BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0234.16
(747 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86766 weakly similar to PIR|T06291|T06291 extensin homolog T9E... 49 9e-06
TC80766 similar to GP|15292967|gb|AAK93594.1 unknown protein {Ar... 40 0.003
TC87806 similar to GP|21592931|gb|AAM64881.1 phosphoserine amino... 40 0.004
AJ502894 weakly similar to SP|P38665|RL24 60S ribosomal protein ... 39 0.006
TC87201 similar to PIR|F86388|F86388 hypothetical protein AAG292... 39 0.006
BQ141932 weakly similar to GP|6523547|emb hydroxyproline-rich gl... 39 0.010
TC83149 similar to GP|13561982|gb|AAK30594.1 flagelliform silk p... 38 0.012
BQ144077 weakly similar to GP|6523547|emb| hydroxyproline-rich g... 38 0.012
TC81629 similar to GP|15081654|gb|AAK82482.1 AT4g26750/F10M23_90... 37 0.021
TC81272 similar to PIR|T05225|T05225 extensin homolog F17I5.160 ... 37 0.021
TC76989 homologue to SP|O24310|EFTU_PEA Elongation factor Tu ch... 37 0.021
TC85251 homologue to PIR|JQ2128|JQ2128 metallothionein - soybean... 37 0.028
TC78495 homologue to PIR|S53504|S53504 extensin-like protein S3 ... 37 0.028
TC88911 weakly similar to GP|13926280|gb|AAK49610.1 AT5g14920/F2... 37 0.028
AJ499220 similar to SP|Q09863|YAF Hypothetical protein C29E6.10c... 37 0.036
TC77925 similar to GP|18700163|gb|AAL77693.1 AT4g02720/T10P11_1 ... 37 0.036
TC91930 weakly similar to GP|6691123|gb|AAF24496.1| FH protein N... 36 0.047
TC89754 similar to GP|21618273|gb|AAM67323.1 unknown {Arabidopsi... 36 0.047
TC76721 homologue to GP|8132441|gb|AAF73291.1| extensin {Pisum s... 36 0.062
BQ141541 similar to GP|334068|gb|A ORF2 {Pseudorabies virus}, pa... 36 0.062
>TC86766 weakly similar to PIR|T06291|T06291 extensin homolog T9E8.80 -
Arabidopsis thaliana, partial (18%)
Length = 1260
Score = 48.5 bits (114), Expect = 9e-06
Identities = 38/131 (29%), Positives = 51/131 (38%), Gaps = 4/131 (3%)
Frame = +2
Query: 317 PLTPIPESQPAAQTTSPP--HSPRSSFFQPSPNEAPLWNNFRTNPPDPLIQPHP--SPSK 372
P +P P P PP HSP + P P P PP P ++P P SP+
Sbjct: 179 PHSPTPPVYPYLSPPPPPPVHSPPPPVYSPPPPSPPPCVEPPPPPPPPCVEPPPPSSPAP 358
Query: 373 HQNVWLPELLIQTLPQPIHLYPSQLMLLTLLPPITLNPLENSWRSEKEKVSTLEEYYLTC 432
HQ + P P P++ YPS PP+ +P + + S Y +
Sbjct: 359 HQTPYHPPPSPSPPPSPVYAYPSP------PPPVYTSPPPSPVYAYP---SPPPPVYSSP 511
Query: 433 PSPRRYPGPRP 443
P P Y GP P
Sbjct: 512 PPPPVYEGPIP 544
Score = 36.2 bits (82), Expect = 0.047
Identities = 49/194 (25%), Positives = 59/194 (30%), Gaps = 3/194 (1%)
Frame = +2
Query: 316 NPLTPIP---ESQPAAQTTSPPHSPRSSFFQPSPNEAPLWNNFRTNPPDPLIQPHPSPSK 372
+P P+P S P SPP P S P P +P T P P + P P P
Sbjct: 86 SPPPPVPYYYSSPPPPPAHSPPPPPXSP---PPPPHSP------TPPVYPYLSPPPPPPV 238
Query: 373 HQNVWLPELLIQTLPQPIHLYPSQLMLLTLLPPITLNPLENSWRSEKEKVSTLEEYYLTC 432
H + P P++ P PP + P
Sbjct: 239 H-----------SPPPPVYSPPPP------SPPPCVEP---------------------- 301
Query: 433 PSPRRYPGPRPERLVDPDEPILANPLHEADPLAQQVQPAPHQQQPVQPEPEPEQSVSNHS 492
P P P V+P P PAPH Q P P P P S
Sbjct: 302 ------PPPPPPPCVEPPPP---------------SSPAPH-QTPYHPPPSPSPPPSPVY 415
Query: 493 SVRSPNPLVATSEP 506
+ SP P V TS P
Sbjct: 416 AYPSPPPPVYTSPP 457
Score = 30.8 bits (68), Expect = 2.0
Identities = 38/161 (23%), Positives = 51/161 (31%), Gaps = 2/161 (1%)
Frame = +2
Query: 322 PESQPAAQTTSPPHSPRSSFFQPSPNEAPLWNNFRTNPPDPLIQPHPSPSKHQNVWLPEL 381
P PA PP SP P+P P + + PP P + P P P
Sbjct: 122 PPPPPAHSPPPPPXSPPPPPHSPTPPVYP----YLSPPPPPPVHSPPPPVYSPPPPSPPP 289
Query: 382 LIQTLPQPIHLYPSQLMLLTLLPPITLNPLENSWRSEKEKVSTLEEYYLTCPSP-RRYPG 440
++ P P PP + P S + + PSP YP
Sbjct: 290 CVEPPPPP--------------PPPCVEPPPPSSPAPHQTPYHPPPSPSPPPSPVYAYPS 427
Query: 441 PRPERLVD-PDEPILANPLHEADPLAQQVQPAPHQQQPVQP 480
P P P P+ A P P+ P P + P+ P
Sbjct: 428 PPPPVYTSPPPSPVYAYP-SPPPPVYSSPPPPPVYEGPIPP 547
>TC80766 similar to GP|15292967|gb|AAK93594.1 unknown protein {Arabidopsis
thaliana}, partial (59%)
Length = 785
Score = 40.0 bits (92), Expect = 0.003
Identities = 25/62 (40%), Positives = 31/62 (49%)
Frame = +3
Query: 473 HQQQPVQPEPEPEQSVSNHSSVRSPNPLVATSEPHLGASEPHVQTCDIGSPQGASEAHSS 532
H QQP P P + SN SS ++P P A + P S PH QT SPQ ++H
Sbjct: 90 HHQQP-PPSPPSTTTPSNPSSSQNPPPPTAVNSPQNSKSHPHQQT----SPQ--PQSHPD 248
Query: 533 NH 534
NH
Sbjct: 249 NH 254
>TC87806 similar to GP|21592931|gb|AAM64881.1 phosphoserine aminotransferase
{Arabidopsis thaliana}, partial (58%)
Length = 1010
Score = 39.7 bits (91), Expect = 0.004
Identities = 24/67 (35%), Positives = 33/67 (48%), Gaps = 1/67 (1%)
Frame = +1
Query: 322 PESQPAAQTTSPPHSPRSSFFQPSPN-EAPLWNNFRTNPPDPLIQPHPSPSKHQNVWLPE 380
P+ + T PHSP QPSP+ PL N F++N P P +P PSP +P+
Sbjct: 55 PKPTTLSSTNPSPHSP-----QPSPSAPTPLSNPFQSNAPPPPTKPKPSPKPKP---IPQ 210
Query: 381 LLIQTLP 387
+ T P
Sbjct: 211 IASSTSP 231
Score = 30.0 bits (66), Expect = 3.4
Identities = 18/75 (24%), Positives = 31/75 (41%)
Frame = +1
Query: 430 LTCPSPRRYPGPRPERLVDPDEPILANPLHEADPLAQQVQPAPHQQQPVQPEPEPEQSVS 489
++ P P P P PL ++P P P + +P P+P+P ++
Sbjct: 46 ISSPKPTTLSSTNPSPHSPQPSPSAPTPL--SNPFQSNAPPPPTKPKP-SPKPKPIPQIA 216
Query: 490 NHSSVRSPNPLVATS 504
+ +S P P + TS
Sbjct: 217 SSTSPLDPPPSLKTS 261
Score = 30.0 bits (66), Expect = 3.4
Identities = 22/65 (33%), Positives = 29/65 (43%), Gaps = 8/65 (12%)
Frame = +2
Query: 314 SSNPLTPIPESQPAAQTTS--------PPHSPRSSFFQPSPNEAPLWNNFRTNPPDPLIQ 365
++NP +P P QP Q T PPH P FQ N+ R +PP P
Sbjct: 35 TTNP-SPPPNQQPFPQQTHHPTHLNHLPPHQPH---FQTHFNQM-----LRHHPPSPSPA 187
Query: 366 PHPSP 370
P+P+P
Sbjct: 188 PNPNP 202
>AJ502894 weakly similar to SP|P38665|RL24 60S ribosomal protein L24 (L30).
[Yeast] {Kluyveromyces lactis}, partial (84%)
Length = 501
Score = 39.3 bits (90), Expect = 0.006
Identities = 26/82 (31%), Positives = 45/82 (54%)
Frame = +2
Query: 604 IMQLLHAEGSQRIEAAKQRFARRVALHEQEQRQKLLEAIEEARRKQEQAEEAARLAAAQD 663
+ + +H +G E AK+R RR H++ EAI+ R ++ + EAAR AA++
Sbjct: 227 VYRRMHKKGITE-EVAKKR-TRRAVKHQRAIVGASWEAIKAKRNQKPEVREAARAEAARE 400
Query: 664 EQARLEAERLEAEAEARRLAPV 685
+ +AE+ + +AE +LA V
Sbjct: 401 SKENKKAEQSKRKAEKAKLAQV 466
>TC87201 similar to PIR|F86388|F86388 hypothetical protein AAG29221.1
[imported] - Arabidopsis thaliana, partial (41%)
Length = 991
Score = 39.3 bits (90), Expect = 0.006
Identities = 48/211 (22%), Positives = 76/211 (35%), Gaps = 7/211 (3%)
Frame = +1
Query: 310 LLKQSSNPLTPIPESQPAAQTTSPPHSPRSSFFQPSPNEAPLWNNFRTNPPDPLI----- 364
LL+ P P P P + +P + P P P +++ PP P +
Sbjct: 25 LLRPYVYPSPPPPSPPPPIRIQITTRAPPYVYPSPPPPSPPPPYIYKSPPPPPYVYKSPP 204
Query: 365 -QPHPSPSKHQNVWLPELLIQTLPQPIHLY-PSQLMLLTLLPPITLNPLENSWRSEKEKV 422
P+ PS P + ++ P P ++Y P + + PP P ++S
Sbjct: 205 PPPYVYPSPPPPSPPPPYIYKSPPPPPYVYTPPPYVYKSPPPPSPSPPPPYVYKSPPPPP 384
Query: 423 STLEEYYLTCPSPRRYPGPRPERLVDPDEPILANPLHEADPLAQQVQPAPHQQQPVQPEP 482
Y P P Y P P + V P ++E+ P P P+ +P+ P P
Sbjct: 385 YV---YKSPPPPPYVYESPPPPQYVYKSPP-PPPYVYESPPPPSPSPPPPYYYKPI-PPP 549
Query: 483 EPEQSVSNHSSVRSPNPLVATSEPHLGASEP 513
+S P P V S P++ S P
Sbjct: 550 YVYESPPYIYKSPPPAPYVYKSPPYVYKSPP 642
>BQ141932 weakly similar to GP|6523547|emb hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (30%)
Length = 1338
Score = 38.5 bits (88), Expect = 0.010
Identities = 37/127 (29%), Positives = 47/127 (36%), Gaps = 1/127 (0%)
Frame = -2
Query: 246 PPSPKKQKKQVRIVVKPTRVEPAAEVIRRVETPARVTRSSAQSSKSAVASDDDLNLFDAL 305
PP P + R+ R P R PA V S + S F +
Sbjct: 494 PPHPVRPPTHARL-----RSPPLRPPTLRPPPPAPVAHGHRPSPPRRIGSSTPPPPF--V 336
Query: 306 PISALLKQSSNPLTP-IPESQPAAQTTSPPHSPRSSFFQPSPNEAPLWNNFRTNPPDPLI 364
PI+ S P P +P P ++ PPH+P SSF P T+PP P
Sbjct: 335 PIAGFPPPPSPPPPPPLPLHPPPQLSSLPPHAP-SSFLLP-----------LTSPPPPPP 192
Query: 365 QPHPSPS 371
PHP PS
Sbjct: 191 PPHPPPS 171
Score = 37.0 bits (84), Expect = 0.028
Identities = 24/60 (40%), Positives = 28/60 (46%)
Frame = -1
Query: 317 PLTPIPESQPAAQTTSPPHSPRSSFFQPSPNEAPLWNNFRTNPPDPLIQPHPSPSKHQNV 376
P TP P S PA SPP PR F P PN+ + PP P P P S+HQ +
Sbjct: 294 PPTPPPSSPPAL--VSPP--PRPFLFPPPPNQPSPSPSPPPPPPLPPPPPQPPQSRHQRL 127
Score = 30.0 bits (66), Expect = 3.4
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Frame = -3
Query: 312 KQSSNPLTPIPESQPAAQTTSPPHSPRSSFFQPSPNEAPLWNNFRTNPPDPLIQPHPSPS 371
+ + +P P P S P + P H P P P+ P F P P P P
Sbjct: 586 RPTRHPPPP*PPSIPIPRHPEPTHQPHPCLPPPIPSAPPPTRAFALPPSAPPPSDLPPPP 407
Query: 372 KHQNVWLPE-LLIQTLPQPIH-LYP 394
+ V P +P P+ LYP
Sbjct: 406 RSPTVIDPRPPAASAVPLPLRPLYP 332
Score = 28.9 bits (63), Expect = 7.6
Identities = 44/178 (24%), Positives = 57/178 (31%), Gaps = 5/178 (2%)
Frame = -1
Query: 315 SNPLTPIPESQPAAQTTSPPHSPRSSFFQPSPNEAPLWNNFRTNPPDPLIQPHPSPSKHQ 374
+ P + P P ++ PP PR+ P P PP P P P P + +
Sbjct: 525 NRPTSHTPACPPPSR---PPPHPRAPSLSPPP------------PPHPPTSP-PRPGRPR 394
Query: 375 NVWLPELLIQTLPQPIHLY---PSQLMLLTLLPPITLNPLENSWRSEKEKVSTLEEYYLT 431
+ TL P H PS L +PP + P
Sbjct: 393 S--------STLAPPPHRQFHSPSALCTHCGIPPPAVPP--------------------- 301
Query: 432 CPSPRRYPGPRPERLVD-PDEPILANPLHEADPLAQQVQPAPHQQQPV-QPEPEPEQS 487
P P P P LV P P L P P P+P P+ P P+P QS
Sbjct: 300 -PPPPTPPPSSPPALVSPPPRPFLFPP----PPNQPSPSPSPPPPPPLPPPPPQPPQS 142
Score = 28.5 bits (62), Expect = 9.9
Identities = 55/264 (20%), Positives = 79/264 (29%), Gaps = 31/264 (11%)
Frame = -1
Query: 320 PIPESQPAAQTTSPPHSPRSS---------------FFQPSPNEAPLWNNFRTNPPDPLI 364
P+P + + T P SPRS+ P + R PP P
Sbjct: 966 PLPTATTHTRHTHTPLSPRSAPLHLLAPTFTTNTPPLIATRPRSTDITPTLRGQPPTPRP 787
Query: 365 QPHPSPSKHQNVWLPEL-------LIQT--LPQPIHLYPSQLMLLTLLPPITLNPLENSW 415
P P ++ P L L++ P+P H+ PS L +
Sbjct: 786 YPQPLRTRAHVGAYPRLRDAAHAVLVKAHRSPRPPHVGPS---------------LAHPA 652
Query: 416 RSEKEKVSTLEEY---YLTCPS--PRRYPGPRPERLVDPDEPILANPLHEADPLAQQVQP 470
R +V + +Y +L S P + P P P L P +P
Sbjct: 651 RPRPGRVLLVMQYPTSFLGTGSAPPAIHHHPNPPASQSP--ATLNRPTSHTPACPPPSRP 478
Query: 471 APHQQQPVQPEPEPEQSVSNHSSVRSPNPLVATSEPHLGASEPHV--QTCDIGSPQGASE 528
PH + P P P ++ P PH P C I P
Sbjct: 477 PPHPRAPSLSPPPPPHPPTSPPRPGRPRSSTLAPPPHRQFHSPSALCTHCGIPPPAVPPP 298
Query: 529 AHSSNHPASPETNLSIIPYTHLRP 552
+ P+SP +S P L P
Sbjct: 297 PPPTPPPSSPPALVSPPPRPFLFP 226
>TC83149 similar to GP|13561982|gb|AAK30594.1 flagelliform silk protein
{Argiope trifasciata}, partial (3%)
Length = 1177
Score = 38.1 bits (87), Expect = 0.012
Identities = 24/61 (39%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = +3
Query: 313 QSSNPLTPIPE---SQPAAQTTSPPHSPRSSFFQPSPNEAPLWNNFRTNPPDPLIQPHPS 369
+S PL P P P SPP RS SP PLW T PP P P PS
Sbjct: 150 RSKTPLPPPPPPLPQHPKPPQKSPPRMRRSKPSPSSPAATPLWPQRTTPPPSP-STPRPS 326
Query: 370 P 370
P
Sbjct: 327 P 329
>BQ144077 weakly similar to GP|6523547|emb| hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (16%)
Length = 463
Score = 38.1 bits (87), Expect = 0.012
Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +1
Query: 333 PPHSPRSSFFQPSPNEAPLWNNFRTNPPDPLI-QPHPSPSKHQNVWLPELLIQTLPQPIH 391
PP S RS FF SP+ P R PP P +PHP P H P PI
Sbjct: 130 PPSSFRSLFFPASPSHPP-----RAFPPPPTSPKPHPPPHPH----------PPPPMPIV 264
Query: 392 LYPSQLMLLTLLPPI 406
YP Q T+ PPI
Sbjct: 265 YYPLQ----TIRPPI 297
>TC81629 similar to GP|15081654|gb|AAK82482.1 AT4g26750/F10M23_90
{Arabidopsis thaliana}, partial (19%)
Length = 824
Score = 37.4 bits (85), Expect = 0.021
Identities = 31/124 (25%), Positives = 52/124 (41%)
Frame = +2
Query: 426 EEYYLTCPSPRRYPGPRPERLVDPDEPILANPLHEADPLAQQVQPAPHQQQPVQPEPEPE 485
+EY+ PS +P P + D P + + P +Q QP P Q +P P
Sbjct: 29 QEYHPPPPSQDYHPPPPSQ-----DYPPPPSQDYHPPPPSQDYQPPPPSQD--YHQPPPA 187
Query: 486 QSVSNHSSVRSPNPLVATSEPHLGASEPHVQTCDIGSPQGASEAHSSNHPASPETNLSII 545
+S S++S + +LG + P +T P S H ++P+ E++L +
Sbjct: 188 RSDSSYSEPYNHQQYSPDQSQNLGPNYPSHET-----PPPYSLPHFQSYPSFTESSLPSV 352
Query: 546 PYTH 549
P H
Sbjct: 353 PVNH 364
>TC81272 similar to PIR|T05225|T05225 extensin homolog F17I5.160 -
Arabidopsis thaliana, partial (3%)
Length = 757
Score = 37.4 bits (85), Expect = 0.021
Identities = 45/177 (25%), Positives = 63/177 (35%), Gaps = 11/177 (6%)
Frame = +1
Query: 312 KQSSNPLTPIPESQPAAQTTSPPHSPRSSFFQPSPNEAPLWNNFRTNPPDPLIQPHPSPS 371
+ +S P+ + S A +T P P S P P +P P P++ P P+P
Sbjct: 13 RSTSAPMASVTSSSLARRTAPSPSLPSQSAPSPCPPRSP---------PAPVVFPSPAPV 165
Query: 372 K----HQNVWLPELLIQTLPQPIHLYPSQLMLLTLLPPITLNPLENSWRSEKEKVSTLEE 427
+ LP LL L P+ PS ++ L +LP PL +
Sbjct: 166 PAVLLSLALVLPVLLSPALVLPV--LPSPVLALPVLPSPVPVPLALPSPALMPVAPLSPA 339
Query: 428 YYLTCP-SPRRY------PGPRPERLVDPDEPILANPLHEADPLAQQVQPAPHQQQP 477
L P SP P PRP L+ PD +P L+ P P P
Sbjct: 340 LVLPAPLSPALVLPVLPSPPPRPAALLIPDPAPPTSPPPAPVSLSPASAPLPSASSP 510
>TC76989 homologue to SP|O24310|EFTU_PEA Elongation factor Tu chloroplast
precursor (EF-Tu). [Garden pea] {Pisum sativum}, partial
(92%)
Length = 1907
Score = 37.4 bits (85), Expect = 0.021
Identities = 39/148 (26%), Positives = 57/148 (38%)
Frame = +1
Query: 359 PPDPLIQPHPSPSKHQNVWLPELLIQTLPQPIHLYPSQLMLLTLLPPITLNPLENSWRSE 418
PP L+ P P + ++L +L I L+ Q +LL L P NS
Sbjct: 58 PPSSLLLFIPKPKERIT---KQILFSSLS--IQLWQFQFLLL-------LPPNSNSHHPT 201
Query: 419 KEKVSTLEEYYLTCPSPRRYPGPRPERLVDPDEPILANPLHEADPLAQQVQPAPHQQQPV 478
++ P P P P P L+ P+ P L +P + P P P P+
Sbjct: 202 HHTLTP-------SPLPLPLPFPTPPPLIVPN*P*LTSPPPSSTPPQSSTSPLPPNPPPL 360
Query: 479 QPEPEPEQSVSNHSSVRSPNPLVATSEP 506
P P +SS +S L++T EP
Sbjct: 361 APPLSPSVPPVANSSAKS---LISTLEP 435
>TC85251 homologue to PIR|JQ2128|JQ2128 metallothionein - soybean, partial
(93%)
Length = 1554
Score = 37.0 bits (84), Expect = 0.028
Identities = 56/253 (22%), Positives = 86/253 (33%), Gaps = 8/253 (3%)
Frame = -2
Query: 318 LTPIPESQPAAQTTSPPHSPRSSFFQPSPNEAPLWNNFRTNPPDPLIQPHPSPSKHQNVW 377
+TP+ +QP SPP + + +P AP+ + P P I P SP
Sbjct: 803 ITPVT-TQPPTVVASPPITSQPPV-TVAPKSAPVTS------PAPKIAPASSPK------ 666
Query: 378 LPELLIQTLPQPIHLYPSQLMLLTLLPPITLNPLENSWRSEKEKVSTLEEYYLTCPSPRR 437
+P P S + TL PP+ P K+S P+P +
Sbjct: 665 --------VPPPQPPKSSPVSTPTLPPPLPPPP----------KISPTPVQTPPAPAPVK 540
Query: 438 ---YPGPRPERLVDPDEPILANPLHEADPLAQQVQPAPHQQQPVQPEPEPEQSVSNHSSV 494
P P P + P + P+ P + PAP +P + P+
Sbjct: 539 ATPVPAPAPAKQAPTPAPATSPPIPAPTPAIEAPVPAPESSKPKRRRHRPKH---RRHQA 369
Query: 495 RSPNPLVATSEPHLGASEPHVQTCDIGSPQGASEAHSSNHPA-SPETNLSIIPYTHLRP- 552
+P P V P +P + A S PA +P NL+ P H +
Sbjct: 368 PAPAPTVIHKSP--------------PAPPTDTTADSDTAPAPAPSFNLNGAPSNHFQGG 231
Query: 553 ---TSLSECINIF 562
T++ I +F
Sbjct: 230 NIWTTIGFAITVF 192
>TC78495 homologue to PIR|S53504|S53504 extensin-like protein S3 - alfalfa,
partial (97%)
Length = 1049
Score = 37.0 bits (84), Expect = 0.028
Identities = 44/129 (34%), Positives = 49/129 (37%), Gaps = 6/129 (4%)
Frame = +3
Query: 434 SPRRYPGP-RPERLVDPDEPILANPLHEADPLAQQVQPAPHQQQP--VQPEPEPEQSVSN 490
SP P P P P P +A P Q P P Q P +Q P P QS
Sbjct: 252 SPNSSPAPPTPPANTPPTTP-------QASPPPVQSSPPPVQSSPPPLQSSPPPAQSTP- 407
Query: 491 HSSVRSPNPLVATSEPHLGASEPHVQ-TCDIGSPQGASEAHSSNHPAS--PETNLSIIPY 547
V+S P V S P + P VQ T SP AS S PA+ P T P
Sbjct: 408 -PPVQSSPPPVQQSPPPTPLTPPPVQSTPPPASPPPASPPPFSPPPATPPPATPPPATPP 584
Query: 548 THLRPTSLS 556
L PT LS
Sbjct: 585 PALTPTPLS 611
Score = 32.0 bits (71), Expect = 0.89
Identities = 22/58 (37%), Positives = 25/58 (42%)
Frame = +3
Query: 313 QSSNPLTPIPESQPAAQTTSPPHSPRSSFFQPSPNEAPLWNNFRTNPPDPLIQPHPSP 370
QSS P P+ S P AQ+T PP Q SP PL + P P P SP
Sbjct: 354 QSSPP--PLQSSPPPAQSTPPPVQSSPPPVQQSPPPTPLTPPPVQSTPPPASPPPASP 521
>TC88911 weakly similar to GP|13926280|gb|AAK49610.1 AT5g14920/F2G14_40
{Arabidopsis thaliana}, partial (11%)
Length = 1320
Score = 37.0 bits (84), Expect = 0.028
Identities = 41/140 (29%), Positives = 58/140 (41%), Gaps = 3/140 (2%)
Frame = +2
Query: 247 PSPKKQKKQVRIVVKPTRVEPAAEVIRRVETPARVTRSSAQSSKSAVASDDDLNLFDALP 306
P+ K V V PT V PA ++ +V TP T + + + L +P
Sbjct: 113 PTSAPVKPPVPKVATPT-VAPAKPLVPKVTTP---TAAPVKPIVPKTTTPTSAPLKPPVP 280
Query: 307 ISALLKQSSNPLTPIPESQPAAQTTSPPHSPRSSFFQPSPNEAPLWN---NFRTNPPDPL 363
A + S P+P+S+P TT+P SP + +P + P+ P P
Sbjct: 281 -KAPAPKPSPVKPPVPKSKPP--TTAPVKSPVPDPPKLAPVKLPVPKVTPALSPKTPSPK 451
Query: 364 IQPHPSPSKHQNVWLPELLI 383
IQP P P K V LP L I
Sbjct: 452 IQPPPHPPKKAPVSLPPLSI 511
Score = 34.7 bits (78), Expect = 0.14
Identities = 40/150 (26%), Positives = 56/150 (36%), Gaps = 8/150 (5%)
Frame = +3
Query: 365 QPHPSPSKHQNVWLPELLIQTLPQPIHLYPSQLMLLTLLPPITLNPLENSWRSEKEKVST 424
+PHP H ++ + L LY L L LPP+ L P S+ KVS
Sbjct: 435 KPHPLKFNHHHIHPKKHLF--------LYHHYLYHLVSLPPLPLPPA-----SKPPKVSP 575
Query: 425 LEEYYLTCPSP-RRYPGPRPER-------LVDPDEPILANPLHEADPLAQQVQPAPHQQQ 476
P+P + P P P D + P A P H+ A + P P
Sbjct: 576 APAKVPKAPAPAKEAPAPAPTHKKKAPAPAPDKETPAPA-PTHKKKK-APKSSPVP-SPA 746
Query: 477 PVQPEPEPEQSVSNHSSVRSPNPLVATSEP 506
+ P P P ++ SS +P+P EP
Sbjct: 747 ILPPSPAPTPAIDTPSSAPAPSPEDDAPEP 836
>AJ499220 similar to SP|Q09863|YAF Hypothetical protein C29E6.10c in
chromosome I. [Fission yeast] {Schizosaccharomyces
pombe}, partial (12%)
Length = 518
Score = 36.6 bits (83), Expect = 0.036
Identities = 20/68 (29%), Positives = 41/68 (59%)
Frame = -3
Query: 614 QRIEAAKQRFARRVALHEQEQRQKLLEAIEEARRKQEQAEEAARLAAAQDEQARLEAERL 673
++++ +++ A+ AL +Q++ ++ E R +E+A+ A R ++E+ R E ERL
Sbjct: 213 KKLKEKERKKAKNRALKQQKEEERARREAE--RLAEEKAQRAEREKKLEEERKRREEERL 40
Query: 674 EAEAEARR 681
+ EAE R+
Sbjct: 39 KKEAERRQ 16
>TC77925 similar to GP|18700163|gb|AAL77693.1 AT4g02720/T10P11_1 {Arabidopsis
thaliana}, partial (47%)
Length = 1538
Score = 36.6 bits (83), Expect = 0.036
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 19/99 (19%)
Frame = -3
Query: 335 HSPRSSFFQPSPNEAPLWNNFRTNPP--DPLIQP----------------HPSPSKHQNV 376
HS ++++ S N+ P + +PP DPL+ HP+ + H N+
Sbjct: 1299 HSSSDAYYRSSHNQVPQTSK---SPPQKDPLLLSGEYVSLVEHIAQ*HLLHPA*AHHHNL 1129
Query: 377 WLPELLIQTLPQP-IHLYPSQLMLLTLLPPITLNPLENS 414
+ P+LL L QP +H +P + +T P T P +S
Sbjct: 1128 YAPQLLEAALVQPVVHHHPKPVSSVTQTIPSTSKPQHSS 1012
>TC91930 weakly similar to GP|6691123|gb|AAF24496.1| FH protein NFH1
{Nicotiana tabacum}, partial (5%)
Length = 581
Score = 36.2 bits (82), Expect = 0.047
Identities = 35/168 (20%), Positives = 66/168 (38%), Gaps = 2/168 (1%)
Frame = +1
Query: 434 SPRRYPGPRPERLVDP--DEPILANPLHEADPLAQQVQPAPHQQQPVQPEPEPEQSVSNH 491
SPRR PE +V P +P+L + + + + + H Q PE+ +
Sbjct: 94 SPRRSQPKSPENVVTPAPTQPLLVSDVGRSSLSSSRASSNRHVQSCSSMSSSPEKIFAGE 273
Query: 492 SSVRSPNPLVATSEPHLGASEPHVQTCDIGSPQGASEAHSSNHPASPETNLSIIPYTHLR 551
S +PL + +L S V+ + +G+S SN + ++ S +T
Sbjct: 274 CKSPSLSPLNLSPTKNLDGSFVKVEKTQSCNEEGSSSPRLSNASSGKSSSSSSSAFTLPS 453
Query: 552 PTSLSECINIFHQEASLMLCNVQGQTDLSENADYVDEEWHSLSTWLVA 599
P + +N+ H L D S V + + + S++++A
Sbjct: 454 PEKMMTMMNL-HSNHGL---------DQSPTISDVSDRFRTFSSFIIA 567
>TC89754 similar to GP|21618273|gb|AAM67323.1 unknown {Arabidopsis
thaliana}, partial (88%)
Length = 759
Score = 36.2 bits (82), Expect = 0.047
Identities = 31/115 (26%), Positives = 46/115 (39%), Gaps = 5/115 (4%)
Frame = +2
Query: 433 PSPRRYPGPR---PERLVDPDEPILANPLHEADPLAQQVQPAPHQQQP--VQPEPEPEQS 487
P P PR P R +P++ N P + P PHQ P P S
Sbjct: 5 PQPAYSSLPRCLNPTRK*NPNQKTRFNK-----PPPSPIHPPPHQSIPSSTSSASSPSPS 169
Query: 488 VSNHSSVRSPNPLVATSEPHLGASEPHVQTCDIGSPQGASEAHSSNHPASPETNL 542
++H+SV + +P + P +S P + S +S SSNHP S + +
Sbjct: 170 SAHHASVSNSHP---SPSPPPTSSSPSSSSPTSWSSPASSTTSSSNHPVSAQCKI 325
>TC76721 homologue to GP|8132441|gb|AAF73291.1| extensin {Pisum sativum},
partial (46%)
Length = 674
Score = 35.8 bits (81), Expect = 0.062
Identities = 43/185 (23%), Positives = 65/185 (34%), Gaps = 2/185 (1%)
Frame = +1
Query: 331 TSPPHSPRSSFFQPSPNEAPLWNNFRTNPPDPLIQPHPSPSKHQNVWLPELLIQTLPQPI 390
T P + +S+ SP P + + PP +PSP P ++ P P+
Sbjct: 58 TLPSQTSANSYIYSSPPPPPKPYYYHSPPPPKKPYKYPSPPP------PVYKYKSPPPPV 219
Query: 391 HLYPSQLMLLTLLPPITLNPLENSWRSEKEKVSTLEEYYLTCPSPRRYPGPRPE--RLVD 448
+ Y S PP P ++S V + P +YP P P +
Sbjct: 220 YKYKS--------PP----PPVYKYKSPPPPVYKYKSPPPPPKKPYKYPSPPPPVYKYKS 363
Query: 449 PDEPILANPLHEADPLAQQVQPAPHQQQPVQPEPEPEQSVSNHSSVRSPNPLVATSEPHL 508
P P+ + P P+ + P P PV P P S+ P P+ + PH
Sbjct: 364 PPPPVYSPP-----PVYKYKSPPP----PVYSPPPPHYVYSS-----PPPPVYSPPPPHY 501
Query: 509 GASEP 513
S P
Sbjct: 502 IYSSP 516
>BQ141541 similar to GP|334068|gb|A ORF2 {Pseudorabies virus}, partial (2%)
Length = 1320
Score = 35.8 bits (81), Expect = 0.062
Identities = 22/74 (29%), Positives = 36/74 (47%)
Frame = -2
Query: 306 PISALLKQSSNPLTPIPESQPAAQTTSPPHSPRSSFFQPSPNEAPLWNNFRTNPPDPLIQ 365
P+ +L + +NP +P ++ + +SPP P S PSP +PL PP P +Q
Sbjct: 743 PLVSLSPRVTNPSAFLPAARGSYSPSSPPTPPSFSSRAPSPT-SPL------PPPPPPLQ 585
Query: 366 PHPSPSKHQNVWLP 379
P ++W+P
Sbjct: 584 TAGPPPSFFSLWIP 543
Score = 33.1 bits (74), Expect = 0.40
Identities = 41/157 (26%), Positives = 58/157 (36%), Gaps = 10/157 (6%)
Frame = -2
Query: 283 RSSAQSSKSAVASDDDLNLFDALPISALLKQSSNPLTPIPESQPAAQTTSP--PHSPRSS 340
RSS S S N LP + S+P TP S A TSP P P
Sbjct: 764 RSSVLSPPLVSLSPRVTNPSAFLPAARGSYSPSSPPTPPSFSSRAPSPTSPLPPPPPPLQ 585
Query: 341 FFQPSPNEAPLWNNFRTNPPDPLIQPHPSPSKHQNVWL-------PELLIQTLPQPIHLY 393
P P+ LW F PP PL P S+ +++ LL+ + + L
Sbjct: 584 TAGPPPSFFSLWIPF---PPSPLCPPPSFSSRRSSIFCLVFVRFRSRLLVGAISCYVVLV 414
Query: 394 PSQLMLLTL-LPPITLNPLENSWRSEKEKVSTLEEYY 429
S ++L + LPP+ P R + + Y+
Sbjct: 413 FSFFIVLRVRLPPVPPAPTYRPCRFTRSMFPSFSVYF 303
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.314 0.130 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,762,160
Number of Sequences: 36976
Number of extensions: 429084
Number of successful extensions: 3666
Number of sequences better than 10.0: 228
Number of HSP's better than 10.0 without gapping: 2996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3486
length of query: 747
length of database: 9,014,727
effective HSP length: 103
effective length of query: 644
effective length of database: 5,206,199
effective search space: 3352792156
effective search space used: 3352792156
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0234.16