BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0218.28
(278 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86494 homologue to GP|7228329|emb|CAB77055.1 putative TFIIIA (... 278 1e-75
TC77176 homologue to GP|7228329|emb|CAB77055.1 putative TFIIIA (... 214 3e-56
TC82573 similar to PIR|T09602|T09602 probable zinc finger protei... 188 2e-48
BG648193 similar to GP|2346976|dbj| ZPT2-13 {Petunia x hybrida},... 86 2e-17
AW775690 similar to GP|8567776|gb|A hypothetical protein {Arabid... 80 7e-16
TC88653 similar to GP|1786134|dbj|BAA19110.1 PEThy;ZPT2-5 {Petun... 79 2e-15
TC81921 homologue to GP|2346978|dbj|BAA21923.1 ZPT2-14 {Petunia ... 75 2e-14
TC88075 homologue to GP|2346978|dbj|BAA21923.1 ZPT2-14 {Petunia ... 74 6e-14
TC81612 similar to GP|2346978|dbj|BAA21923.1 ZPT2-14 {Petunia x ... 74 8e-14
TC93387 similar to GP|1786136|dbj|BAA19111.1 PEThy;ZPT2-6 {Petun... 64 8e-11
AL371585 similar to PIR|S69193|S691 probable finger protein Pszf... 51 6e-07
TC82775 similar to PIR|T52382|T52382 zinc finger protein ZPT4-4 ... 50 1e-06
TC80421 similar to PIR|D96707|D96707 probable zinc finger protei... 43 2e-04
BI308410 similar to PIR|S55882|S558 CCHH finger protein 2 - Arab... 43 2e-04
TC88476 homologue to GP|21592423|gb|AAM64374.1 zinc finger prote... 39 0.002
AW686309 homologue to PIR|S55886|S558 CCHH finger protein 6 - Ar... 39 0.002
TC82737 homologue to PIR|B96686|B96686 probable C2H2-type zinc f... 37 0.006
BI310179 similar to PIR|T52381|T523 zinc finger protein Zat1 C2... 36 0.014
BE941923 weakly similar to GP|2346978|dbj| ZPT2-14 {Petunia x hy... 36 0.014
BG449113 similar to PIR|S55881|S558 CCHH finger protein 1 - Arab... 36 0.019
>TC86494 homologue to GP|7228329|emb|CAB77055.1 putative TFIIIA (or
kruppel)-like zinc finger protein {Medicago sativa},
partial (39%)
Length = 1092
Score = 278 bits (712), Expect = 1e-75
Identities = 161/279 (57%), Positives = 184/279 (65%), Gaps = 8/279 (2%)
Frame = +2
Query: 1 MALETLNS-PTAATTPFRSSYQQEEEEEELHHHEPWTKKKRSKRPRFD--NPTTTEEEYL 57
+ L+TLNS PT ATT + + ++EE E KKKRSKRPR NP T EEEYL
Sbjct: 68 LELQTLNSSPTGATTTIPIPFPRFKQEEN-QERESLVKKKRSKRPRIGIGNPPT-EEEYL 241
Query: 58 ALCLIMLAQSGNNNNKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKLTHKCSVCDKAF 117
ALCLIML+QS N Q PLKL HKCSVC+KAF
Sbjct: 242 ALCLIMLSQSNNQI----------------------------QSSPLKLNHKCSVCNKAF 337
Query: 118 PSYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNGGKMHECSICHKSFPTGQAL 177
PSYQALGGHKASHRKSSSENQ + VN+ SVS ST KMHECSICHKSFPTGQAL
Sbjct: 338 PSYQALGGHKASHRKSSSENQ---STTVNETISVSVST---SKMHECSICHKSFPTGQAL 499
Query: 178 GGHKRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGGAASAHSLRGFDLNLPAPLTEFWTP 237
GGHKRCHYEG ++N ++N + SS +T + G A+S+ S RGFDLNLPAPLTEFW+P
Sbjct: 500 GGHKRCHYEGVINNNHNHNN---SNSSGITVSDAGAASSSISHRGFDLNLPAPLTEFWSP 670
Query: 238 LGIGGGDSRTNKIR-----SGEQEVESPLPVTAKRPRLF 271
+G GGGDS+ NK+ EQEVESPLPVTAKRPRLF
Sbjct: 671 VGFGGGDSKKNKVNVNLAGINEQEVESPLPVTAKRPRLF 787
>TC77176 homologue to GP|7228329|emb|CAB77055.1 putative TFIIIA (or
kruppel)-like zinc finger protein {Medicago sativa},
partial (96%)
Length = 1005
Score = 214 bits (545), Expect = 3e-56
Identities = 138/276 (50%), Positives = 161/276 (58%), Gaps = 5/276 (1%)
Frame = +2
Query: 1 MALETLNSPTAAT--TPFRSSYQQEEEEEELHHHE-PWTKKKRSKRPRFDNPTTTEEEYL 57
MA+E LNSPT AT TPF EE L + E PWTK KRSKR R D + TEEEYL
Sbjct: 110 MAMEALNSPTTATPFTPF--------EEPNLSYLETPWTKGKRSKRSRMDQSSCTEEEYL 265
Query: 58 ALCLIMLAQSGNNNNKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKLTHKCSVCDKAF 117
ALCLIMLA+SGNNN DN T +S P +KL+HKCSVC+KAF
Sbjct: 266 ALCLIMLARSGNNN------DNKT-----------ESVPVPAPLTTVKLSHKCSVCNKAF 394
Query: 118 PSYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNGGK--MHECSICHKSFPTGQ 175
SYQALGGHKASHRK+ T +++V+TS+ + GK HECSICHKSFPTGQ
Sbjct: 395 SSYQALGGHKASHRKAVMSATTVEDQTTTTSSAVTTSSASNGKNKTHECSICHKSFPTGQ 574
Query: 176 ALGGHKRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGGAASAHSLRGFDLNLPAPLTEFW 235
ALGGHKRCHYEG + + SSAVT S+G +S R FDLNLPA +F
Sbjct: 575 ALGGHKRCHYEGSVGAGA--------GSSAVTAASEGVGSSHSHHRDFDLNLPA-FPDF- 724
Query: 236 TPLGIGGGDSRTNKIRSGEQEVESPLPVTAKRPRLF 271
+K + EV SPLP AK+P LF
Sbjct: 725 ------------SKKFFVDDEVSSPLP-AAKKPCLF 793
>TC82573 similar to PIR|T09602|T09602 probable zinc finger protein SCOF-1
cold-inducible - soybean, partial (65%)
Length = 857
Score = 188 bits (478), Expect = 2e-48
Identities = 126/274 (45%), Positives = 155/274 (55%), Gaps = 2/274 (0%)
Frame = +3
Query: 1 MALETLNSPTAATTPFRSSYQQEEEEEELHHHEPWTKKKRSKRPRFDNPTTTEEEYLALC 60
MALE LNSPT+ T F +E L PWTK+KRSKR R + TEEEYLALC
Sbjct: 39 MALEALNSPTSTTPKFTF------DEPNL----PWTKRKRSKRSR----SCTEEEYLALC 176
Query: 61 LIMLAQSGNNNNKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKLTHKCSVCDKAFPSY 120
LIMLA+ G+ N + N N T +++N+ KL++KCSVC+K F SY
Sbjct: 177 LIMLAR-GHTNRHDFNPLNPPPTTIDNNNNNT------------KLSYKCSVCNKEFSSY 317
Query: 121 QALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNGG--KMHECSICHKSFPTGQALG 178
QALGGHKASHRK+S + + A+ S++ NGG + HECSICH+SFPTGQALG
Sbjct: 318 QALGGHKASHRKNSVGGGGDDHPSTSSAATTSSANTNGGGVRSHECSICHRSFPTGQALG 497
Query: 179 GHKRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGGAASAHSLRGFDLNLPAPLTEFWTPL 238
GHKRCHYEG V +SAVT + G+ +H R FDLN+PA EF
Sbjct: 498 GHKRCHYEG----------VVGGGASAVTVSEGMGSTHSHQ-RDFDLNIPA-FPEF---- 629
Query: 239 GIGGGDSRTNKIRSGEQEVESPLPVTAKRPRLFF 272
NK+ GE EVESP PV K+ F
Sbjct: 630 --------ANKV--GEDEVESPHPVMMKKKARVF 701
>BG648193 similar to GP|2346976|dbj| ZPT2-13 {Petunia x hybrida}, partial
(43%)
Length = 629
Score = 85.5 bits (210), Expect = 2e-17
Identities = 47/104 (45%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = +2
Query: 82 NTLRAESSSNSQSQS-PPQQQPPLKLTHKCSVCDKAFPSYQALGGHKASHRKSSSENQTP 140
N L S Q Q+ P Q+ + ++C C+K FPS+QALGGH+ASH++S E
Sbjct: 140 NCLMMLSYPQHQPQNNKPNQKSFAPVEYECKTCNKKFPSFQALGGHRASHKRSKLEGDEL 319
Query: 141 AAAAVNDNASVSTSTGNGGKMHECSICHKSFPTGQALGGHKRCH 184
S S S GN KMHECSIC ++F GQALGGH R H
Sbjct: 320 LTN------STSLSLGNKPKMHECSICGQNFSLGQALGGHMRRH 433
Score = 33.1 bits (74), Expect = 0.12
Identities = 13/29 (44%), Positives = 18/29 (61%)
Frame = +2
Query: 108 HKCSVCDKAFPSYQALGGHKASHRKSSSE 136
H+CS+C + F QALGGH H+ +E
Sbjct: 365 HECSICGQNFSLGQALGGHMRRHKAIMNE 451
>AW775690 similar to GP|8567776|gb|A hypothetical protein {Arabidopsis
thaliana}, partial (20%)
Length = 631
Score = 80.5 bits (197), Expect = 7e-16
Identities = 58/173 (33%), Positives = 80/173 (45%), Gaps = 31/173 (17%)
Frame = +2
Query: 53 EEEYLALCLIMLAQSGN------NNNKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKL 106
EEE LA CLI+LA+ N N + +N+ D+N N SSN
Sbjct: 167 EEEDLANCLILLARGHNHRHDYQNTHVSNHRDHNNN-----KSSNFY------------- 292
Query: 107 THKCSVCDKAFPSYQALGGHKASHRKSSSENQTPA--------AAAVNDNAS-------- 150
++C C++ FPS+QALGGH+ASH K + N A ++ V+D+
Sbjct: 293 LYECKTCNRCFPSFQALGGHRASHTKPNKANCNVAQQKQAVTTSSFVDDHYDPTMNTILS 472
Query: 151 ---------VSTSTGNGGKMHECSICHKSFPTGQALGGHKRCHYEGGKSSNST 194
+ T K+HECSIC F +GQALGGH R H +S +T
Sbjct: 473 LQAFAATPITTIPTTKKSKVHECSICGAEFSSGQALGGHMRRHKNLVNTSTTT 631
Score = 48.9 bits (115), Expect = 2e-06
Identities = 41/172 (23%), Positives = 69/172 (39%)
Frame = +2
Query: 39 KRSKRPRFDNPTTTEEEYLALCLIMLAQSGNNNNKNNNTDNNTNTLRAESSSNSQSQSPP 98
KR+KR R +P L + + G + + NNN ++ +S S+ +
Sbjct: 5 KRTKRQRLPSPLR-----LTMPVSNSCNEGTSYDNNNNNSGGIEFVKIDSRDRSEEEKEE 169
Query: 99 QQQPPLKLTHKCSVCDKAFPSYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNG 158
++ D A GH H ++ V+++ + + +
Sbjct: 170 EE-------------DLANCLILLARGHNHRHDYQNTH--------VSNHRDHNNNKSSN 286
Query: 159 GKMHECSICHKSFPTGQALGGHKRCHYEGGKSSNSTNSNVHANTSSAVTTTS 210
++EC C++ FP+ QALGGH+ H N N NV A AVTT+S
Sbjct: 287 FYLYECKTCNRCFPSFQALGGHRASH----TKPNKANCNV-AQQKQAVTTSS 427
>TC88653 similar to GP|1786134|dbj|BAA19110.1 PEThy;ZPT2-5 {Petunia x
hybrida}, partial (59%)
Length = 866
Score = 79.0 bits (193), Expect = 2e-15
Identities = 43/109 (39%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Frame = +1
Query: 109 KCSVCDKAFPSYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNGGKMHECSICH 168
+C C + F S+QALGGH+ASH+K T + + + S+ TST K H CSIC
Sbjct: 154 ECKTCKRQFSSFQALGGHRASHKKPRLMEMT--SDGDDHHGSILTSTTKA-KTHACSICG 324
Query: 169 KSFPTGQALGGHKRCHYEGGKS-SNSTNSNVHANTSSAVTTTSDGGAAS 216
F GQALGGH R H S +N++N N+H ++ T++S+ G ++
Sbjct: 325 LEFGIGQALGGHMRRHRRTESSKANNSNGNMHNFMTTTTTSSSNSGCST 471
Score = 40.4 bits (93), Expect = 8e-04
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +1
Query: 107 THKCSVCDKAFPSYQALGGHKASHRKSSSENQTPAAAAV-NDNASVSTSTGNGGKMHECS 165
TH CS+C F QALGGH HR++ S + + N + +TS+ N G CS
Sbjct: 301 THACSICGLEFGIGQALGGHMRRHRRTESSKANNSNGNMHNFMTTTTTSSSNSG----CS 468
Query: 166 ICHKSFPTGQA 176
S T A
Sbjct: 469 TIDNSTNTDSA 501
Score = 35.0 bits (79), Expect = 0.032
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +1
Query: 151 VSTSTGNGGKMHECSICHKSFPTGQALGGHKRCHYEGGKSSNSTNSNVHANTSSAVTTTS 210
V+ S+ ++ EC C + F + QALGGH+ H + +++ + H + TT +
Sbjct: 118 VNYSSNFNNRVFECKTCKRQFSSFQALGGHRASHKKPRLMEMTSDGDDHHGSILTSTTKA 297
Query: 211 DGGAAS 216
A S
Sbjct: 298 KTHACS 315
>TC81921 homologue to GP|2346978|dbj|BAA21923.1 ZPT2-14 {Petunia x hybrida},
partial (41%)
Length = 839
Score = 75.5 bits (184), Expect = 2e-14
Identities = 47/136 (34%), Positives = 67/136 (48%)
Frame = +3
Query: 82 NTLRAESSSNSQSQSPPQQQPPLKLTHKCSVCDKAFPSYQALGGHKASHRKSSSENQTPA 141
N L S + Q ++ +C C++ FPS+QALGGH+ASH+K P
Sbjct: 165 NCLMLLSRGSDQFEATYSSTTSNNRVFECKTCNRQFPSFQALGGHRASHKK-------PR 323
Query: 142 AAAVNDNASVSTSTGNGGKMHECSICHKSFPTGQALGGHKRCHYEGGKSSNSTNSNVHAN 201
N + + T K HECSIC F GQALGGH R H + N N+H N
Sbjct: 324 LMGENIDGQL-LHTPPKPKTHECSICGLEFAIGQALGGHMRRHRAANMNG---NKNMH-N 488
Query: 202 TSSAVTTTSDGGAASA 217
+++ ++ +S GG S+
Sbjct: 489 SNNTMSCSSGGGGDSS 536
>TC88075 homologue to GP|2346978|dbj|BAA21923.1 ZPT2-14 {Petunia x hybrida},
partial (38%)
Length = 674
Score = 73.9 bits (180), Expect = 6e-14
Identities = 51/149 (34%), Positives = 73/149 (48%), Gaps = 2/149 (1%)
Frame = +3
Query: 57 LALCLIMLAQSGNNNNKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKLTHKCSVCDKA 116
L+ LI + + N + + D T + S Q+++ P++ +C C++
Sbjct: 9 LSHTLIPMMKRQRENEEKESIDLATTLMLLSSRITQQNKT----YSPVEF--ECKTCNRK 170
Query: 117 FPSYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNGGKMHECSICHKSFPTGQA 176
F S+QALGGH+ASH+K + A N N KMH+CSIC + F GQA
Sbjct: 171 FSSFQALGGHRASHKKLKLLDSEEAHKVNIHN--------NKPKMHQCSICGQEFKLGQA 326
Query: 177 LGGHKRCH--YEGGKSSNSTNSNVHANTS 203
LGGH R H G SS+S N V A +S
Sbjct: 327 LGGHMRRHRINNEGFSSSSINYQVIAKSS 413
>TC81612 similar to GP|2346978|dbj|BAA21923.1 ZPT2-14 {Petunia x hybrida},
partial (50%)
Length = 612
Score = 73.6 bits (179), Expect = 8e-14
Identities = 40/89 (44%), Positives = 49/89 (54%)
Frame = +3
Query: 96 SPPQQQPPLKLTHKCSVCDKAFPSYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTST 155
S PQQ+ ++C C+K F S+QALGGH+ASH++ A + S S
Sbjct: 156 SCPQQKSYENGEYECKTCNKKFSSFQALGGHRASHKRMKL-----AEGEELKEQAKSLSL 320
Query: 156 GNGGKMHECSICHKSFPTGQALGGHKRCH 184
N KMHECSIC F GQALGGH R H
Sbjct: 321 WNKPKMHECSICGMGFSLGQALGGHMRKH 407
Score = 34.3 bits (77), Expect = 0.054
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 108 HKCSVCDKAFPSYQALGGHKASHRKSSSE 136
H+CS+C F QALGGH HR +E
Sbjct: 339 HECSICGMGFSLGQALGGHMRKHRAVINE 425
>TC93387 similar to GP|1786136|dbj|BAA19111.1 PEThy;ZPT2-6 {Petunia x
hybrida}, partial (17%)
Length = 650
Score = 63.5 bits (153), Expect = 8e-11
Identities = 34/86 (39%), Positives = 48/86 (55%)
Frame = +1
Query: 47 DNPTTTEEEYLALCLIMLAQSGNNNNKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKL 106
D EEE LA CLI+LAQ GN+ D N R + S ++ + L +
Sbjct: 301 DEDEDDEEEDLAKCLILLAQGGNHREDGGVVDENK---RVKGSHGNKKIGETSTKLGLYI 471
Query: 107 THKCSVCDKAFPSYQALGGHKASHRK 132
++C C++ FPS+QALGGH+ASH+K
Sbjct: 472 -YECKTCNRTFPSFQALGGHRASHKK 546
Score = 39.3 bits (90), Expect = 0.002
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +1
Query: 153 TSTGNGGKMHECSICHKSFPTGQALGGHKRCH 184
TST G ++EC C+++FP+ QALGGH+ H
Sbjct: 445 TSTKLGLYIYECKTCNRTFPSFQALGGHRASH 540
>AL371585 similar to PIR|S69193|S691 probable finger protein Pszf1 - garden
pea, partial (19%)
Length = 497
Score = 50.8 bits (120), Expect = 6e-07
Identities = 27/75 (36%), Positives = 35/75 (46%)
Frame = +1
Query: 156 GNGGKMHECSICHKSFPTGQALGGHKRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGGAA 215
GN K+HECSIC F +GQALGGH R H + ++A +
Sbjct: 52 GNKAKIHECSICGSEFTSGQALGGHMRRH--------------RVSVANAAAVAAPDERV 189
Query: 216 SAHSLRGFDLNLPAP 230
++ DLNLPAP
Sbjct: 190 RPRNILQLDLNLPAP 234
Score = 37.4 bits (85), Expect = 0.006
Identities = 17/35 (48%), Positives = 20/35 (56%)
Frame = +1
Query: 108 HKCSVCDKAFPSYQALGGHKASHRKSSSENQTPAA 142
H+CS+C F S QALGGH HR S + AA
Sbjct: 70 HECSICGSEFTSGQALGGHMRRHRVSVANAAAVAA 174
>TC82775 similar to PIR|T52382|T52382 zinc finger protein ZPT4-4 C2H2-type
[imported] - garden petunia, partial (17%)
Length = 1152
Score = 50.1 bits (118), Expect = 1e-06
Identities = 34/116 (29%), Positives = 45/116 (38%), Gaps = 30/116 (25%)
Frame = +3
Query: 108 HKCSVCDKAFPSYQALGGHKASHRKSSS-------ENQTPAAAAVNDNASVSTSTGNGGK 160
H C C K+FP ++LGGH SH + S E Q + ND+ +T
Sbjct: 150 HACKFCSKSFPCGRSLGGHMRSHINNLSAEKAEHKEKQLIFSTKKNDSIGSEAATNGSYG 329
Query: 161 MHE-----------------------CSICHKSFPTGQALGGHKRCHYEGGKSSNS 193
+ E C C K F + QAL GH +CH E + SNS
Sbjct: 330 LRENPKKTWRKRIADSSEDSYVYDKFCKECGKCFHSWQALFGHMKCHSEKERVSNS 497
>TC80421 similar to PIR|D96707|D96707 probable zinc finger protein T22E19.1
[imported] - Arabidopsis thaliana, partial (37%)
Length = 1217
Score = 42.7 bits (99), Expect = 2e-04
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 8/124 (6%)
Frame = +2
Query: 69 NNNNKNNNTDNNTNTLR-----AESSSNSQSQSPPQQQPPLKLTHKCSVCDKAFPSYQAL 123
+NN K T +N T + N S PP +QPPL+
Sbjct: 26 HNNTKRMGT*SNLTTCLKLFGFSVQEENEDSSPPPPRQPPLE------------------ 151
Query: 124 GGHKASHRKSSSENQTPAAAAVN---DNASVSTSTGNGGKMHECSICHKSFPTGQALGGH 180
+ N +P+ + + D + S + +G + +EC C + F QALGGH
Sbjct: 152 ---------DGTGNTSPSGSTESVSGDGGASSINPTSGDRKYECQYCCREFANSQALGGH 304
Query: 181 KRCH 184
+ H
Sbjct: 305 QNAH 316
>BI308410 similar to PIR|S55882|S558 CCHH finger protein 2 - Arabidopsis
thaliana, partial (46%)
Length = 492
Score = 42.7 bits (99), Expect = 2e-04
Identities = 39/159 (24%), Positives = 64/159 (39%), Gaps = 3/159 (1%)
Frame = +3
Query: 71 NNKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKLTHKCSVCDKAFPSYQALGGHKASH 130
NN+N + N L SSS+S S S Q+ C+ C + F S QALGGH+ +H
Sbjct: 9 NNENIHHLNLDLVLEPSSSSSSSSSSMEQR------IFSCNYCQRKFYSSQALGGHQNAH 170
Query: 131 ---RKSSSENQTPAAAAVNDNASVSTSTGNGGKMHECSICHKSFPTGQALGGHKRCHYEG 187
R + +++ ++A + A + N F T LG H H +
Sbjct: 171 KLERTLAKKSREMSSAMQSSYAELPEHPSN-------------FSTNYHLGSHGNAHLDN 311
Query: 188 GKSSNSTNSNVHANTSSAVTTTSDGGAASAHSLRGFDLN 226
+ + + +GGA+ + RG++ N
Sbjct: 312 NYRQGHVMRHGGRKDQFSYGNSKEGGASWS---RGYNSN 419
>TC88476 homologue to GP|21592423|gb|AAM64374.1 zinc finger protein 5 ZFP5
{Arabidopsis thaliana}, partial (21%)
Length = 945
Score = 39.3 bits (90), Expect = 0.002
Identities = 23/85 (27%), Positives = 41/85 (48%)
Frame = +2
Query: 48 NPTTTEEEYLALCLIMLAQSGNNNNKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKLT 107
NPT E +A +N+ + + N++N++ + Q ++ + Q K
Sbjct: 104 NPTKNNNEGVA----------KESNEGDESVNSSNSISSGGDKIVQEKNSSKDQDERKF- 250
Query: 108 HKCSVCDKAFPSYQALGGHKASHRK 132
+C C K F + QALGGH+ +H+K
Sbjct: 251 -ECQYCFKEFANSQALGGHQNAHKK 322
Score = 37.4 bits (85), Expect = 0.006
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Frame = +2
Query: 112 VCDKAFPSYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNGG------------ 159
+CD + L G + + K+++E + +++ + S S +GG
Sbjct: 53 MCDISVEKRLRLFGFELNPTKNNNEGVAKESNEGDESVNSSNSISSGGDKIVQEKNSSKD 232
Query: 160 ---KMHECSICHKSFPTGQALGGHKRCH 184
+ EC C K F QALGGH+ H
Sbjct: 233 QDERKFECQYCFKEFANSQALGGHQNAH 316
>AW686309 homologue to PIR|S55886|S558 CCHH finger protein 6 - Arabidopsis
thaliana, partial (25%)
Length = 669
Score = 39.3 bits (90), Expect = 0.002
Identities = 18/44 (40%), Positives = 26/44 (58%), Gaps = 2/44 (4%)
Frame = +2
Query: 143 AAVNDNASVSTSTG--NGGKMHECSICHKSFPTGQALGGHKRCH 184
A +N + + S S+ NG K++EC C + F QALGGH+ H
Sbjct: 164 ACLNQSPTQSESSEPLNGRKLYECQYCCREFANSQALGGHQNAH 295
Score = 37.4 bits (85), Expect = 0.006
Identities = 20/63 (31%), Positives = 35/63 (54%), Gaps = 7/63 (11%)
Frame = +2
Query: 77 TDNNTNTLRA-----ESSSNSQSQSPPQQQPPL--KLTHKCSVCDKAFPSYQALGGHKAS 129
T +TNTL+ + + +QS + + PL + ++C C + F + QALGGH+ +
Sbjct: 113 TPTSTNTLKLFGINIQEACLNQSPTQSESSEPLNGRKLYECQYCCREFANSQALGGHQNA 292
Query: 130 HRK 132
H+K
Sbjct: 293 HKK 301
>TC82737 homologue to PIR|B96686|B96686 probable C2H2-type zinc finger
protein F15E12.19 [imported] - Arabidopsis thaliana,
partial (18%)
Length = 1006
Score = 37.4 bits (85), Expect = 0.006
Identities = 17/57 (29%), Positives = 30/57 (51%)
Frame = +2
Query: 76 NTDNNTNTLRAESSSNSQSQSPPQQQPPLKLTHKCSVCDKAFPSYQALGGHKASHRK 132
N +NN +R + + S S + ++ C+ C + F S QALGGH+ +H++
Sbjct: 317 NFNNNDLVVRDSTGISFSSTSESSNELTIQRVFSCNYCRRKFYSSQALGGHQNAHKR 487
Score = 30.8 bits (68), Expect = 0.60
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 160 KMHECSICHKSFPTGQALGGHKRCH 184
++ C+ C + F + QALGGH+ H
Sbjct: 407 RVFSCNYCRRKFYSSQALGGHQNAH 481
>BI310179 similar to PIR|T52381|T523 zinc finger protein Zat1 C2H2-type
[imported] - Arabidopsis thaliana, partial (16%)
Length = 704
Score = 36.2 bits (82), Expect = 0.014
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 162 HECSICHKSFPTGQALGGHKRCH 184
H+C C +SF G+ALGGH R H
Sbjct: 77 HKCKFCMRSFSNGRALGGHMRSH 145
Score = 33.5 bits (75), Expect = 0.092
Identities = 15/36 (41%), Positives = 22/36 (60%), Gaps = 3/36 (8%)
Frame = +2
Query: 108 HKCSVCDKAFPSYQALGGHKASHRKS---SSENQTP 140
HKC C ++F + +ALGGH SH + +E+ TP
Sbjct: 77 HKCKFCMRSFSNGRALGGHMRSHMMNLPKQTESPTP 184
>BE941923 weakly similar to GP|2346978|dbj| ZPT2-14 {Petunia x hybrida},
partial (19%)
Length = 126
Score = 36.2 bits (82), Expect = 0.014
Identities = 19/35 (54%), Positives = 19/35 (54%)
Frame = +2
Query: 150 SVSTSTGNGGKMHECSICHKSFPTGQALGGHKRCH 184
S S S N KMHECSIC GQAL GH H
Sbjct: 5 SKSVSLWNKPKMHECSICGVGCYLGQALRGHMTKH 109
>BG449113 similar to PIR|S55881|S558 CCHH finger protein 1 - Arabidopsis
thaliana, partial (15%)
Length = 632
Score = 35.8 bits (81), Expect = 0.019
Identities = 19/58 (32%), Positives = 30/58 (50%)
Frame = +1
Query: 78 DNNTNTLRAESSSNSQSQSPPQQQPPLKLTHKCSVCDKAFPSYQALGGHKASHRKSSS 135
DN++ T + S+S S P+ C+ C + F S QALGGH+ +H++ S
Sbjct: 160 DNSSKTSSENFTCGSESTSEPR-------FFTCNYCKRKFFSSQALGGHQNAHKRERS 312
Score = 32.0 bits (71), Expect = 0.27
Identities = 18/65 (27%), Positives = 29/65 (43%)
Frame = +1
Query: 146 NDNASVSTSTGNGGKMHECSICHKSFPTGQALGGHKRCHYEGGKSSNSTNSNVHANTSSA 205
++N + + + + + C+ C + F + QALGGH+ H K S SA
Sbjct: 181 SENFTCGSESTSEPRFFTCNYCKRKFFSSQALGGHQNAH----KRERSIAKRGRRTMFSA 348
Query: 206 VTTTS 210
TTS
Sbjct: 349 TGTTS 363
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.307 0.123 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,203,223
Number of Sequences: 36976
Number of extensions: 143611
Number of successful extensions: 1875
Number of sequences better than 10.0: 145
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of query: 278
length of database: 9,014,727
effective HSP length: 95
effective length of query: 183
effective length of database: 5,502,007
effective search space: 1006867281
effective search space used: 1006867281
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0218.28