%), Positives = 228/303 (75%), Gaps = 10/303 (3%)
Frame = +1
Query: 1 MAAESGDLNFDLPDDLVQVLPSDPFEQLDLARKITSIALSARVNALESESSELRARIAEK 60
+ AE N D+P++L+QVLPSDPFEQLD+ARKITSIALS RVN L+SE S LR + +K
Sbjct: 106 LVAELSGSNLDIPEELLQVLPSDPFEQLDVARKITSIALSTRVNTLQSEVSALRDELVKK 285
Query: 61 DHLIAELQSQLDSLDATLSATADNLHRAEQDKESLINENASLSNTVRKLNRDVSKLEVFR 120
D LIAEL++Q + L A LS AD L AEQDKE L+ ENASLS+TVRKL+RDVSKLEVFR
Sbjct: 286 DELIAELEAQGEPLHAALSEAADKLALAEQDKEKLLKENASLSSTVRKLSRDVSKLEVFR 465
Query: 121 KTLMRSLQEEDDNSGG-APDMVAKVQSQSSLTSTSQFGDNEASLPPSVSSSVPSISDTGN 179
K LM+SLQE+++ G +P++ A + SQSS TSTSQ GD +ASLPP SS + SD GN
Sbjct: 466 KALMQSLQEDEEKPGAVSPNIAAMLHSQSSTTSTSQLGDEDASLPPRPSSMQTNTSDAGN 645
Query: 180 SFAEDHESDA------IRPRV---PYSLLLASQSTTPRLTPPGSPPSLSASVSPTRTSKP 230
S+AED +SDA +R + +++LLASQ+TTPR++PPGSPP +SASVSP+RTSKP
Sbjct: 646 SYAEDRQSDAGPGPGPVRSQASSSSHNILLASQTTTPRISPPGSPPIVSASVSPSRTSKP 825
Query: 231 VSPRRHSISFATSRGMHDDRTSVFSSMSSSDSGAGSQTGRTRVDGKEFFRQVRNRLSYEQ 290
SPRRH++S + DRTS S SS+ S + S T RTRVDGKEFFRQVR+RLSYEQ
Sbjct: 826 ASPRRHAVS------LQIDRTS--SMFSSTGSMSSSGTARTRVDGKEFFRQVRSRLSYEQ 981
Query: 291 FGA 293
FGA
Sbjct: 982 FGA 990
>TC80908 similar to GP|4966372|gb|AAD34703.1| ESTs gb|N38586 and gb|N38613
come from this gene. {Arabidopsis thaliana}, partial
(81%)
Length = 1442
Score = 231 bits (589), Expect = 3e-61
Identities = 145/352 (41%), Positives = 205/352 (58%), Gaps = 15/352 (4%)
Frame = +3
Query: 2 AAESGDLNFDLPDDLVQVLPSDPFEQLDLARKITSIALSARVNALESESSELRARIAEKD 61
++ + ++FDLPD+++ V+P+DP+ QLDLARKITS+A+++RV++LES++ LR ++ EKD
Sbjct: 132 SSNNNAVDFDLPDEILAVIPTDPYHQLDLARKITSMAIASRVSSLESDTGRLRQKLLEKD 311
Query: 62 HLIAELQSQLDSLDATLSATADNLHRAEQDKESLINENASLSNTVRKLNRDVSKLEVFRK 121
+I EL+ ++ +L L+ A ++ L E L+ TV+KL+RD +KLE F+K
Sbjct: 312 RVINELEDRVSTLTRASQQAHSALNNAVEENVKLTKERDELAATVKKLSRDFAKLETFKK 491
Query: 122 TLMRSLQEEDDNSGGAPDMVAKVQSQSSLTSTSQFGDNEASLPPSVSSSVPSISDTGNSF 181
LMRSL DDN A + + Q+ G + +S +D G +
Sbjct: 492 QLMRSLA--DDNPPQAETIDIRTCDQAVPKDDDVNGY-------TTHNSYRGSADVGKTI 644
Query: 182 AEDHESDAIRPRVPYSLLLASQSTTPRLTPP------GSPPSLSASVSPTRTSKPVSPRR 235
E PR + TPRLTP GSP SA+VSP +TS SP +
Sbjct: 645 DE-------APRYSGQKFSLTPYITPRLTPTATPKTAGSPRGYSAAVSPNQTSGATSPSK 803
Query: 236 HSISFATSRGMHDDRTSVFSSMSSSDSGAGSQT--------GRT-RVDGKEFFRQVRNRL 286
S +D R+S+ S SS + + + GRT ++DGKEFFRQ R+RL
Sbjct: 804 VS---------YDGRSSLSSWYPSSQQSSAANSPPRGRSIPGRTPKIDGKEFFRQARSRL 956
Query: 287 SYEQFGAFLANVKELNSHKQTREVTLQKADEIFGPENKDLYNIFEGLITRNV 338
SYEQF AFLAN+KELN+ KQTRE TL+KADEIFG +NKDLY F+GL+ RNV
Sbjct: 957 SYEQFSAFLANIKELNAQKQTREETLRKADEIFGSDNKDLYLSFQGLLNRNV 1112
>BE124420 similar to GP|14517356|gb| AT4g15540/dl3810w {Arabidopsis
thaliana}, partial (16%)
Length = 360
Score = 115 bits (287), Expect = 3e-26
Identities = 55/58 (94%), Positives = 56/58 (95%)
Frame = +1
Query: 282 VRNRLSYEQFGAFLANVKELNSHKQTREVTLQKADEIFGPENKDLYNIFEGLITRNVH 339
+RNRLSYEQFGAFLANVKELNSHKQTREVTLQKADEIFGPENKDLY FEGLITRNVH
Sbjct: 145 IRNRLSYEQFGAFLANVKELNSHKQTREVTLQKADEIFGPENKDLYTAFEGLITRNVH 318
>TC91301 similar to GP|19310721|gb|AAL85091.1 unknown protein {Arabidopsis
thaliana}, partial (66%)
Length = 693
Score = 37.7 bits (86), Expect = 0.006
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +3
Query: 151 TSTSQFGDNEASLPPSVSSSVPSISDTGNSFAEDHESDAIRP-RVPYSLLLASQSTTPRL 209
T+TS + S+ ++ S S +GN+ + + + P P+ L L S S +P
Sbjct: 174 TTTSSLNKSLPKKSQSLYATGLSFSRSGNTPSPFSSTSPLPPLSSPFFLTLLSPSPSPSP 353
Query: 210 TPPGSPPSLSASVS----PTRTSKPVSPRRHSISFA 241
TPP SPP LS +S PT + + P S +FA
Sbjct: 354 TPPPSPPPLSLLLSLVNNPTSLALSLVPLSSSSAFA 461
>TC78375 similar to GP|7208775|emb|CAB76910.1 hypothetical protein {Cicer
arietinum}, partial (42%)
Length = 1676
Score = 35.8 bits (81), Expect = 0.024
Identities = 44/206 (21%), Positives = 81/206 (38%), Gaps = 6/206 (2%)
Frame = +2
Query: 64 IAELQSQLDSLDATLSATADNLHRAEQDKESLINENASLSNTVRKLNRDVSKLEVFRKTL 123
I ++ +D ++A T N++ ++D E +++ D++K + +T+
Sbjct: 623 IIGVEKHIDQIEAIADDTQKNINAIQRDTE--------------EIDGDINKFRIIIRTI 760
Query: 124 MRSLQEEDDNSGGAPDMVAKV---QSQSSLTSTSQFGDNEASLPPSVSSSVPSISDTGNS 180
+ + N D V + +ST Q+ +S+P + +PS+S + +
Sbjct: 761 EDKITLIEGNQVATNDKVKGMCLFTESLQNSSTPQYIQGSSSMP---AIELPSVSPSSRA 931
Query: 181 FAEDHESDAIRPRVPYSLLLASQSTTPRLTPPGSPPSLSASVSPTRTSKPVSPRRHSISF 240
P L L S TP S + SV PTR++ P SP S
Sbjct: 932 LQSG----------PSRLYLEQPSITPI--------SRTGSVPPTRSADPPSPSNTVGSD 1057
Query: 241 ATSRGMHDDR---TSVFSSMSSSDSG 263
S + D+R +S SM + +G
Sbjct: 1058QESSPISDERDFSSSRVDSMKTPPAG 1135
>TC83912 similar to PIR|T47641|T47641 hypothetical protein T15C9.20 -
Arabidopsis thaliana, partial (13%)
Length = 814
Score = 35.0 bits (79), Expect = 0.041
Identities = 35/144 (24%), Positives = 58/144 (39%), Gaps = 2/144 (1%)
Frame = +3
Query: 39 LSARVNALESESSELRARIAEKDHLIAELQSQLDSLDATLSATADNLHRAEQDKESLINE 98
LSA+V LE E +ELR +++K + L ++ T D AEQD +
Sbjct: 9 LSAKVERLEEEVAELRQALSDKQEQETAMLQVLMRVEQEQKVTEDARRFAEQDATA---- 176
Query: 99 NASLSNTVRKLNRDVSKLEVFRKTLMRSLQEEDDNSGGAPDMVAK--VQSQSSLTSTSQF 156
++ + LQE+ + + A + K V ++S L +T Q+
Sbjct: 177 ---------------------QRYASQVLQEKYEEASVALAEMEKRAVMAESMLEATLQY 293
Query: 157 GDNEASLPPSVSSSVPSISDTGNS 180
+ L PS SS P + N+
Sbjct: 294 QSGQTKLQPSPRSSQPESPGSRNN 365
>BI266305 similar to GP|10176943|dbj gene_id:K20J1.7~unknown protein
{Arabidopsis thaliana}, partial (11%)
Length = 485
Score = 34.3 bits (77), Expect = 0.071
Identities = 28/95 (29%), Positives = 42/95 (43%), Gaps = 5/95 (5%)
Frame = +2
Query: 146 SQSSLTSTSQFGDNEASLPPSVSSSVPSISDTGNSFAEDHESDAIRPRVPYSLLLASQST 205
S SS S+S +LP S SSS+ SI S DH S R R+P+ L +
Sbjct: 149 SSSSSLSSSPPSFRSQTLPSSSSSSLSSIIVPQTSTKHDHHS---RSRIPFLLPKKNNKN 319
Query: 206 TPRLT-----PPGSPPSLSASVSPTRTSKPVSPRR 235
P + P S ++++ + R+ +PRR
Sbjct: 320 KPSSSINMNMKPSSSANVTSDIVFKRSKSTATPRR 424
>CA858495
Length = 763
Score = 33.9 bits (76), Expect = 0.092
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 31/148 (20%)
Frame = +3
Query: 39 LSARVNALESESSELRARIAEKDHLIAELQSQLDSL-----------------DATLSAT 81
L ++N LES S + + IA+LQS+ +SL LS
Sbjct: 246 LEQKLNILESNLSSFSEKETGLEMRIAQLQSETNSLLQKETGFVEKTNQLLNEKNILSLK 425
Query: 82 ADNLHR----AEQDKESLINENASLSNTVRKLNRDVS-------KLEVFRKTLM---RSL 127
D+L R AE D S + + S + LN +S +LE + L+ + L
Sbjct: 426 VDSLERKIIHAESDLSSFVEKENSTEEVISNLNGSISMLQGQVAELEESKNNLLLENQQL 605
Query: 128 QEEDDNSGGAPDMVAKVQSQSSLTSTSQ 155
+E +S + D AK ++ + SQ
Sbjct: 606 RENSSSSSASQDASAKDRASENEELKSQ 689
>BQ751207 weakly similar to GP|604427|gb|AA ACOB protein {Emericella
nidulans}, partial (12%)
Length = 758
Score = 33.9 bits (76), Expect = 0.092
Identities = 34/118 (28%), Positives = 54/118 (44%), Gaps = 2/118 (1%)
Frame = +1
Query: 145 QSQSSLTSTSQFGDNEASLPPSVSSSVPSISDTGNSFAEDHESDAIRPRVPYSLLLASQS 204
Q+ S ++S+ + S PP+ + + PS +SF+ + I P P + S S
Sbjct: 145 QTPMSSQNSSKPLRSRPSPPPTFTPTSPS-----SSFSLTAHTPTISPPPPPPPAITSPS 309
Query: 205 TTPRL--TPPGSPPSLSASVSPTRTSKPVSPRRHSISFATSRGMHDDRTSVFSSMSSS 260
+TP + SP LS + +PT + P SP A SR +++ SSM SS
Sbjct: 310 STPPRPSSSANSPS*LSLTPAPTSPTPPYSPPSTYRRPAFSRTSSSPQSTPASSMPSS 483
>TC80679 phosphatase-like protein Mtc923 [Medicago truncatula]
Length = 1390
Score = 33.9 bits (76), Expect = 0.092
Identities = 24/84 (28%), Positives = 38/84 (44%)
Frame = +1
Query: 152 STSQFGDNEASLPPSVSSSVPSISDTGNSFAEDHESDAIRPRVPYSLLLASQSTTPRLTP 211
+ S F DN+ +LP + ++++P ++D + P S S +P P
Sbjct: 154 AVSSFLDNDTTLPLNDTATLP-------------QNDTVSP---------SDSLSPDFHP 267
Query: 212 PGSPPSLSASVSPTRTSKPVSPRR 235
SPPS S S SP+R + RR
Sbjct: 268 DDSPPSQSPSQSPSRAPYELRSRR 339
>TC85910 homologue to SP|P08926|RUBA_PEA RuBisCO subunit binding-protein alpha
subunit chloroplast precursor, complete
Length = 1997
Score = 33.1 bits (74), Expect = 0.16
Identities = 21/59 (35%), Positives = 31/59 (51%)
Frame = +3
Query: 15 DLVQVLPSDPFEQLDLARKITSIALSARVNALESESSELRARIAEKDHLIAELQSQLDS 73
DL ++ S EQL LARK+T S + A + EL++R+A+ + E S DS
Sbjct: 1131 DLGLLVESTSIEQLGLARKVTISKDSTTIIADAASKDELQSRVAQLKKELFETDSVYDS 1307
>TC93234 weakly similar to GP|21751020|dbj|BAC03887. unnamed protein product
{Homo sapiens}, partial (11%)
Length = 591
Score = 32.7 bits (73), Expect = 0.21
Identities = 40/135 (29%), Positives = 51/135 (37%), Gaps = 10/135 (7%)
Frame = +2
Query: 146 SQSSLTSTSQFGDNEASLPPSVSSSVPSISDTGNSFAEDHESDAIRPRVPYSLLLASQST 205
+ +SLTS+S + S SS P + TG + S A P P S + ST
Sbjct: 161 ASASLTSSSSIPSQRSRTSRSPSSR-PRHTSTGTAPPFAVSSPASSPTTPSSTRSSPGST 337
Query: 206 -TPRLT--------PPGSPPSLSASVSPTRTSKPVS-PRRHSISFATSRGMHDDRTSVFS 255
TPR PP +PP PT+ S P S P S TS + R S +
Sbjct: 338 STPRTPSTSFSARPPPSTPPPTPFRSRPTKGSSPSSTPSSSSPPAPTSPAISPSRPSAPT 517
Query: 256 SMSSSDSGAGSQTGR 270
S A S R
Sbjct: 518 RRPSPPGTACSPRSR 562
>AW774261 weakly similar to EGAD|146423|156 vitellogenin {Anolis pulchellus},
partial (40%)
Length = 495
Score = 32.7 bits (73), Expect = 0.21
Identities = 24/76 (31%), Positives = 38/76 (49%), Gaps = 5/76 (6%)
Frame = -2
Query: 196 YSLLLASQSTTPRLTPPGSPPSLSASVSPTR-----TSKPVSPRRHSISFATSRGMHDDR 250
+ ++ +S +++ + S S S+S S T TS S +SIS +S G
Sbjct: 476 FCMVSSSSTSSSSFSYSSSSSSASSSFSSTSSSISSTSSSSSTSSYSISSISSSGSFSSS 297
Query: 251 TSVFSSMSSSDSGAGS 266
S+FSS S+ SG+GS
Sbjct: 296 RSIFSSDSTVFSGSGS 249
>TC77503 weakly similar to GP|16930417|gb|AAL31894.1 At2g24420/T28I24.15
{Arabidopsis thaliana}, partial (54%)
Length = 1787
Score = 32.7 bits (73), Expect = 0.21
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = +2
Query: 31 ARKITSIALSARVNALESESSELRARIAEKDHLIAE----LQSQLDSLDATLSATADNLH 86
A KI L++++ +LES+ SE + +KD +IAE Q +L S+ + + A
Sbjct: 212 ALKIQLDQLNSKIQSLESQISEKTQELKKKDQVIAEKEKLFQDKLSSIQSLQNEVASLQK 391
Query: 87 RAEQDKESLINENASLSNTVRKLNRDVSKLE 117
+ D E + + + + +L + V KL+
Sbjct: 392 KGSLDAEEQVGKAYARAG---ELQKQVDKLK 475
>TC76653 similar to GP|9757973|dbj|BAB08309.1 contains similarity to
chromosome condensation protein~gene_id:K12B20.9
{Arabidopsis thaliana}, partial (1%)
Length = 750
Score = 32.3 bits (72), Expect = 0.27
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Frame = -3
Query: 190 IRPRVPYSLLLASQSTTPRLT-PPGSPPSLSASVSPTRT--SKPVSP----------RRH 236
I P V LL A +S LT PP SP LSA S T+T S +P +
Sbjct: 646 ISPPVQQPLLSAGESLIETLTSPPLSPTLLSAGESLTKTLSSHSTTPTSSISSLTFVSSN 467
Query: 237 SISFATSRGMHDDRTSVFSSMSS 259
S++F+ R +DRT + S ++
Sbjct: 466 SVTFSLGRTSEEDRTFIASQAAA 398
>TC81897 similar to GP|10178104|dbj|BAB11397. contains similarity to unknown
protein~gb|AAF23194.1~gene_id:F15M7.1 {Arabidopsis
thaliana}, partial (56%)
Length = 501
Score = 32.0 bits (71), Expect = 0.35
Identities = 17/54 (31%), Positives = 26/54 (47%)
Frame = -2
Query: 201 ASQSTTPRLTPPGSPPSLSASVSPTRTSKPVSPRRHSISFATSRGMHDDRTSVF 254
+S+ST P PG +++ SPT + SP+R +S T +D S F
Sbjct: 482 SSESTNPGGVNPGKTCECASTESPTEIGQDDSPQRSLVSLYTCHPKYDTSISTF 321
>TC84279 weakly similar to GP|1799947|dbj|BAA16433.1 BENZENE 1 2-DIOXYGENASE
ALPHA SUBUNIT (EC 1.14.12.3). {Escherichia coli},
partial (24%)
Length = 831
Score = 31.6 bits (70), Expect = 0.46
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Frame = +3
Query: 148 SSLTSTSQFGDNEASLPPSVSSSVPSISDTGNSFAEDHESDAIRPRVPYSLLLASQSTTP 207
+S ST+ G + P S +++ + S ++ A S A PR P + ST+P
Sbjct: 333 ASTRSTTSAGTGPS--PSSRATAATASSSPASTTAGPTASAATWPRPP-GTRTSRASTSP 503
Query: 208 RL----TPPGSPPSLSASVSPTRTSKPVSPRRHSISFATSRGMHDDRTSVFSSMSSSDSG 263
R + S P+ S+ + T +P SP +++ +TSR T +++++
Sbjct: 504 RTASFPSTSTSTPTASSGSTWTPPRRPRSPGTTTLTASTSRSASSTTTLTTTTLTTRGRW 683
Query: 264 AGSQTGRT 271
TGR+
Sbjct: 684 RADTTGRS 707
>TC79633 weakly similar to GP|15450978|gb|AAK96760.1 putative protein
{Arabidopsis thaliana}, partial (78%)
Length = 1054
Score = 31.6 bits (70), Expect = 0.46
Identities = 32/108 (29%), Positives = 47/108 (42%), Gaps = 3/108 (2%)
Frame = +3
Query: 164 PPSVSSSVPSISDTGNSFAEDHESDAIRPRVPYSLLLASQSTTP---RLTPPGSPPSLSA 220
PPS SSS S++ + + +A+ + + ST P L P PPS+SA
Sbjct: 198 PPSASSSTTSLNHSATA-----SHNAVHGQ--------NSSTAPPSANLNPSPMPPSVSA 338
Query: 221 SVSPTRTSKPVSPRRHSISFATSRGMHDDRTSVFSSMSSSDSGAGSQT 268
+PT S +P S + S +H S+ SS S+S S T
Sbjct: 339 KTTPTSVS-TTTPSLPESSLSLSSPIH----SLSSSSSASSLHGPSST 467
>TC82232 similar to GP|10177316|dbj|BAB10642. kinesin-like protein
{Arabidopsis thaliana}, partial (21%)
Length = 1181
Score = 31.2 bits (69), Expect = 0.60
Identities = 24/90 (26%), Positives = 40/90 (43%), Gaps = 7/90 (7%)
Frame = +3
Query: 42 RVNALESESSELRARIAEKDHLIAELQS-------QLDSLDATLSATADNLHRAEQDKES 94
++NALES+ SEL+ + + HL+ + Q D + S H+ +Q+ E
Sbjct: 417 KLNALESQVSELKKKQDAQAHLLRQKQKGDEAAKRLQDEIQRIKSQKVQLQHKIKQESEQ 596
Query: 95 LINENASLSNTVRKLNRDVSKLEVFRKTLM 124
AS V +L ++ K E R L+
Sbjct: 597 FRLWKASREKEVLQLKKEGRKNEYERHKLL 686
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.309 0.125 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,658,829
Number of Sequences: 36976
Number of extensions: 99404
Number of successful extensions: 1066
Number of sequences better than 10.0: 121
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of query: 339
length of database: 9,014,727
effective HSP length: 97
effective length of query: 242
effective length of database: 5,428,055
effective search space: 1313589310
effective search space used: 1313589310
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0238.4