BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0227.2
(184 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC87992 similar to SP|Q9SEU7|THM3_ARATH Thioredoxin M-type 3 ch... 256 3e-69
TC87867 similar to GP|15594012|emb|CAC69854. putative thioredoxi... 121 2e-28
TC76592 similar to GP|1388088|gb|AAC49358.1| thioredoxin m {Pisu... 113 4e-26
TC93412 similar to GP|15594012|emb|CAC69854. putative thioredoxi... 100 3e-22
TC88946 similar to GP|21592332|gb|AAM64283.1 thioredoxin putati... 83 7e-17
TC79673 weakly similar to SP|Q41864|THIM_MAIZE Thioredoxin M-typ... 77 3e-15
TC78799 weakly similar to SP|P96132|THIO_THIRO Thioredoxin (TRX)... 72 2e-13
TC80315 similar to PIR|B96796|B96796 thioredoxin-like protein 4... 71 3e-13
TC82982 weakly similar to GP|1388082|gb|AAC49355.1| thioredoxin ... 62 1e-10
TC87208 similar to SP|Q43636|THIH_RICCO Thioredoxin H-type (TRX-... 59 8e-10
TC86400 weakly similar to GP|21595244|gb|AAM66084.1 thioredoxin ... 59 1e-09
TC85696 similar to SP|Q43636|THIH_RICCO Thioredoxin H-type (TRX-... 57 4e-09
TC85084 weakly similar to GP|19548654|gb|AAL90749.1 thioredoxin ... 56 9e-09
BF642631 homologue to GP|6560635|gb| thioredoxin-like protein {M... 55 2e-08
TC86595 similar to GP|4928460|gb|AAD33596.1| thioredoxin h {Heve... 54 3e-08
TC78830 similar to GP|12322718|gb|AAG51342.1 thioredoxin-like pr... 54 3e-08
TC90248 weakly similar to GP|19548654|gb|AAL90749.1 thioredoxin ... 52 1e-07
TC90681 weakly similar to GP|19548654|gb|AAL90749.1 thioredoxin ... 52 1e-07
TC90127 similar to PIR|E85439|E85439 thiol-disulfide interchange... 51 2e-07
TC77004 homologue to SP|P38661|PDA6_MEDSA Probable protein disul... 51 3e-07
>TC87992 similar to SP|Q9SEU7|THM3_ARATH Thioredoxin M-type 3 chloroplast
precursor (TRX-M3). [Mouse-ear cress] {Arabidopsis
thaliana}, partial (63%)
Length = 918
Score = 256 bits (655), Expect = 3e-69
Identities = 127/170 (74%), Positives = 144/170 (84%)
Frame = +2
Query: 14 SSSSSSSSSSSSHLHDPFLSSSRSHLNPSLSFPFHLRITHKPLHLQNPPHLPRSHKIRSL 73
+SS+S S +SSSHLH P SSS S LNP SFPFH RITHKPLHLQ P L KIRSL
Sbjct: 47 ASSTSLSLTSSSHLHIPTFSSSPSRLNPLPSFPFHSRITHKPLHLQTP--LLLYPKIRSL 220
Query: 74 RQETRATPITKDLWENSILKSDIPVLVEFYASWCGPCRMVHRVIDDIAKEYAGRLNCFLV 133
RQE RATP+ KDLWE SILKS+ PVLVEFYA+WCGPC+MVHRVID+IA EYAGRL CF++
Sbjct: 221 RQEIRATPVNKDLWEKSILKSETPVLVEFYANWCGPCKMVHRVIDEIATEYAGRLKCFVL 400
Query: 134 NTDTDMQIADDYEIKAVPVVMLFKDGQKCDAVIGTMPKEFYVNAIERVLK 183
NTD DMQIA++Y IKAVPVV+LFK+G+KCDAV+GTMPKEFYV AIER+LK
Sbjct: 401 NTDADMQIAEEYGIKAVPVVVLFKNGKKCDAVVGTMPKEFYVTAIERMLK 550
>TC87867 similar to GP|15594012|emb|CAC69854. putative thioredoxin m2 {Pisum
sativum}, partial (79%)
Length = 816
Score = 121 bits (303), Expect = 2e-28
Identities = 67/182 (36%), Positives = 106/182 (57%), Gaps = 9/182 (4%)
Frame = +3
Query: 10 LTSSSSSSSSSSSSSSHLHDPFLSSSRSHLNPSLSFPFHLRITHKP-----LHLQNPPHL 64
L S+ ++ S S + P ++SSR + +FP + + +P L Q+ +
Sbjct: 36 LRFSAIMATVQLESFSLIRSPIVASSR---RSTATFPPYTGLKLRPVSATRLRSQSTGRV 206
Query: 65 -PRSHKIRSLRQETRATP---ITKDLWENSILKSDIPVLVEFYASWCGPCRMVHRVIDDI 120
PR + ++T A IT W++ +++S+ PVLVEF+A WCGPCRM+H +ID++
Sbjct: 207 FPRGGTVVCEARDTTAVEVASITDGNWQSLVIESETPVLVEFWAPWCGPCRMIHPIIDEL 386
Query: 121 AKEYAGRLNCFLVNTDTDMQIADDYEIKAVPVVMLFKDGQKCDAVIGTMPKEFYVNAIER 180
AKEYAG+L C+ +NTD +A Y I+++P V+ FK+G+K D VIG +PK IE+
Sbjct: 387 AKEYAGKLKCYKLNTDESPSVATRYGIRSIPTVIFFKNGEKKDTVIGAVPKATLTTNIEK 566
Query: 181 VL 182
L
Sbjct: 567 FL 572
>TC76592 similar to GP|1388088|gb|AAC49358.1| thioredoxin m {Pisum sativum},
partial (87%)
Length = 912
Score = 113 bits (283), Expect = 4e-26
Identities = 46/101 (45%), Positives = 72/101 (70%)
Frame = +1
Query: 82 ITKDLWENSILKSDIPVLVEFYASWCGPCRMVHRVIDDIAKEYAGRLNCFLVNTDTDMQI 141
+T W +L SD PVLV+F+A WCGPCRM+ +ID++AKEYAG+++C+ +NTD + I
Sbjct: 328 VTDSSWNELVLASDTPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKISCYKLNTDENPNI 507
Query: 142 ADDYEIKAVPVVMLFKDGQKCDAVIGTMPKEFYVNAIERVL 182
A Y I+++P V+ FK+G+K ++VIG +PK +E+ +
Sbjct: 508 ATKYGIRSIPTVLFFKNGEKKESVIGAVPKSTLSTTVEKYI 630
>TC93412 similar to GP|15594012|emb|CAC69854. putative thioredoxin m2 {Pisum
sativum}, partial (47%)
Length = 624
Score = 100 bits (249), Expect = 3e-22
Identities = 43/85 (50%), Positives = 61/85 (71%)
Frame = +1
Query: 98 VLVEFYASWCGPCRMVHRVIDDIAKEYAGRLNCFLVNTDTDMQIADDYEIKAVPVVMLFK 157
VLVEF+A WCGPCRM+ +ID++A +Y G+L C+ +NTD A Y I+++P VM+FK
Sbjct: 1 VLVEFWAPWCGPCRMITPIIDELAIQYTGKLKCYKLNTDESPSTATRYGIRSIPTVMIFK 180
Query: 158 DGQKCDAVIGTMPKEFYVNAIERVL 182
DG+K D VIG +PK ++IE+ L
Sbjct: 181 DGEKKDTVIGAVPKSTLTSSIEKFL 255
>TC88946 similar to GP|21592332|gb|AAM64283.1 thioredoxin putative
{Arabidopsis thaliana}, partial (61%)
Length = 761
Score = 82.8 bits (203), Expect = 7e-17
Identities = 48/153 (31%), Positives = 77/153 (49%)
Frame = +3
Query: 9 SLTSSSSSSSSSSSSSSHLHDPFLSSSRSHLNPSLSFPFHLRITHKPLHLQNPPHLPRSH 68
++T+S S SSS SH S RS N S S S
Sbjct: 57 TITASISVSSSLPLPRSHRQQRLYSQKRSFSNSSSS----------------------SV 170
Query: 69 KIRSLRQETRATPITKDLWENSILKSDIPVLVEFYASWCGPCRMVHRVIDDIAKEYAGRL 128
+ T I + + ++LKS+ PVLVEF A+WCGPCR++ ++ IA+EYA RL
Sbjct: 171 AVPKFTVSCGITEINESQFNVTVLKSERPVLVEFVATWCGPCRLITPAMESIAQEYADRL 350
Query: 129 NCFLVNTDTDMQIADDYEIKAVPVVMLFKDGQK 161
++ D + Q+ ++Y++ +P ++LFK+G++
Sbjct: 351 TVVKIDHDANPQLIEEYKVYGLPTLILFKNGEE 449
>TC79673 weakly similar to SP|Q41864|THIM_MAIZE Thioredoxin M-type
chloroplast precursor (TRX-M). [Maize] {Zea mays},
partial (37%)
Length = 743
Score = 77.4 bits (189), Expect = 3e-15
Identities = 36/101 (35%), Positives = 61/101 (59%)
Frame = +1
Query: 82 ITKDLWENSILKSDIPVLVEFYASWCGPCRMVHRVIDDIAKEYAGRLNCFLVNTDTDMQI 141
+T + + + +L S+ VLVEF+A C PC+ V + ++A EYAG + F N D + I
Sbjct: 163 VTDENFGSLVLNSETLVLVEFFAPLCSPCKNVDFKMVELANEYAGEVEFFKFNVDDNQLI 342
Query: 142 ADDYEIKAVPVVMLFKDGQKCDAVIGTMPKEFYVNAIERVL 182
Y IK +P V++FK+G++ D + G +PK ++ +E+ L
Sbjct: 343 PSKYGIKGIPNVLIFKNGEQRDTLFGNLPKATFIRRMEQNL 465
>TC78799 weakly similar to SP|P96132|THIO_THIRO Thioredoxin (TRX)
(Fragment). {Thiocapsa roseopersicina}, partial (37%)
Length = 734
Score = 71.6 bits (174), Expect = 2e-13
Identities = 34/100 (34%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Frame = +2
Query: 81 PITKDLWENSILKSDIPVLVEFYASWCG-PCRMVHRVIDDIAKEYAGRLNCFLVNTDTDM 139
PIT + + + + S VLVEFYA WCG C +H ++ ++A +YAG+++ + +N D +
Sbjct: 206 PITDETFGSIVPMSKNLVLVEFYAPWCGQECINIHSIMVELANDYAGKVDFYKLNIDENP 385
Query: 140 QIADDYEIKAVPVVMLFKDGQKCDAVIGTMPKEFYVNAIE 179
I + Y I+ +P V+ K G + D ++G +PK ++ I+
Sbjct: 386 YITNRYGIQNLPTVVFIKYGMQRDRLVGYVPKATFIELIQ 505
>TC80315 similar to PIR|B96796|B96796 thioredoxin-like protein 49720-48645
[imported] - Arabidopsis thaliana, partial (70%)
Length = 802
Score = 70.9 bits (172), Expect = 3e-13
Identities = 30/96 (31%), Positives = 57/96 (59%)
Frame = +2
Query: 87 WENSILKSDIPVLVEFYASWCGPCRMVHRVIDDIAKEYAGRLNCFLVNTDTDMQIADDYE 146
+++ + SD PV V+FYA+WCGPC+ + V+++++ ++ ++T+ IA+ Y
Sbjct: 188 FDDLLANSDKPVFVDFYATWCGPCQFMVPVLEEVSARLQDQIQIVKIDTEKYPSIANKYN 367
Query: 147 IKAVPVVMLFKDGQKCDAVIGTMPKEFYVNAIERVL 182
I+A+P ++FKDG+ D G + + + IE L
Sbjct: 368 IEALPTFIIFKDGKPFDRFEGALTADKLIERIETTL 475
>TC82982 weakly similar to GP|1388082|gb|AAC49355.1| thioredoxin h
{Arabidopsis thaliana}, partial (38%)
Length = 481
Score = 62.4 bits (150), Expect = 1e-10
Identities = 30/84 (35%), Positives = 48/84 (56%)
Frame = +1
Query: 84 KDLWENSILKSDIPVLVEFYASWCGPCRMVHRVIDDIAKEYAGRLNCFLVNTDTDMQIAD 143
KD + + K + V+V+F ASWC PC+M+ + ++A+EY V+ D + +I
Sbjct: 55 KDDFNKELNKGKL-VIVDFTASWCPPCKMIAPIFKNLAEEYKKVAIFLKVDGDENPEITK 231
Query: 144 DYEIKAVPVVMLFKDGQKCDAVIG 167
+Y I A P FKDG+K D ++G
Sbjct: 232 EYGISAYPTFFFFKDGKKIDEIVG 303
>TC87208 similar to SP|Q43636|THIH_RICCO Thioredoxin H-type (TRX-H). [Castor
bean] {Ricinus communis}, partial (94%)
Length = 682
Score = 59.3 bits (142), Expect = 8e-10
Identities = 32/101 (31%), Positives = 57/101 (55%), Gaps = 3/101 (2%)
Frame = +3
Query: 83 TKDLWENSILKSDIP---VLVEFYASWCGPCRMVHRVIDDIAKEYAGRLNCFLVNTDTDM 139
T + W+ I K + ++V+F ASWCGPCR + ++ +IAK+ + V+ D
Sbjct: 81 TVEQWKEEIQKGNDSKKLIVVDFTASWCGPCRFIAPILAEIAKKIP-EVIFLKVDIDEVK 257
Query: 140 QIADDYEIKAVPVVMLFKDGQKCDAVIGTMPKEFYVNAIER 180
+A ++ ++A+P + K+G++ D V+G KE NAI +
Sbjct: 258 SVAKEWSVEAMPTFLFLKEGKEVDKVVGAR-KEELENAITK 377
>TC86400 weakly similar to GP|21595244|gb|AAM66084.1 thioredoxin
{Arabidopsis thaliana}, partial (82%)
Length = 746
Score = 58.5 bits (140), Expect = 1e-09
Identities = 24/84 (28%), Positives = 50/84 (58%)
Frame = +2
Query: 89 NSILKSDIPVLVEFYASWCGPCRMVHRVIDDIAKEYAGRLNCFLVNTDTDMQIADDYEIK 148
N + S V+++F A+WCGPC+M+ ++ +A E+ + ++ D +A +++++
Sbjct: 215 NELKDSPRLVVIDFSATWCGPCKMMEPILQAMANEFTD-VEFIKIDVDELSDVAQEFKVQ 391
Query: 149 AVPVVMLFKDGQKCDAVIGTMPKE 172
A+P +L K+G++ D V+G E
Sbjct: 392 AMPTFLLLKNGKEVDKVVGAKKDE 463
>TC85696 similar to SP|Q43636|THIH_RICCO Thioredoxin H-type (TRX-H). [Castor
bean] {Ricinus communis}, partial (94%)
Length = 714
Score = 57.0 bits (136), Expect = 4e-09
Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Frame = +2
Query: 45 FPFHLRITHKPLHLQNPPHLPRSHKIRSLRQETRATPITKDLWENSILK---SDIPVLVE 101
+P ++ K HL+ R K + + T + W+ + K S ++V+
Sbjct: 23 WPGRANLSEKNRHLKAKA*FVRRKKKMAAEEGHVIGVHTVEAWKEHLEKGNGSKKLIVVD 202
Query: 102 FYASWCGPCRMVHRVIDDIAKEYAGRLNCFLVNTDTDMQIADDYEIKAVPVVMLFKDGQK 161
F ASWCGPCR + ++ +IAK+ + V+ D +A+++ + A+P + K+G+
Sbjct: 203 FTASWCGPCRFIAPILAEIAKKLP-NVTFLKVDVDELKTVAEEWAVDAMPTFLFLKEGKL 379
Query: 162 CDAVIGTMPKE 172
D V+G ++
Sbjct: 380 VDKVVGAQKEQ 412
>TC85084 weakly similar to GP|19548654|gb|AAL90749.1 thioredoxin H {Populus
tremula x Populus tremuloides}, partial (41%)
Length = 601
Score = 55.8 bits (133), Expect = 9e-09
Identities = 22/69 (31%), Positives = 45/69 (64%)
Frame = +3
Query: 98 VLVEFYASWCGPCRMVHRVIDDIAKEYAGRLNCFLVNTDTDMQIADDYEIKAVPVVMLFK 157
+++EF A+WCGPC+ + +I D A +Y +++ ++ D M I+ +++++A+P +L K
Sbjct: 177 MVIEFTAAWCGPCKYMDPIIQDFAAKYI-KVDFIKIDVDELMSISQEFQVQAMPTFILMK 353
Query: 158 DGQKCDAVI 166
G+ D V+
Sbjct: 354 KGKVVDKVV 380
>BF642631 homologue to GP|6560635|gb| thioredoxin-like protein {Manduca
sexta}, complete
Length = 518
Score = 54.7 bits (130), Expect = 2e-08
Identities = 23/70 (32%), Positives = 40/70 (56%)
Frame = +3
Query: 98 VLVEFYASWCGPCRMVHRVIDDIAKEYAGRLNCFLVNTDTDMQIADDYEIKAVPVVMLFK 157
V+++F A+WCGPC+M+ +D++A E A + V+ D IA +Y I ++P + K
Sbjct: 111 VVIDFMATWCGPCKMIGPKLDEMANEMADSIVVLKVDVDECEDIATEYNINSMPTFVFVK 290
Query: 158 DGQKCDAVIG 167
+K + G
Sbjct: 291 SSKKIEEFSG 320
>TC86595 similar to GP|4928460|gb|AAD33596.1| thioredoxin h {Hevea
brasiliensis}, partial (90%)
Length = 813
Score = 54.3 bits (129), Expect = 3e-08
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Frame = +2
Query: 66 RSHKIRSLR-------QETRATPITKDL---WE---NSILKSDIPVLVEFYASWCGPCRM 112
R+H++ S R +E ++ + D WE N + P++V F ASWC P
Sbjct: 122 RNHQVES*RKVKMENTEENKSKVVVIDSLQSWEFHVNQASNQNSPIVVHFTASWCMPSVA 301
Query: 113 VHRVIDDIAKEYAGRLNCFL-VNTDTDMQIADDYEIKAVPVVMLFKDGQKCDAVIGTMPK 171
+ ++ A +Y L FL V+ D ++A +IKA+P +L KDG D ++G P+
Sbjct: 302 MIPFFEEFASDYPDFL--FLSVDVDEVKEVATKNDIKAMPTFLLLKDGAPSDKIVGANPE 475
Query: 172 E 172
E
Sbjct: 476 E 478
>TC78830 similar to GP|12322718|gb|AAG51342.1 thioredoxin-like protein;
56513-57227 {Arabidopsis thaliana}, partial (88%)
Length = 975
Score = 54.3 bits (129), Expect = 3e-08
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Frame = +3
Query: 83 TKDLWENSI---LKSDIPVLVEFYASWCGPCRMVHRVIDDIAKEYAGRLNCFLVNTDTDM 139
TK+ W+ + K V+ F A WCGPC+++ +++++Y + LV+ D
Sbjct: 300 TKEAWDQKLEEAKKDGKIVIANFSAVWCGPCKVIAPYYCEMSEKYTSMM-FLLVDVDELT 476
Query: 140 QIADDYEIKAVPVVMLFKDGQKCDAVIGTMPKE 172
+ ++IKA P KDGQ+ D ++G E
Sbjct: 477 DFSTSWDIKATPTFFFLKDGQQLDKLVGANKPE 575
>TC90248 weakly similar to GP|19548654|gb|AAL90749.1 thioredoxin H {Populus
tremula x Populus tremuloides}, partial (63%)
Length = 660
Score = 52.4 bits (124), Expect = 1e-07
Identities = 20/75 (26%), Positives = 46/75 (60%)
Frame = +1
Query: 98 VLVEFYASWCGPCRMVHRVIDDIAKEYAGRLNCFLVNTDTDMQIADDYEIKAVPVVMLFK 157
++++F A+WCGPC+ + +I ++A +Y + ++ D M +A ++++A+P +L K
Sbjct: 202 MVIDFTATWCGPCKYMDPIIKELAAKYKD-VEFIKIDVDELMDVASAFQVQAMPTFILLK 378
Query: 158 DGQKCDAVIGTMPKE 172
G+ + V+G ++
Sbjct: 379 KGKVVEKVVGAKKEQ 423
>TC90681 weakly similar to GP|19548654|gb|AAL90749.1 thioredoxin H {Populus
tremula x Populus tremuloides}, partial (60%)
Length = 637
Score = 52.0 bits (123), Expect = 1e-07
Identities = 21/75 (28%), Positives = 44/75 (58%)
Frame = +2
Query: 98 VLVEFYASWCGPCRMVHRVIDDIAKEYAGRLNCFLVNTDTDMQIADDYEIKAVPVVMLFK 157
++++F A WCGPC+++ V+ D A +Y + ++ D M ++ +++ ++P +L K
Sbjct: 197 MVIDFTAKWCGPCKVMDPVMKDFAAKYTD-VEFIKLDVDELMGVSQTFQVHSLPTFLLIK 373
Query: 158 DGQKCDAVIGTMPKE 172
G+ D V+G +E
Sbjct: 374 KGKVVDKVVGARKEE 418
>TC90127 similar to PIR|E85439|E85439 thiol-disulfide interchange like
protein [imported] - Arabidopsis thaliana, partial (53%)
Length = 754
Score = 51.2 bits (121), Expect = 2e-07
Identities = 25/90 (27%), Positives = 49/90 (53%), Gaps = 3/90 (3%)
Frame = +1
Query: 92 LKSDIPVLVEFYASWCGPCRMVHRVIDDIAKEYAGRLNCFLVNTDTDM--QIADDYEIKA 149
L + P +VEFYA WC CR + + I ++Y ++N ++N D Q D++ ++
Sbjct: 469 LSNGKPTVVEFYADWCEVCRELAPDVYKIEQQYKNKVNFVMLNVDNTKWEQELDEFGVEG 648
Query: 150 VP-VVMLFKDGQKCDAVIGTMPKEFYVNAI 178
+P L K+G + V+G +P+++ + +
Sbjct: 649 IPHFAFLDKEGNEEGNVVGRIPRQYLLENV 738
>TC77004 homologue to SP|P38661|PDA6_MEDSA Probable protein disulfide
isomerase A6 precursor (EC 5.3.4.1) (P5). [Alfalfa]
{Medicago sativa}, complete
Length = 1575
Score = 50.8 bits (120), Expect = 3e-07
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +2
Query: 82 ITKDLWENSILKSDIPVLVEFYASWCGPCRMVHRVIDDIAKEYAGRLNCFLVNTDTD--M 139
+T + + +L VLVEFYA WCG C+ + + + +A + + + N D D
Sbjct: 545 LTPETFNEVVLDETKDVLVEFYAPWCGHCKSLAPIYEKVAAVFKSEDDVVIANLDADKYR 724
Query: 140 QIADDYEIKAVPVVMLFKDGQK 161
+A+ Y++ P + F G K
Sbjct: 725 DLAEKYDVSGFPTLKFFPKGNK 790
Score = 37.4 bits (85), Expect = 0.003
Identities = 19/80 (23%), Positives = 34/80 (41%), Gaps = 2/80 (2%)
Frame = +2
Query: 82 ITKDLWENSILKSDIPVLVEFYASWCGPCRMVHRVIDDIAKEYAGRLNCFLVNTDTDMQ- 140
+T++ +E + D LVEFYA WCG C+ + + + + + + D D
Sbjct: 191 LTEENFEKEV-GQDKGALVEFYAPWCGHCKKLAPEYEKLGNSFKKAKSVLIAKVDCDEHK 367
Query: 141 -IADDYEIKAVPVVMLFKDG 159
+ Y + P + F G
Sbjct: 368 GVCSKYGVSGYPTIQWFPKG 427
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.131 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,467,339
Number of Sequences: 36976
Number of extensions: 171738
Number of successful extensions: 8145
Number of sequences better than 10.0: 475
Number of HSP's better than 10.0 without gapping: 3087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5366
length of query: 184
length of database: 9,014,727
effective HSP length: 90
effective length of query: 94
effective length of database: 5,686,887
effective search space: 534567378
effective search space used: 534567378
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0227.2