BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0233.7
(482 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC82456 weakly similar to GP|18057159|gb|AAL58182.1 putative far... 157 1e-38
TC89654 weakly similar to PIR|T05644|T05644 hypothetical protein... 63 2e-31
AW687028 weakly similar to GP|9909176|dbj| hypothetical protein~... 122 2e-28
TC83834 similar to PIR|G96565|G96565 F6D8.26 [imported] - Arabid... 88 8e-18
BG449141 similar to GP|15983442|gb At1g10240/F14N23_12 {Arabidop... 78 7e-15
BQ147857 weakly similar to GP|15983442|gb At1g10240/F14N23_12 {A... 67 2e-11
CA917189 similar to PIR|T05645|T05 hypothetical protein F20D10.3... 51 4e-09
TC89977 similar to GP|5764395|gb|AAD51282.1| far-red impaired re... 37 0.013
TC89517 weakly similar to PIR|A85475|A85475 hypothetical protein... 31 1.2
>TC82456 weakly similar to GP|18057159|gb|AAL58182.1 putative far-red
impaired response protein {Oryza sativa}, partial (7%)
Length = 1244
Score = 157 bits (396), Expect = 1e-38
Identities = 71/143 (49%), Positives = 100/143 (69%)
Frame = +2
Query: 201 VFWVDARSRAAYDSFEDVVSFDSTYLTNR*NMSFSPFVGVNHHGQSILFGCGLLSRKDKE 260
+FW DAR RAAY+ F +V++ D+TYLT++ ++ PFVGVNHHGQ+IL GC +LS D +
Sbjct: 815 LFWADARCRAAYEYFGEVITLDTTYLTSKYDLPLVPFVGVNHHGQTILLGCAILSNLDAK 994
Query: 261 TYVWLFKS*LECMRGRAPKAIITYQCRSIQAAVVEVFSESHHRFCFWHIMKKVPEKLNGL 320
T WLF LECM G AP IIT + ++++ A+ F ++ HR+C WHIMKKVPE L
Sbjct: 995 TLTWLFTRWLECMHGHAPNGIITEEDKAMKNAIEVAFPKARHRWCLWHIMKKVPEMLGKY 1174
Query: 321 TQYKEIKKTLKTLVYDSIEASEF 343
++ + IK L+ +VYDS+ S+F
Sbjct: 1175SRNESIKTLLQDVVYDSMSKSDF 1243
>TC89654 weakly similar to PIR|T05644|T05644 hypothetical protein F20D10.290
- Arabidopsis thaliana, partial (65%)
Length = 1358
Score = 63.2 bits (152), Expect(3) = 2e-31
Identities = 27/56 (48%), Positives = 34/56 (60%)
Frame = +2
Query: 201 VFWVDARSRAAYDSFEDVVSFDSTYLTNR*NMSFSPFVGVNHHGQSILFGCGLLSR 256
+FW D R Y F D V FD+TY TN+ + F+ F G NHHGQ +LFGC S+
Sbjct: 218 IFWADETCRTNYSYFGDTVIFDTTYKTNQYRVPFASFTGFNHHGQPVLFGCAFDSQ 385
Score = 61.2 bits (147), Expect(3) = 2e-31
Identities = 34/107 (31%), Positives = 54/107 (49%), Gaps = 1/107 (0%)
Frame = +3
Query: 253 LLSRKDKETYVWLFKS*LECMRGRAPKAIITYQCRSIQAAVVEVFSESHHRFCFWHIMKK 312
L+ + + +Y+WLFK+ L + GR P +I T IQ AV +V + HRFC W I ++
Sbjct: 375 LILNESEPSYIWLFKTWLRAVSGRPPVSITTDLDPVIQVAVAQVLPPTRHRFCKWSIFRE 554
Query: 313 VPEKLNGLTQYK-EIKKTLKTLVYDSIEASEFDDG*HKMIEDYRLQE 358
KL L Q K V++S+ EF+ ++E Y + +
Sbjct: 555 NRSKLAHLYQSNPTFDNEFKKCVHESVTIDEFESCWRSLLERYYIMD 695
Score = 49.7 bits (117), Expect(3) = 2e-31
Identities = 18/50 (36%), Positives = 32/50 (64%)
Frame = +1
Query: 359 NEWLSSLFSDRRRWVPIYVKSIFWAGMSTTQRSESMNAFFDGYVNSKNLI 408
NEW S+++ R+ WVP+Y++ F+ + +E +N FFDG+VN+ +
Sbjct: 697 NEWPQSMYNARQHWVPVYLRGSFFGEIPLNDGNECLNFFFDGHVNASTTL 846
>AW687028 weakly similar to GP|9909176|dbj| hypothetical protein~similar to
Arabidopsis thaliana F20D10.300, partial (11%)
Length = 662
Score = 122 bits (307), Expect = 2e-28
Identities = 59/189 (31%), Positives = 102/189 (53%)
Frame = +1
Query: 217 DVVSFDSTYLTNR*NMSFSPFVGVNHHGQSILFGCGLLSRKDKETYVWLFKS*LECMRGR 276
DV++FD+TY N+ N F G NHH Q+I+FG LL + E+Y W+ LECM +
Sbjct: 1 DVLAFDTTYKKNKYNYPLCIFSGCNHHSQTIIFGVALLEDETIESYKWVLNRFLECMENK 180
Query: 277 APKAIITYQCRSIQAAVVEVFSESHHRFCFWHIMKKVPEKLNGLTQYKEIKKTLKTLVYD 336
PKA++T S++ A+ +VF ++ HR C WH+ K E + + +K + Y
Sbjct: 181 FPKAVVTDGDGSMREAIKQVFPDASHRLCAWHLHKNAQENIKKTPFLEGFRKAM----YS 348
Query: 337 SIEASEFDDG*HKMIEDYRLQENEWLSSLFSDRRRWVPIYVKSIFWAGMSTTQRSESMNA 396
+ +F+D ++I+ L+ N W+ ++++ W Y++ F+ + TT + E++NA
Sbjct: 349 NFTPEQFEDFWSELIQKNELEGNAWVIKTYANKSLWATAYLRDKFFGRIRTTSQCEAINA 528
Query: 397 FFDGYVNSK 405
Y S+
Sbjct: 529 IVKTYSRSQ 555
>TC83834 similar to PIR|G96565|G96565 F6D8.26 [imported] - Arabidopsis
thaliana, partial (24%)
Length = 1032
Score = 87.8 bits (216), Expect = 8e-18
Identities = 39/79 (49%), Positives = 56/79 (70%)
Frame = +3
Query: 203 WVDARSRAAYDSFEDVVSFDSTYLTNR*NMSFSPFVGVNHHGQSILFGCGLLSRKDKETY 262
WVDA+SRAA F DV+ FD+TYL N+ + VG+NHHGQS+L GCGLL+ + E+Y
Sbjct: 795 WVDAKSRAACGYFSDVIYFDNTYLVNKYEIPLVALVGINHHGQSVLLGCGLLAGEIIESY 974
Query: 263 VWLFKS*LECMRGRAPKAI 281
WLF++ ++C+ +P+ I
Sbjct: 975 KWLFRTWIKCIPRCSPQTI 1031
>BG449141 similar to GP|15983442|gb At1g10240/F14N23_12 {Arabidopsis
thaliana}, partial (33%)
Length = 690
Score = 78.2 bits (191), Expect = 7e-15
Identities = 41/120 (34%), Positives = 62/120 (51%)
Frame = +3
Query: 199 EMVFWVDARSRAAYDSFEDVVSFDSTYLTNR*NMSFSPFVGVNHHGQSILFGCGLLSRKD 258
E + W A S YD F D V FD+T+ +M +VG+N++G FGC LL +
Sbjct: 324 ENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGLWVGINNYGMPCFFGCVLLRDET 503
Query: 259 KETYVWLFKS*LECMRGRAPKAIITYQCRSIQAAVVEVFSESHHRFCFWHIMKKVPEKLN 318
++ W K+ L M G+AP+ I+T Q ++ A+ + H FC W I+ K P +N
Sbjct: 504 VRSFSWAIKAFLGFMNGKAPQTILTDQNICLKEALSAEMPMTKHAFCIWMIVAKFPSWVN 683
>BQ147857 weakly similar to GP|15983442|gb At1g10240/F14N23_12 {Arabidopsis
thaliana}, partial (26%)
Length = 560
Score = 66.6 bits (161), Expect = 2e-11
Identities = 37/132 (28%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
Frame = +1
Query: 277 APKAIITYQCRSIQAAVVEVFSESHHRFCFWHIMKKVPEKLNGL--TQYKEIKKTLKTLV 334
AP+ ++T ++ A+ ES H FC WHI+ K + L +QY E K L
Sbjct: 1 APQTLLTDHNTWLKEAIAVEMPESKHAFCIWHILSKFSDWXYLLLGSQYDEWKADFHRL- 177
Query: 335 YDSIEASEFDDG*HKMIEDYRLQENEWLSSLFSDRRRWVPIYVKSIFWAGMSTTQRSESM 394
Y+ +F+ +M++ Y L N+ + SL+S R W +++ F+AG+++ ++ES+
Sbjct: 178 YNLEMXEDFEKSWRQMVDKYGLHANKHIISLYSLRTFWALPFLRRYFFAGLTSXCQTESI 357
Query: 395 NAFFDGYVNSKN 406
N F ++++++
Sbjct: 358 NVFIQRFLSAQS 393
>CA917189 similar to PIR|T05645|T05 hypothetical protein F20D10.300 -
Arabidopsis thaliana, partial (12%)
Length = 312
Score = 51.2 bits (121), Expect(2) = 4e-09
Identities = 23/49 (46%), Positives = 32/49 (64%)
Frame = +1
Query: 270 LECMRGRAPKAIITYQCRSIQAAVVEVFSESHHRFCFWHIMKKVPEKLN 318
L M GR P +I T IQ+A+++VF ++ HRFC WHI K+ EKL+
Sbjct: 1 LTAMSGRPPLSITTDHDSVIQSAIMQVFPDTRHRFCKWHIFKQCQEKLS 147
Score = 27.7 bits (60), Expect(2) = 4e-09
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 350 MIEDYRLQENEWLSSLFSDRRRW 372
+++ Y L++NEWL ++ S R+W
Sbjct: 243 LLDRYDLRDNEWLQAIHSACRQW 311
>TC89977 similar to GP|5764395|gb|AAD51282.1| far-red impaired response
protein {Arabidopsis thaliana}, partial (35%)
Length = 1523
Score = 37.4 bits (85), Expect = 0.013
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 383 AGMSTTQRSESMNAFFDGYVNSK 405
AG ST QRSESMN+FFD Y++ K
Sbjct: 2 AGTSTAQRSESMNSFFDKYIHKK 70
>TC89517 weakly similar to PIR|A85475|A85475 hypothetical protein AT4g40080
[imported] - Arabidopsis thaliana, partial (46%)
Length = 1177
Score = 30.8 bits (68), Expect = 1.2
Identities = 15/58 (25%), Positives = 31/58 (52%), Gaps = 1/58 (1%)
Frame = +3
Query: 306 FWHIMKKVPEKLNGLTQYKEIKKTLKTLVYD-SIEASEFDDG*HKMIEDYRLQENEWL 362
FW +++++ EK+ + Y+E K +T+ D E+ FDD + ++ R + +L
Sbjct: 873 FWDLVRELKEKVGRMKVYREEGKLNRTVTKDRRTESDRFDDRVLRSVDSIRFPSSRFL 1046
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.358 0.160 0.581
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,325,584
Number of Sequences: 36976
Number of extensions: 234947
Number of successful extensions: 3270
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1829
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 1293
Number of HSP's gapped (non-prelim): 2096
length of query: 482
length of database: 9,014,727
effective HSP length: 100
effective length of query: 382
effective length of database: 5,317,127
effective search space: 2031142514
effective search space used: 2031142514
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0233.7