TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0237.3
         (508 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC86453 similar to PIR|D96614|D96614 hypothetical protein T18I24...    29  4.9
TC86808 homologue to SP|Q9ZTR1|SPD1_PEA Spermidine synthase 1 (E...    29  4.9
BG581317 homologue to OMNI|NTL01EC003 IS2 hypothetical protein {...    28  6.4
TC76418 similar to GP|16226228|gb|AAL16109.1 At1g20110/T20H2_10 ...    28  6.4
BG453710 weakly similar to GP|21537057|gb| unknown {Arabidopsis ...    28  8.3

>TC86453 similar to PIR|D96614|D96614 hypothetical protein T18I24.3
           [imported] - Arabidopsis thaliana, partial (42%)
          Length = 1852

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 17/57 (29%), Positives = 26/57 (44%), Gaps = 1/57 (1%)
 Frame = +1

Query: 66  RPNSLPEEHESFHPSVRGEELILAFQPSYRMPFLNDPKRAFRSAPPNPSANDK-AYL 121
           +P + P E  S H     E  ++  QPS+    LN+P    R      S++D  AY+
Sbjct: 385 KPVNKPREGNSHHQRTSSESHLIEEQPSWLDDLLNEPDTPVRRGGHRRSSSDSFAYI 555


>TC86808 homologue to SP|Q9ZTR1|SPD1_PEA Spermidine synthase 1 (EC 2.5.1.16)
           (Putrescine aminopropyltransferase 1) (SPDSY 1). [Garden
           pea], partial (93%)
          Length = 1350

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 461 PGAVKRAYAFDTTVHFYNKRLLNLSPFTYAPSYYATNAFKA 501
           PG + RA+ +  T+H+     +++ P+T+  S Y T+  K+
Sbjct: 879 PGIIDRAFEYLATIHYDVLDDMHMKPYTFCLSAYNTSWTKS 757


>BG581317 homologue to OMNI|NTL01EC003 IS2 hypothetical protein {Escherichia
           coli K12-MG1655}, partial (55%)
          Length = 808

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 2/52 (3%)
 Frame = +2

Query: 67  PNSLPEEHESFHPSVRGEELILAFQPS--YRMPFLNDPKRAFRSAPPNPSAN 116
           P+ +P  + SF+P        L  QPS  Y  P+    +     APPNP+ N
Sbjct: 257 PDHVPSSNPSFNPPPFESSNPLYQQPSQPYYPPYDQQHQTPLNYAPPNPNPN 412


>TC76418 similar to GP|16226228|gb|AAL16109.1 At1g20110/T20H2_10
           {Arabidopsis thaliana}, partial (54%)
          Length = 2020

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 2/52 (3%)
 Frame = +3

Query: 67  PNSLPEEHESFHPSVRGEELILAFQPS--YRMPFLNDPKRAFRSAPPNPSAN 116
           P+ +P  + SF+P        L  QPS  Y  P+    +     APPNP+ N
Sbjct: 213 PDHVPSSNPSFNPPPFESSNPLYQQPSQPYYPPYDQQHQTPLNYAPPNPNPN 368


>BG453710 weakly similar to GP|21537057|gb| unknown {Arabidopsis thaliana},
           partial (6%)
          Length = 651

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 154 NPAMLLSALYFWERSTNCLHVPFGMITPTLLDV 186
           +P+M+ +    W   T+  H+P G +T TL DV
Sbjct: 474 DPSMIRAMCERWHTETSSFHLPMGEMTITLDDV 376


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,390,141
Number of Sequences: 36976
Number of extensions: 249040
Number of successful extensions: 1210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of query: 508
length of database: 9,014,727
effective HSP length: 100
effective length of query: 408
effective length of database: 5,317,127
effective search space: 2169387816
effective search space used: 2169387816
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)