BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0233.11
(95 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB065379 weakly similar to PIR|E83270|E832 hypothetical protein ... 30 0.20
BE248483 29 0.35
TC80173 similar to GP|9758428|dbj|BAB09014.1 contains similarity... 28 0.59
TC77148 ENOD20 28 0.77
BQ751226 similar to GP|18376350|em probable aldehyde dehydrogena... 27 1.0
TC80733 homologue to SP|Q01233|HS70_NEUCR Heat shock 70 kDa prot... 27 1.7
TC84447 similar to PIR|JC4045|JC4045 GTP-binding protein rho2 - ... 27 1.7
TC84830 26 2.2
TC88799 similar to PIR|C71408|C71408 probable protein kinase - A... 26 2.9
TC84305 weakly similar to PIR|T39881|T39881 preg-like protein - ... 26 2.9
AW695697 weakly similar to GP|10178225|dbj contains similarity t... 26 2.9
TC81798 similar to GP|491441|emb|CAA01049.1| guar alpha galactos... 26 2.9
AW697211 similar to GP|15217284|gb| Hypothetical protein {Oryza ... 25 3.8
BF638002 weakly similar to GP|20260150|gb strong similarity to n... 25 3.8
AJ497071 homologue to PIR|S44760|S447 C14B9.3 protein - Caenorha... 25 3.8
TC78738 similar to GP|9294011|dbj|BAB01914.1 casein kinase-like ... 25 3.8
BQ141932 weakly similar to GP|6523547|emb hydroxyproline-rich gl... 25 3.8
TC93510 similar to GP|21689717|gb|AAM67480.1 unknown protein {Ar... 25 3.8
BQ751190 homologue to PIR|A72706|A727 hypothetical protein APE10... 25 3.8
TC77987 weakly similar to GP|17979277|gb|AAL49864.1 unknown prot... 25 5.0
>CB065379 weakly similar to PIR|E83270|E832 hypothetical protein PA3003
[imported] - Pseudomonas aeruginosa (strain PAO1),
partial (31%)
Length = 627
Score = 29.6 bits (65), Expect = 0.20
Identities = 23/80 (28%), Positives = 30/80 (36%), Gaps = 18/80 (22%)
Frame = -1
Query: 34 SRPQKKATAHHR-KSRPRKSQPWDINRKPTVYAPLP-----------------PLPSDWT 75
S P+ A AHH + P + PW +P + P P P PS W
Sbjct: 498 SPPKTGAPAHHAWTAAPNGAWPW--KTRPPAWKPPPTTPCCCTRPGSKRWAARPAPSPWA 325
Query: 76 LVVSAADASSDEAVAVTPSA 95
V SA+ S A +P A
Sbjct: 324 SVKSASATSRSRAT*ASPKA 265
>BE248483
Length = 500
Score = 28.9 bits (63), Expect = 0.35
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 46 KSRPRKSQPWDINR-KPTVYAPLPPLPSDWTLVVSAADAS 84
K RP K P D + PT Y PLP P+ +T+ DAS
Sbjct: 100 KCRPMKKTPSDKAKIGPTKYDPLPAPPAQYTISK*RTDAS 219
>TC80173 similar to GP|9758428|dbj|BAB09014.1 contains similarity to unknown
protein~gene_id:K8K14.1~sp|Q10058 {Arabidopsis
thaliana}, partial (76%)
Length = 1375
Score = 28.1 bits (61), Expect = 0.59
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 49 PRKSQPWDINRKPTVYAPLPPLPSDWTLVVSAADA 83
PRK P +R P PLP P D++L + +A
Sbjct: 162 PRKVPPSHSSRNPPSPVPLPVKPVDFSLYIGVTEA 266
>TC77148 ENOD20
Length = 1108
Score = 27.7 bits (60), Expect = 0.77
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +3
Query: 33 SSRPQKKATAHHRKSRPRKSQPWDINRK---PTVYAPLPPLPSDWTLVVSAADASSDEAV 89
S P+ H RK P P K P+ L P PSD ++ + + SDE+
Sbjct: 546 SPSPRSTPIPHPRKRSPASPSPSPSLSKSPSPSESPSLAPSPSDSVASLAPSSSPSDESP 725
Query: 90 AVTPS 94
+ PS
Sbjct: 726 SPAPS 740
>BQ751226 similar to GP|18376350|em probable aldehyde dehydrogenase
{Neurospora crassa}, partial (39%)
Length = 807
Score = 27.3 bits (59), Expect = 1.0
Identities = 17/55 (30%), Positives = 27/55 (48%)
Frame = +2
Query: 18 APPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPPLPS 72
+PP +G+ +SRP + +T R+S P ++P R T +P P PS
Sbjct: 146 SPPDSSSTMSGLRESTSRPLRSSTPPPRRSLPPSTRP--PRRMSTSPSPPPARPS 304
>TC80733 homologue to SP|Q01233|HS70_NEUCR Heat shock 70 kDa protein
(HSP70). {Neurospora crassa}, partial (54%)
Length = 1258
Score = 26.6 bits (57), Expect = 1.7
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = +3
Query: 31 VCSSRPQKKATAHHRKSRPRKSQPWDINR-----KPTVYAPLPPLPS 72
V S + + A R S PR+S PW +R +PT+ A P L S
Sbjct: 465 VASLTSRLSSRARTRPSLPRRSPPWFSSRCARPLRPTLAARSPTLSS 605
>TC84447 similar to PIR|JC4045|JC4045 GTP-binding protein rho2 - fission
yeast (Schizosaccharomyces pombe), partial (15%)
Length = 784
Score = 26.6 bits (57), Expect = 1.7
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = +3
Query: 32 CSSRPQKKATAHHRKSRPR 50
C+S P ++ATA RKS PR
Sbjct: 63 CASSPNRRATALPRKSAPR 119
>TC84830
Length = 874
Score = 26.2 bits (56), Expect = 2.2
Identities = 17/46 (36%), Positives = 24/46 (51%), Gaps = 1/46 (2%)
Frame = +3
Query: 35 RPQKKATAHH-RKSRPRKSQPWDINRKPTVYAPLPPLPSDWTLVVS 79
R Q ++T H R+ R R SQP R+P + PPL ++L S
Sbjct: 132 RSQSQST*HQIRRLRCRNSQPHHPFRRPEMQCFAPPLNWGFSLTYS 269
>TC88799 similar to PIR|C71408|C71408 probable protein kinase -
Arabidopsis thaliana, partial (57%)
Length = 1648
Score = 25.8 bits (55), Expect = 2.9
Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 2/51 (3%)
Frame = +2
Query: 47 SRPRKSQPWDINRKPTVYAP--LPPLPSDWTLVVSAADASSDEAVAVTPSA 95
S P S+PW NR + P LPP + S A A+S ++ + PS+
Sbjct: 47 SSPPPSKPW--NRHYNILQPPALPPFSENTN*PASLAAAASPKSTKLIPSS 193
>TC84305 weakly similar to PIR|T39881|T39881 preg-like protein - fission
yeast (Schizosaccharomyces pombe), partial (16%)
Length = 741
Score = 25.8 bits (55), Expect = 2.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 19 PPQMERRGNGVIVCSSRPQKK 39
P ++ERRG G + C+SR K
Sbjct: 482 PDRIERRGPGELACNSRRHSK 544
>AW695697 weakly similar to GP|10178225|dbj contains similarity to
glutamyl-tRNA amidotransferase subunit
A~gene_id:T12B11.3, partial (13%)
Length = 362
Score = 25.8 bits (55), Expect = 2.9
Identities = 8/15 (53%), Positives = 12/15 (79%)
Frame = -1
Query: 44 HRKSRPRKSQPWDIN 58
H+KS+P+ SQ W +N
Sbjct: 224 HKKSKPKASQMWSLN 180
>TC81798 similar to GP|491441|emb|CAA01049.1| guar alpha galactosidase
{synthetic construct}, partial (54%)
Length = 966
Score = 25.8 bits (55), Expect = 2.9
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -3
Query: 43 HHRKSRPRKSQPWDINRKPTVYAPLPPLPSDWT 75
HH ++ S PW ++ + + LPS WT
Sbjct: 364 HHTQNDSSYSTPWGVSNQVHFLQDIS*LPSPWT 266
>AW697211 similar to GP|15217284|gb| Hypothetical protein {Oryza sativa}
[Oryza sativa (japonica cultivar-group)], partial (6%)
Length = 795
Score = 25.4 bits (54), Expect = 3.8
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 6/29 (20%)
Frame = -2
Query: 47 SRPRKSQPWDINRK------PTVYAPLPP 69
SRPR+S+PW ++R+ YAP PP
Sbjct: 617 SRPRRSRPW-VSRERRRRWDDDAYAPPPP 534
>BF638002 weakly similar to GP|20260150|gb strong similarity to naringenin
3-dioxygenase {Arabidopsis thaliana}, partial (40%)
Length = 652
Score = 25.4 bits (54), Expect = 3.8
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 46 KSRPRKSQPWDINRKPTVYAPLPPLPSDWTLVVSAADASSDEAVAVTPSA 95
KS P S P + P+ PLPP P + + A+ + TP+A
Sbjct: 118 KSHPNTSNP--LKTDPSTPIPLPPSPPSTSSTSTPTTATPPSNQSHTPAA 261
>AJ497071 homologue to PIR|S44760|S447 C14B9.3 protein - Caenorhabditis
elegans, partial (2%)
Length = 598
Score = 25.4 bits (54), Expect = 3.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 37 QKKATAHHRKSRPRKSQPWDINRKP 61
+KK +K + +K Q WD+N +P
Sbjct: 314 KKK*QRKEKKKKTKKCQKWDLNPRP 388
>TC78738 similar to GP|9294011|dbj|BAB01914.1 casein kinase-like protein
{Arabidopsis thaliana}, partial (83%)
Length = 2548
Score = 25.4 bits (54), Expect = 3.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 50 RKSQPWDINRKPTVYAPLPPLPS 72
R+S P + R+PT P PPLPS
Sbjct: 557 RRSLP-PVTRRPTKTCPNPPLPS 492
>BQ141932 weakly similar to GP|6523547|emb hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (30%)
Length = 1338
Score = 25.4 bits (54), Expect = 3.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 43 HHRKSRPRKSQPWDINRKPTVYAPLPPLPS 72
HH + P P +NR PT + P P PS
Sbjct: 570 HHHPNPPASQSPATLNR-PTSHTPACPPPS 484
>TC93510 similar to GP|21689717|gb|AAM67480.1 unknown protein {Arabidopsis
thaliana}, partial (40%)
Length = 856
Score = 25.4 bits (54), Expect = 3.8
Identities = 14/30 (46%), Positives = 19/30 (62%), Gaps = 2/30 (6%)
Frame = +1
Query: 61 PTVYAPLPPL--PSDWTLVVSAADASSDEA 88
P V APLPP+ P T + +A+ SSDE+
Sbjct: 508 PEVPAPLPPVPPPHSVTAMPRSANMSSDES 597
>BQ751190 homologue to PIR|A72706|A727 hypothetical protein APE1064 -
Aeropyrum pernix (strain K1), partial (4%)
Length = 808
Score = 25.4 bits (54), Expect = 3.8
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 11 FGVAMAAAPPQMERRGNGVIVCSSRPQKKATAHHRKSR 48
FGV P + RR N + + + TAHH+ R
Sbjct: 192 FGVPPTDRPTNLARRDNSALHWAIYDHPRHTAHHQPDR 305
>TC77987 weakly similar to GP|17979277|gb|AAL49864.1 unknown protein
{Arabidopsis thaliana}, partial (53%)
Length = 1338
Score = 25.0 bits (53), Expect = 5.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 37 QKKATAHHRKSRPRKSQPWDINRKP 61
+K T HH R RK D NR+P
Sbjct: 1261 EKHETHHHHHRRNRKDPNKDXNRQP 1187
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.314 0.124 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,447,926
Number of Sequences: 36976
Number of extensions: 46677
Number of successful extensions: 355
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of query: 95
length of database: 9,014,727
effective HSP length: 71
effective length of query: 24
effective length of database: 6,389,431
effective search space: 153346344
effective search space used: 153346344
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0233.11