TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0223.17
         (88 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC85261 weakly similar to GP|7406710|emb|CAB85634.1 putative rip...    27  1.4
TC81272 similar to PIR|T05225|T05225 extensin homolog F17I5.160 ...    25  6.8
AL388988                                                               24  8.9
BG644342 homologue to PIR|T07391|T07 probable alpha-glucosidase ...    24  8.9
TC77594 similar to PIR|T10672|T10672 aspartate--tRNA ligase homo...    24  8.9

>TC85261 weakly similar to GP|7406710|emb|CAB85634.1 putative
           ripening-related protein {Vitis vinifera}, partial (15%)
          Length = 1002

 Score = 26.9 bits (58), Expect = 1.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 60  GHMSQREIHRQLQADLVEHIWEL 82
           GH + R   R+LQ DL+ H W L
Sbjct: 357 GHTNMRS*KRKLQVDLLIHTWTL 425


>TC81272 similar to PIR|T05225|T05225 extensin homolog F17I5.160 -
           Arabidopsis thaliana, partial (3%)
          Length = 757

 Score = 24.6 bits (52), Expect = 6.8
 Identities = 10/24 (41%), Positives = 12/24 (49%)
 Frame = -2

Query: 57  ERRGHMSQREIHRQLQADLVEHIW 80
           E R H  + E HR+ Q    EH W
Sbjct: 237 EHRKHQGRAEEHRKHQGQAEEHRW 166


>AL388988 
          Length = 401

 Score = 24.3 bits (51), Expect = 8.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 4   CMQILYACIILHNMIVEDEREGYN 27
           C Q+L +C+ ++N++   +R  YN
Sbjct: 327 CAQLLASCVTVYNVVRLRQRHVYN 256


>BG644342 homologue to PIR|T07391|T07 probable alpha-glucosidase (EC
          3.2.1.20) - potato, partial (26%)
          Length = 731

 Score = 24.3 bits (51), Expect = 8.9
 Identities = 13/45 (28%), Positives = 20/45 (43%)
 Frame = +3

Query: 24 EGYNGNFVYDQVDNDIITAEVSNGPIPSFATFLERRGHMSQREIH 68
          + Y G+  Y  + ND+    V NGP  +        G +  RE+H
Sbjct: 24 DSYVGSTKYLYIWNDMNEPSVFNGPEVTMPRDALHHGGVEHRELH 158


>TC77594 similar to PIR|T10672|T10672 aspartate--tRNA ligase homolog
           F6E21.100 - Arabidopsis thaliana, partial (73%)
          Length = 2043

 Score = 24.3 bits (51), Expect = 8.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 23  REGYNGNFVYDQVDNDIITAEVSN 46
           R G+NGN+ +D +DN  +TAE S+
Sbjct: 573 RSGWNGNYTFD-IDNR-LTAESSS 508


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.327    0.141    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,621,905
Number of Sequences: 36976
Number of extensions: 27522
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of query: 88
length of database: 9,014,727
effective HSP length: 64
effective length of query: 24
effective length of database: 6,648,263
effective search space: 159558312
effective search space used: 159558312
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)