TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0229.10
         (277 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2...    40  8e-04
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati...    35  0.041
BG644691 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa...    28  5.0
TC92127 weakly similar to GP|16040952|dbj|BAB69683. receptor kin...    27  8.6

>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
           [imported] - Arabidopsis thaliana, partial (10%)
          Length = 744

 Score = 40.4 bits (93), Expect = 8e-04
 Identities = 38/133 (28%), Positives = 63/133 (46%), Gaps = 14/133 (10%)
 Frame = +2

Query: 1   DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRD--- 57
           DI++ G+  + + +    L   F +K LG L +FLG+EV     G ++L Q +Y  +   
Sbjct: 191 DIVLAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQG-ILLNQRKYTLELLE 367

Query: 58  ----L*AKVNIS-YGEKLQIPHNRGCSFYGS------IAGSLQ*LTITRPEQSYSVKKVC 106
               L  K  ++ Y   L++ HN     Y        + G L  LT TRP+ S++V+++ 
Sbjct: 368 DSGNLAVKSTLTPYDISLKL-HNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLS 544

Query: 107 PFMSSLHDSHRTA 119
            F+S     H  A
Sbjct: 545 QFVSKPQQVHYQA 583


>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
           cultivar-group)}, partial (8%)
          Length = 503

 Score = 34.7 bits (78), Expect = 0.041
 Identities = 22/78 (28%), Positives = 40/78 (51%)
 Frame = +1

Query: 1   DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
           DI +TG     +    + L   F +K LG L++FLG+EV     G+ + +Q +Y+ DL  
Sbjct: 139 DIFLTGDHGK*IKRLKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSI-SQRKYVLDLLK 315

Query: 61  KVNISYGEKLQIPHNRGC 78
           +  +   + ++ P+   C
Sbjct: 316 ETRMIGCKTIRDPYGCNC 369


>BG644691 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (5%)
          Length = 753

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 165 YLRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSL 199
           Y+R +       + WRS*K  VV+ SS  A+YR++
Sbjct: 101 YIRFIQSYEGT*LLWRS*KHNVVALSSV*ADYRAM 205


>TC92127 weakly similar to GP|16040952|dbj|BAB69683. receptor kinase 5
           {Brassica rapa}, partial (18%)
          Length = 507

 Score = 26.9 bits (58), Expect = 8.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 111 SLHDSHRTAINASSTNSKAMSLLASSQACFSRLSFISS 148
           S   S   + +  STNS+      SS AC +RLS +SS
Sbjct: 418 STSSSENDSFSNGSTNSRTTPSFHSSHACPTRLSGLSS 305


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.348    0.152    0.497 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,417,986
Number of Sequences: 36976
Number of extensions: 144171
Number of successful extensions: 1033
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of query: 277
length of database: 9,014,727
effective HSP length: 95
effective length of query: 182
effective length of database: 5,502,007
effective search space: 1001365274
effective search space used: 1001365274
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 58 (26.9 bits)